BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0006.p (425 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KED3.1 B3KED3_9BACI Putative uncharacterized protein 440 e-121 Q24QE6.1 Q24QE6_DESHY Putative uncharacterized protein 390 e-106 B8FNU4.1 B8FNU4_DESHD Phage protein 390 e-106 B1D690.1 B1D690_9BACL Putative uncharacterized protein 380 e-103 B1Q874.1 B1Q874_CLOBO Putative uncharacterized protein 291 7e-77 >B3KED3.1 B3KED3_9BACI Putative uncharacterized protein Length = 439 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 232/425 (54%), Positives = 277/425 (65%), Gaps = 1/425 (0%) Query: 1 VYVNVASNQSAIGKMGTRGITALALSLSWGAPGVITKITAQEDFEKLLGYDLGHPTLLPV 60 VY ++S + IG++G RGI AL LSL WG P I I + +LGYD+ P LL V Sbjct: 16 VYTQISSQEQPIGRVGERGIAALGLSLPWGEPQKILTIKPGTNLVDVLGYDITAPQLLSV 75 Query: 61 REALKRASTVLLYRLNEGVKATVTNNGLQVTAKYGGERGNDISVIIEKNIENNVLFDVKT 120 +E LKRA T+LLYRLN GV+A + GL+ TA YGGERGNDI +++E +++ F V T Sbjct: 76 KENLKRAGTLLLYRLNSGVQAAGSVAGLKATALYGGERGNDIQIVVEHAVDDPRKFVVST 135 Query: 121 LLAGTELDKQTVGDADELAANDYVTFQKNGTEGLTLTAGIRLXXXXXXXXXXXXHSDFLG 180 LL+G +DKQ V A EL N YVTF + T L TAG L H DFL Sbjct: 136 LLSGKAVDKQLVASAAELQPNLYVTFTPD-TGDLAATAGFALTGGANGTVTNQEHVDFLA 194 Query: 181 ALEVQEFQTVGLLSKDNSLKALYSAFVKRLRDMEGKKVQAVVSDYAAAGHEGIISVKNGV 240 ALEVQ+FQTVGLLS D +LK+LY+AFVKRLR+ +GKKVQAV+ DY A +EGIISVKNGV Sbjct: 195 ALEVQDFQTVGLLSADPTLKSLYTAFVKRLREQDGKKVQAVLPDYPTADYEGIISVKNGV 254 Query: 241 VLSDGTTIDGEHXXXXXXXXXXXXXXNESLTYQAYXXXXXXXXRLSHSETTDALLNGEFL 300 VL+DGT +D NESLTY AY RLSH+E AL GEFL Sbjct: 255 VLTDGTILDKVKAVAWVTGATAAAAVNESLTYAAYDEAVDTDVRLSHTEIEAALTKGEFL 314 Query: 301 FTYSGGRAVVEQDINTFTAYAPDKGRAFSKNRVLRVLDGIANDLKSIFEKYYIGKVANNE 360 F+YSGG+AVVEQDIN+FT+ P K R FSKNRV+RVLDGIANDLK IFEK YIGKV NN Sbjct: 315 FSYSGGKAVVEQDINSFTSIEPAKARHFSKNRVVRVLDGIANDLKLIFEKSYIGKVDNNV 374 Query: 361 DGRTMFWSQCATYMNDLQNIGAIEDFKAQTDVVVAAGTDSXXXXXXXXXXXXXXXEKVYM 420 DGRT+FW++CA Y L NIGAI++F A D+VV GT+ EKVYM Sbjct: 375 DGRTLFWAECAAYFASLHNIGAIQNFDANEDIVVTPGTEGDVLFVDIKVQPVDAIEKVYM 434 Query: 421 KVKVV 425 KVKVV Sbjct: 435 KVKVV 439 >Q24QE6.1 Q24QE6_DESHY Putative uncharacterized protein Length = 438 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/424 (48%), Positives = 267/424 (62%), Gaps = 2/424 (0%) Query: 1 