BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0007.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KED2.1 B3KED2_9BACI Phage protein 202 8e-51 C1FRZ8.1 C1FRZ8_CLOBJ Core tail protein 198 1e-49 C3KWN5.1 C3KWN5_CLOB6 Core tail protein 196 5e-49 A5I2K4.1 A5I2K4_CLOBH Putative phage protein 196 5e-49 B1Q875.1 B1Q875_CLOBO Core tail protein 192 6e-48 >B3KED2.1 B3KED2_9BACI Phage protein Length = 152 Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 103/152 (67%), Positives = 128/152 (84%) Query: 1 MAFLKASDTLSGQEGRAYAVIGTQTEEMFYVKTLEATVEKTKAEVKTLGRRGVQHKATGW 60 MAFL+ASDT+SGQEG+A+ IG + EEMFY+KTLEATVEK KAE+KT+G+R VQHKA GW Sbjct: 1 MAFLRASDTISGQEGKAFVKIGDRMEEMFYIKTLEATVEKEKAELKTMGQRAVQHKAIGW 60 Query: 61 SGSGTMTIFYMTSRFRQMMLDYMHTGVDQYFDIEVTNDDPSSSVGAQRIILKGVNLDSVI 120 GSGTMTI+Y+T+ FR++M++Y+ TG D YF IEV N+DP SS G Q +IL+GVNLDSVI Sbjct: 61 KGSGTMTIYYVTTLFRELMMEYIQTGKDAYFMIEVRNEDPGSSTGRQTVILEGVNLDSVI 120 Query: 121 MASLDTESDALEEEVSFTFEDVQIAQAFGSPA 152 MASLDTE++ALEEEV+FTFE+V+I F A Sbjct: 121 MASLDTEAEALEEEVAFTFENVRIETPFNPLA 152 >C1FRZ8.1 C1FRZ8_CLOBJ Core tail protein Length = 154 Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 90/153 (58%), Positives = 113/153 (73%) Query: 1 MAFLKASDTLSGQEGRAYAVIGTQTEEMFYVKTLEATVEKTKAEVKTLGRRGVQHKATGW 60 M FLKA DT+SGQE R + I + EE+FY K LE+ VEK K EV+TL +RG QHKA GW Sbjct: 1 MGFLKAGDTISGQEARGFITIDGRNEELFYAKKLESKVEKKKTEVRTLSKRGEQHKAAGW 60 Query: 61 SGSGTMTIFYMTSRFRQMMLDYMHTGVDQYFDIEVTNDDPSSSVGAQRIILKGVNLDSVI 120 SGSGT+T++Y+TS FR++M+ YM TGVD YFDI VTN+DP+SS+G Q +LK NLD V Sbjct: 61 SGSGTLTVYYVTSLFRELMIKYMKTGVDTYFDITVTNEDPTSSIGKQTTVLKDCNLDEVS 120 Query: 121 MASLDTESDALEEEVSFTFEDVQIAQAFGSPAL 153 MA D ES+ LEE++ FTF+DV + FG P L Sbjct: 121 MAMFDVESEVLEEDMGFTFDDVDLLNKFGKPVL 153 >C3KWN5.1 C3KWN5_CLOB6 Core tail protein Length = 154 Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 89/153 (58%), Positives = 113/153 (73%) Query: 1 MAFLKASDTLSGQEGRAYAVIGTQTEEMFYVKTLEATVEKTKAEVKTLGRRGVQHKATGW 60 M FLKA DT+SGQE R + I + EE+FY K LE+ VEK K EV+TL +RG QHKA GW Sbjct: 1 MGFLKAGDTISGQEARGFITIDGRNEELFYAKKLESKVEKKKTEVRTLSKRGEQHKAAGW 60 Query: 61 SGSGTMTIFYMTSRFRQMMLDYMHTGVDQYFDIEVTNDDPSSSVGAQRIILKGVNLDSVI 120 SGSGT+T++Y+TS FR++M+ Y+ TGVD YFDI VTN+DP+SS+G Q +LK NLD V Sbjct: 61 SGSGTLTVYYVTSLFRELMIKYIKTGVDTYFDITVTNEDPTSSIGKQTTVLKDCNLDEVS 120 Query: 121 MASLDTESDALEEEVSFTFEDVQIAQAFGSPAL 153 MA D ES+ LEE++ FTF+DV + FG P L Sbjct: 121 MAMFDVESEVLEEDMGFTFDDVDLLDKFGKPVL 153 >A5I2K4.1 A5I2K4_CLOBH Putative phage protein Length = 154 Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 89/153 (58%), Positives = 113/153 (73%) Query: 1 MAFLKASDTLSGQEGRAYAVIGTQTEEMFYVKTLEATVEKTKAEVKTLGRRGVQHKATGW 60 M FLKA DT+SGQE R + I + EE+FY K LE+ VEK K EV+TL +RG QHKA GW Sbjct: 1 MGFLKAGDTISGQEARGFITIDGRNEELFYAKKLESKVEKKKTEVRTLSKRGEQHKAAGW 60 Query: 61 SGSGTMTIFYMTSRFRQMMLDYMHTGVDQYFDIEVTNDDPSSSVGAQRIILKGVNLDSVI 120 SGSGT+T++Y+TS FR++M+ Y+ TGVD YFDI VTN+DP+SS+G Q +LK NLD V Sbjct: 61 SGSGTLTVYYVTSLFRELMIKYIKTGVDTYFDITVTNEDPTSSIGKQTTVLKDCNLDEVS 120 Query: 121 MASLDTESDALEEEVSFTFEDVQIAQAFGSPAL 153 MA D ES+ LEE++ FTF+DV + FG P L Sbjct: 121 MAMFDVESEVLEEDMGFTFDDVDLLDKFGKPVL 153 >B1Q875.1 B1Q875_CLOBO Core tail protein Length = 154 Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 88/153 (57%), Positives = 110/153 (71%) Query: 1 MAFLKASDTLSGQEGRAYAVIGTQTEEMFYVKTLEATVEKTKAEVKTLGRRGVQHKATGW 60 M F KA DT+SGQE RAY I + EE+FY K +E+ VEK K EVKTLG RG Q+KA GW Sbjct: 1 MGFFKAEDTISGQEARAYITIEGRNEELFYAKKVESEVEKLKTEVKTLGHRGTQNKAAGW 60 Query: 61 SGSGTMTIFYMTSRFRQMMLDYMHTGVDQYFDIEVTNDDPSSSVGAQRIILKGVNLDSVI 120 G+GT+T++Y TS FR +ML YM G+D YFD+ VTN+DP+S++G Q ++LK NLD V Sbjct: 61 KGTGTLTVYYATSLFRDLMLKYMKDGIDVYFDMTVTNEDPTSALGKQTVVLKQCNLDKVN 120 Query: 121 MASLDTESDALEEEVSFTFEDVQIAQAFGSPAL 153 MA D ES+ LEEE+SFTFEDV + F P L Sbjct: 121 MAMFDVESEVLEEEMSFTFEDVDLLDKFNKPVL 153 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.129 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 790,489,164 Number of extensions: 28005622 Number of successful extensions: 76056 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 76049 Number of HSP's successfully gapped: 46 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)