BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0008.p
         (135 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KED1.1 B3KED1_9BACI XkdN-like protein                               226   5e-58
Q184A5.1 Q184A5_CLOD6 Phage protein                                   119   7e-26
A3DIB0.1 A3DIB0_CLOTH Putative uncharacterized protein                111   2e-23
A3QSA7.1 A3QSA7_9CAUD Putative uncharacterized protein                110   3e-23
C4C3W6.1 C4C3W6_9FUSO Phage XkdN-like protein                         110   5e-23

>B3KED1.1 B3KED1_9BACI XkdN-like protein
          Length = 140

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 121/135 (89%)

Query: 1   MFFAQNVACDTTEEFVVSQRFKDKEGQPVAWKLRSMTEDENQECRKAATRKVKGKSGVYT 60
           MFFA   + + TEEFVVS RFK+ EG PV WKLRS+TE+ENQECRKAATRKVKGK+GV+T
Sbjct: 6   MFFAGQSSAEITEEFVVSVRFKNAEGSPVPWKLRSITEEENQECRKAATRKVKGKNGVFT 65

Query: 61  SEIDPNDYMAKLMTSSVVHPDLKNAELQRSYNVLGAEALLRKMLLPGEFAALGERVQALN 120
            EIDPNDYMAKLM SSV++PDLKN+ELQ+SY VLGAE+LLRKMLLPGEFAALGERVQALN
Sbjct: 66  PEIDPNDYMAKLMVSSVIYPDLKNSELQKSYGVLGAESLLRKMLLPGEFAALGERVQALN 125

Query: 121 GFATDMNELVEEVKN 135
           GF  DMN+LV++VKN
Sbjct: 126 GFDRDMNDLVDDVKN 140


>Q184A5.1 Q184A5_CLOD6 Phage protein
          Length = 146

 Score =  119 bits (299), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 88/140 (62%), Gaps = 6/140 (4%)

Query: 2   FFAQNVACDTTEEFVVSQRFKDKEGQPVAWKLRSMTEDENQECRKAATRKVK-----GK- 55
           F +QN       ++V S RF DKEG+PV W+L+ ++ +E++  R+  T++VK     GK 
Sbjct: 7   FLSQNAIKVDNVKYVASNRFLDKEGKPVEWELKVLSSEEDEALRRKCTKRVKVIGNNGKH 66

Query: 56  SGVYTSEIDPNDYMAKLMTSSVVHPDLKNAELQRSYNVLGAEALLRKMLLPGEFAALGER 115
           +G YTSEID N Y+A+L  +S V PDLK+AELQ SY V+G   LL+ ML  GE+     +
Sbjct: 67  TGQYTSEIDYNSYVAELCVASTVFPDLKDAELQNSYGVMGEAQLLKTMLTAGEYVNYTVK 126

Query: 116 VQALNGFATDMNELVEEVKN 135
           V  +NGF T   + VEE KN
Sbjct: 127 VNEVNGFDTSFEDKVEEAKN 146


>A3DIB0.1 A3DIB0_CLOTH Putative uncharacterized protein
          Length = 137

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 4/120 (3%)

Query: 16  VVSQRFKDKEGQPVAWKLRSMTEDENQECRKAATRKVKGKSGVYTSEIDPNDYMAKLMTS 75
           +VS RFKDK+G  V +++R +T++EN+   K  T++ K     +    D  +Y+++L  S
Sbjct: 21  IVSNRFKDKDGNLVPFEIRPITQEENKMLIKKYTKRDKKGQEYF----DRAEYISELTAS 76

Query: 76  SVVHPDLKNAELQRSYNVLGAEALLRKMLLPGEFAALGERVQALNGFATDMNELVEEVKN 135
           +VV PDL NAELQ++Y VLGA ALL+KML  GE+A L + VQ L+G  TD+NE +EEVKN
Sbjct: 77  AVVFPDLTNAELQKAYGVLGASALLQKMLYVGEYAELAQAVQELSGLDTDINEDIEEVKN 136


>A3QSA7.1 A3QSA7_9CAUD Putative uncharacterized protein
          Length = 146

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 84/140 (60%), Gaps = 6/140 (4%)

Query: 2   FFAQNVACDTTEEFVVSQRFKDKEGQPVAWKLRSMTEDENQECRKAATRKV-----KGK- 55
           F +QN       ++V S+RF  ++G+ + W+L+++  D +++ RK +T +V     KGK 
Sbjct: 7   FLSQNAIKVENRKYVASERFIGEDGKAIEWELKAIDSDRDRQLRKDSTIRVPVLNKKGKA 66

Query: 56  SGVYTSEIDPNDYMAKLMTSSVVHPDLKNAELQRSYNVLGAEALLRKMLLPGEFAALGER 115
           +G YTSE D N Y  KL   +VV PDL +AELQ SY V+GAE LL  ML PGE+  L   
Sbjct: 67  TGQYTSETDFNTYTLKLCVETVVFPDLHDAELQNSYGVMGAEELLTTMLTPGEYTDLSSE 126

Query: 116 VQALNGFATDMNELVEEVKN 135
           V  +NGF     + VEE KN
Sbjct: 127 VGEVNGFDRTFEDKVEEAKN 146


>C4C3W6.1 C4C3W6_9FUSO Phage XkdN-like protein
          Length = 139

 Score =  110 bits (274), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 82/134 (61%)

Query: 2   FFAQNVACDTTEEFVVSQRFKDKEGQPVAWKLRSMTEDENQECRKAATRKVKGKSGVYTS 61
           F  QNV     E+ + ++R   + G+P  W ++++T   +   RK  T+ V    GVY  
Sbjct: 6   FLKQNVRKPEEEKVIATKRVLKENGEPEEWIIKAITNTTDDRLRKNNTKTVNRGKGVYVP 65

Query: 62  EIDPNDYMAKLMTSSVVHPDLKNAELQRSYNVLGAEALLRKMLLPGEFAALGERVQALNG 121
           E+D   Y+  L+ +SVV+PDL+N E Q S+NV+GA  LL  +LLPGE+ AL E+VQ +NG
Sbjct: 66  ELDTTAYLKDLVVNSVVYPDLENKEAQDSWNVMGAGQLLDCLLLPGEYNALVEKVQKING 125

Query: 122 FATDMNELVEEVKN 135
           +   + +LV+E KN
Sbjct: 126 WDISLPDLVDEAKN 139


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 719,307,319
Number of extensions: 24724834
Number of successful extensions: 50307
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 50268
Number of HSP's successfully gapped: 42
Length of query: 135
Length of database: 3,060,696,203
Length adjustment: 99
Effective length of query: 36
Effective length of database: 2,128,015,718
Effective search space: 76608565848
Effective search space used: 76608565848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)