VYVNVASNQSAIGKMGTRGITALALSLSWGAPGVITKITAQEDFEKLLGYDLGHPTLLPV 60 VY+N S A G +G RGI ++ L LSWG PG + I A +D LGY + L + Sbjct: 16 VYINFKSEPQAAGTLGERGIVSMPLILSWGEPGKMITIEAGDDVFPKLGYSIMDAQLRLI 75 Query: 61 REALKRASTVLLYRLNEGVKATVTNNGLQVTAKYGGERGNDISVIIEKNIENNVLFDVKT 120 EALKRA T+LLYRLN G KA VT L VTAK+GG RGNDI+++I++NI++ FDV T Sbjct: 76 NEALKRAKTLLLYRLNAGTKAAVTVGNLTVTAKWGGARGNDITLVIQENIDDETKFDVST 135 Query: 121 LLAGTELDKQTVGDADELAANDYVTFQKNGTEGLTLTAGIRLXXXXXXXXXXXXHSDFLG 180 L+ G ELDKQTV D LAAND+V F +GT LT TAG L + D+L Sbjct: 136 LVDGAELDKQTVSDIAGLAANDWVIF--SGTGALTETAGAPLINGSDGAVTNQAYIDYLA 193 Query: 181 ALEVQEFQTVGLLSKDNSLKALYSAFVKRLRDMEGKKVQAVVSDYAAAGHEGIISVKNGV 240 A+E+ +F T+ L S D++LKA ++AF KRLRD EGKK+Q V+ +Y AA +EG+ISVKNGV Sbjct: 194 AVEIFDFNTIALPSTDDALKATFTAFAKRLRDDEGKKIQVVLENYPAADYEGVISVKNGV 253 Query: 241 VLSDGTTIDGEHXXXXXXXXXXXXXXNESLTYQAYXXXXXXXXRLSHSETTDALLNGEFL 300 VL+DGT + NESLTYQ Y R ++++ AL GEFL Sbjct: 254 VLADGTILTAAQATAWVAGATAGARVNESLTYQGYDEAVDVAPRYTNAQIIAALQAGEFL 313 Query: 301 FTYSGGRAVVEQDINTFTAYAPDKGRAFSKNRVLRVLDGIANDLKSIFEKYYIGKVANNE 360 FT S +A+VEQDINT T++ DKG+ F+KNRV+RVLDGI ND IF K+YIGKV+NN Sbjct: 314 FTASDNQALVEQDINTLTSFTADKGKQFAKNRVIRVLDGINNDFVRIFSKFYIGKVSNNA 373 Query: 361 DGRTMFWSQCATYMNDLQNIGAIEDFKAQTDVVVAAGTDSXXXXXXXXXXXXXXXEKVYM 420 DGR + S+C YMN LQ+I AI++F QTD+ V +G D EK+Y+ Sbjct: 374 DGRNLLKSECINYMNTLQDIDAIKNFDGQTDLTVQSGNDVDAVYIEAYAWPVDSIEKIYV 433 Query: 421 KVKV 424 +V++ Sbjct: 434 RVRI 437 >B8FNU4.1 B8FNU4_DESHD Phage protein Length = 438 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/424 (48%), Positives = 267/424 (62%), Gaps = 2/424 (0%) Query: 1 VYVNVASNQSAIGKMGTRGITALALSLSWGAPGVITKITAQEDFEKLLGYDLGHPTLLPV 60 VY+N S A G +G RGI ++ L LSWG PG + I A +D LGY + L + Sbjct: 16 VYINFKSEPQAAGTLGERGIVSMPLILSWGEPGKMITIEAGDDVFPKLGYSIMDAQLRLI 75 Query: 61 REALKRASTVLLYRLNEGVKATVTNNGLQVTAKYGGERGNDISVIIEKNIENNVLFDVKT 120 EALKRA T+LLYRLN G KA VT L VTAK+GG RGNDI+++I++NI++ FDV T Sbjct: 76 NEALKRAKTLLLYRLNAGTKAAVTVGNLTVTAKWGGARGNDITLVIQENIDDETKFDVST 135 Query: 121 LLAGTELDKQTVGDADELAANDYVTFQKNGTEGLTLTAGIRLXXXXXXXXXXXXHSDFLG 180 L+ G ELDKQTV D LAAND+V F +GT LT TAG L + D+L Sbjct: 136 LVDGAELDKQTVSDIAGLAANDWVIF--SGTGALTETAGAPLINGSDGAVTNQAYIDYLA 193 Query: 181 ALEVQEFQTVGLLSKDNSLKALYSAFVKRLRDMEGKKVQAVVSDYAAAGHEGIISVKNGV 