BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0002.p
         (149 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEF4.1 B3KEF4_9BACI Helix-turn-helix domain protein                 205   1e-51
A4ISA1.1 A4ISA1_GEOTN Immunity repressor protein, phage-related ...   110   3e-23
Q65EP7.1 Q65EP7_BACLD YvaO                                            106   7e-22
Q9K724.1 Q9K724_BACHD Immunity repressor protein (Phage-related ...   101   2e-20
A7Z8U9.1 A7Z8U9_BACA2 YvaN                                            100   4e-20

>B3KEF4.1 B3KEF4_9BACI Helix-turn-helix domain protein
          Length = 139

 Score =  205 bits (522), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 112/133 (84%)

Query: 5   FGNYLRQLREQKGLTINQLASLAGISGAQISRIENGRRGVPKPATLRKIAEAADVPYEEL 64
           FG+YL+++RE KG +INQLA  A ISG+QISRIENG RG+PKP TLRK+AEA +VPYEEL
Sbjct: 5   FGSYLKEMRENKGWSINQLAQAADISGSQISRIENGLRGIPKPQTLRKMAEALEVPYEEL 64

Query: 65  MEHAGYLSEDMQSGAEDKVPEWATSKDKRDFRKMLEDDGELMFDGIPLNKEDKQRIKDVL 124
           M  AGYL +D     E   P WATS+DKRDF+KMLEDDGELMFDG+PL+ EDKQRIKDVL
Sbjct: 65  MNKAGYLQQDAAKHEEIPAPAWATSRDKRDFKKMLEDDGELMFDGVPLSGEDKQRIKDVL 124

Query: 125 TGLFWDAKQMNKR 137
           TGLFW+AKQMNKR
Sbjct: 125 TGLFWEAKQMNKR 137


>A4ISA1.1 A4ISA1_GEOTN Immunity repressor protein, phage-related protein
          Length = 156

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 5/99 (5%)

Query: 2   AEEFGNYLRQLREQKGLTINQLASLAGISGAQISRIENGRRGVPKPATLRKIAEAADVPY 61
           A++FG+Y+RQLRE+KG T+NQL+  +G+S AQISRIENG RGVPKP T++K++EA    Y
Sbjct: 4   AKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHSY 63

Query: 62  EELMEHAGYLSEDMQSGAEDKVPEWATSKDKRDFRKMLE 100
           E+LM+ AGYL ++    A+ K+PE  T KD+RD +K LE
Sbjct: 64  EDLMQAAGYLDDN----AQPKLPEL-TEKDERDIQKELE 97


>Q65EP7.1 Q65EP7_BACLD YvaO
          Length = 133

 Score =  106 bits (264), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 59/68 (86%)

Query: 5  FGNYLRQLREQKGLTINQLASLAGISGAQISRIENGRRGVPKPATLRKIAEAADVPYEEL 64
          FG++LRQLRE+K LT+NQLA  +G+S A ISRIENG+RGVPKPAT+RK+A+A  VPYEEL
Sbjct: 4  FGHHLRQLRERKKLTVNQLAMYSGVSSAGISRIENGKRGVPKPATIRKLADALKVPYEEL 63

Query: 65 MEHAGYLS 72
          M  AGY+S
Sbjct: 64 MASAGYIS 71


>Q9K724.1 Q9K724_BACHD Immunity repressor protein (Phage-related protein)
          Length = 154

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 74/98 (75%), Gaps = 5/98 (5%)

Query: 3   EEFGNYLRQLREQKGLTINQLASLAGISGAQISRIENGRRGVPKPATLRKIAEAADVPYE 62
           ++FG+++R LR++KG T+NQLA  +G+S AQISRIENG RGVPKP T++K++EA   PYE
Sbjct: 4   KQFGSFIRALRKKKGFTVNQLALYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHPYE 63

Query: 63  ELMEHAGYLSEDMQSGAEDKVPEWATSKDKRDFRKMLE 100
           +LM+ AGY+ ++ ++     +P   T +D+RD +K LE
Sbjct: 64  DLMQAAGYIDDNTKT----DLPAL-TERDERDIQKELE 96


>A7Z8U9.1 A7Z8U9_BACA2 YvaN
          Length = 136

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 58/69 (84%)

Query: 3  EEFGNYLRQLREQKGLTINQLASLAGISGAQISRIENGRRGVPKPATLRKIAEAADVPYE 62
          E FG  LR LRE++ LT+NQLA+ +G+S A ISRIENG+RGVPKPAT++K+A+A  +PYE
Sbjct: 2  ESFGKQLRTLREKRHLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLADALKIPYE 61

Query: 63 ELMEHAGYL 71
          ELM+ AGY+
Sbjct: 62 ELMQTAGYI 70


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 895,484,098
Number of extensions: 35638099
Number of successful extensions: 104741
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 105607
Number of HSP's successfully gapped: 74
Length of query: 149
Length of database: 3,060,696,203
Length adjustment: 111
Effective length of query: 38
Effective length of database: 2,014,963,538
Effective search space: 76568614444
Effective search space used: 76568614444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)