240 A+E+ +F T+ L S D++LKA ++AF KRLRD EGKK+Q V+ +Y AA +EG+ISVKNGV Sbjct: 194 AVEIFDFNTIALPSTDDALKATFTAFAKRLRDDEGKKIQVVLENYPAADYEGVISVKNGV 253 Query: 241 VLSDGTTIDGEHXXXXXXXXXXXXXXNESLTYQAYXXXXXXXXRLSHSETTDALLNGEFL 300 VL+DGT + NESLTYQ Y R ++++ AL GEFL Sbjct: 254 VLADGTILTAAQATAWVAGATAGARVNESLTYQGYDEAVDVAPRYTNAQIIAALQAGEFL 313 Query: 301 FTYSGGRAVVEQDINTFTAYAPDKGRAFSKNRVLRVLDGIANDLKSIFEKYYIGKVANNE 360 FT S +A+VEQDINT T++ DKG+ F+KNRV+RVLDGI ND IF K+YIGKV+NN Sbjct: 314 FTASDNQALVEQDINTLTSFTADKGKQFAKNRVIRVLDGINNDFVRIFSKFYIGKVSNNA 373 Query: 361 DGRTMFWSQCATYMNDLQNIGAIEDFKAQTDVVVAAGTDSXXXXXXXXXXXXXXXEKVYM 420 DGR + S+C YMN LQ+I AI++F QTD+ V +G D EK+Y+ Sbjct: 374 DGRNLLKSECINYMNTLQDIDAIKNFDGQTDLTVQSGNDVDAVYIEAYAWPVDSIEKIYV 433 Query: 421 KVKV 424 +V++ Sbjct: 434 RVRI 437 >B1D690.1 B1D690_9BACL Putative uncharacterized protein Length = 438 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/424 (48%), Positives = 265/424 (62%), Gaps = 2/424 (0%) Query: 1 VYVNVASNQSAIGKMGTRGITALALSLSWGAPGVITKITAQEDFEKLLGYDLGHPTLLPV 60 VYVNV A+G +G RGI A+AL LSWGAP + + A +D LGYDL +LPV Sbjct: 16 VYVNVGGKGQALGTLGIRGIAAMALPLSWGAPQKMITLEAGDDSLIRLGYDLNAGFILPV 75 Query: 61 REALKRASTVLLYRLNEGVKATVTNNGLQVTAKYGGERGNDISVIIEKNIENNVLFDVKT 120 REALKRA T+L+YRLN G KAT+T L TAKYGG RGND++V+I+ NI+++ +DVKT Sbjct: 76 REALKRAKTLLIYRLNTGEKATITIGQLTATAKYGGIRGNDLTVVIQNNIDDSAKYDVKT 135 Query: 121 LLAGTELDKQTVGDADELAANDYVTFQKNGTEGLTLTAGIRLXXXXXXXXXXXXHSDFLG 180 + + D+QTV EL AND++ + GT GLT +AG L HS FL Sbjct: 136 FVDQVQADQQTVTTISELKANDWIDW--TGTGGLTSSAGAPLAGGTDAATTNADHSGFLA 193 Query: 181 ALEVQEFQTVGLLSKDNSLKALYSAFVKRLRDMEGKKVQAVVSDYAAAGHEGIISVKNGV 240 ALE+ +F TV + DN+LK +Y++FVKRLRD EGKKVQAVV + AA +EG+ISVKNGV Sbjct: 194 ALELFDFNTVAYVGTDNTLKNVYASFVKRLRDDEGKKVQAVVENDPAADYEGVISVKNGV 253 Query: 241 VLSDGTTIDGEHXXXXXXXXXXXXXXNESLTYQAYXXXXXXXXRLSHSETTDALLNGEFL 300 VL DGT + N+SLTY Y R ++S+ AL NGEF+ Sbjct: 254 VLGDGTILTAAQATAWVAGATAAADVNKSLTYSVYDDAVDVSPRYTNSQINAALRNGEFV 313 Query: 301 FTYSGGRAVVEQDINTFTAYAPDKGRAFSKNRVLRVLDGIANDLKSIFEKYYIGKVANNE 360 FT S GRAVVEQDIN+ T+Y +K +AF KNRV+RVLDGI ND IF YY+GKV+NN Sbjct: 314 FTASNGRAVVEQDINSLTSYTAEKTKAFGKNRVIRVLDGINNDFVRIFSDYYLGKVSNNA 373 Query: 361 DGRTMFWSQCATYMNDLQNIGAIEDFKAQTDVVVAAGTDSXXXXXXXXXXXXXXXEKVYM 420 GR + S+C + ++ LQ IGA++ F AQ D+ V AG ++ EK+Y+ Sbjct: 374 AGRNLLKSECISNISTLQGIGAVQSFDAQNDISVYAGQETDAVNIDLNVQPVDSVEKIYI 433 Query: 421 KVKV 424 V V Sbjct: 434 TVTV 437 >B1Q874.1 B1Q874_CLOBO Putative uncharacterized protein Length = 436 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 240/423 (56%), Gaps = 4/423 (0%) Query: 2 YVNVASNQSAIGKMGTRGITALALSLSWGAPGVITKITAQEDFEKLLGYDLGHPTLLPVR 61 Y+N S + +G RGI L L L WG I I A +D K+LG ++ + L +R Sbjct: 17 YINFKSKKQGQTPIGERGIATLPLELPWGPEKEIITIHADDDLSKVLGINIADESALLIR 76 Query: 62 EALKRASTVLLYRLNEGVKATVTNNGLQVTAKYGGERGNDISVIIEKNIENNVLFDVKTL 121 E LK+A T+LLYRLNEG+KAT T GL + AKY G +GN+I+++I+ +I+ F+V T+ Sbjct: 77 EVLKKAKTLLLYRLNEGIKATATLEGLTINAKYTGTKGNNITIVIQNSIDFTGSFEVITI 136 Query: 122 LAGTELDKQTVGDADELAANDYVTFQKNGTEGLTLTAGIRLXXXXXXXXXXXXHSDFLGA 181 G ++DKQ V ++L NDYV F+ GT L +AG+ L ++D+L Sbjct: 137 FEGNKIDKQLVRTIEDLKPNDYVDFK--GTGELKTSAGLPLKGGADGTVTNQGYTDYLSV 194 Query: 182 LEVQEFQTVGLLSKDNSLKALYSAFVKRLRDMEGKKVQAVVSDYAAAGHEGIISVKNGVV 241 +E EF +G+ +KD ++KA+ + F+KRL++ +G++VQ ++ +Y A E +I+VKNGV+ Sbjct: 195 IEPYEFHAIGIPTKDPTIKAVATTFIKRLKE-DGRQVQLILENYPEADSENVITVKNGVI 253 Query: 242 LSDGTTIDGEHXXXXXXXXXXXXXXNESLTYQAYXXXXXXXXRLSHSETTDALLNGEFLF 301 LSD T I N+S TY Y + ++ E +ALLNGE +F Sbjct: 254 LSDNTVIKSNQAVAFVTGATAGANVNQSNTYLEYPGAIDVDTKYTNREIEEALLNGEIVF 313 Query: 302 TYSGGRAVVEQDINTFTAYAPDKGRAFSKNRVLRVLDGIANDLKSIFEKYYIGKVANNED 361 T S + V+EQDINTF ++ DKG+ + KNRV+R L + N + ++E YIGK N+ED Sbjct: 314 TISNRKVVIEQDINTFKSFTEDKGKDYRKNRVVRTLFEVNNGTRLLWETSYIGKGNNSED 373 Query: 362 GRTMFWSQCATYMNDLQNIGAIEDFKAQTDVVVAAGTDSXXXXXXXXXXXXXXXEKVYMK 421 GR ++ ++ LQ IGA+E+ + DV + G D EK+YM Sbjct: 374 GRNLYKKDVIKFLEQLQGIGALENVVPE-DVEIKRGQDKDSVVARVGVQPIDAMEKLYMD 432 Query: 422 VKV 424 V+V Sbjct: 433 VEV 435 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,064,288,601 Number of extensions: 77618899 Number of successful extensions: 144367 Number of sequences better than 1.0e-05: 59 Number of HSP's gapped: 144207 Number of HSP's successfully gapped: 59 Length of query: 425 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 287 Effective length of database: 1,760,596,133 Effective search space: 505291090171 Effective search space used: 505291090171 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)