BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0003.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DG68.1 B1DG68_9BACL Putative uncharacterized protein 241 4e-62 P96596.1 YDBA_BACSU Uncharacterized protein ydbA 236 1e-60 C5D306.1 C5D306_9BACI Putative uncharacterized protein 234 5e-60 A6CHI4.1 A6CHI4_9BACI YdbA 232 3e-59 C3AZ61.1 C3AZ61_BACMY Putative uncharacterized protein 231 5e-59 >B1DG68.1 B1DG68_9BACL Putative uncharacterized protein Length = 270 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/252 (45%), Positives = 164/252 (65%), Gaps = 8/252 (3%) Query: 26 KWEKEQNKLMIWDHLTRLPFKVLDKLTPKFIHEKLGKLLDELGSYIQNGGNYLVAGRKVG 85 +WEKEQ L W+ L RLPF +LD+LTPKFI EK+G +LDELGSY+Q+GG YL++ ++ Sbjct: 19 QWEKEQKDLFFWEKLGRLPFVILDRLTPKFIQEKIGVVLDELGSYVQSGGRYLISKEQMY 78 Query: 86 SLM---QXXXXXXXXXXXXPFPLAVMDKAAEQLTQSSRNXXXXXXXXXXXXXXXXXXXDI 142 + + PL MD+ AE +++SS N DI Sbjct: 79 RRLLPHEELDADTALERIAQLPLGRMDEIAEGISKSSSNTATVQGATTGIGGIFTLAIDI 138 Query: 143 PAVLGLSLKVIQEIGLCYGYNPADKAERIFTVKVMQFASSDIVGKRTILKELNLQAGGNG 202 P +LG+S+K +QEI + YGY+P++K+ERIF VK +QF+SSDIVGK+ IL++L + G Sbjct: 139 PLLLGISIKALQEIAISYGYDPSEKSERIFIVKCLQFSSSDIVGKKAILEDLAVFQKGEQ 198 Query: 203 DIAPGTNEAVSKIQGWKEVITVYRDNWGWKKMLQAIPVAGMFFGAYTNRKALEDVAEAAR 262 + + +S++QGW+EV+ YRDN+GWKK+ Q IP+AG+ FGAY NR L+DV E R Sbjct: 199 -----SKQVLSQLQGWREVMLSYRDNFGWKKLFQMIPIAGILFGAYLNRSTLQDVTETGR 253 Query: 263 MLYRKRRIIARL 274 ++YRKRRI+ +L Sbjct: 254 IMYRKRRILEKL 265 >P96596.1 YDBA_BACSU Uncharacterized protein ydbA Length = 272 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/256 (45%), Positives = 159/256 (62%), Gaps = 8/256 (3%) Query: 26 KWEKEQNKLMIWDHLTRLPFKVLDKLTPKFIHEKLGKLLDELGSYIQNGGNYLVAGRKVG 85 KWEK+Q K+ W+ L+RLPF++LDKLTP+FI +K+GKLLDE+GS++Q GG YL + +++ Sbjct: 18 KWEKDQQKVWFWEKLSRLPFQLLDKLTPEFIQKKIGKLLDEVGSFVQTGGQYLTSEKQII 77 Query: 86 SLMQXXXXXXXXXXXXPF---PLAVMDKAAEQLTQSSRNXXXXXXXXXXXXXXXXXXXDI 142 + Q PL VMD+ AE + ++ N DI Sbjct: 78 RMFQKKLPEEIFESLEDIRKAPLPVMDEIAEGMGKNRTNAATVQGATTGVGGVFTLAADI 137 Query: 143 PAVLGLSLKVIQEIGLCYGYNPADKAERIFTVKVMQFASSDIVGKRTILKELNLQAGGNG 202 PAVLGLSLK +Q+I + YGY+P +K ER+F VK +Q S+D+VGKR+IL+EL + Sbjct: 138 PAVLGLSLKTLQDIAVAYGYDPKEKKERVFIVKCLQLTSADVVGKRSILQELK-----HY 192 Query: 203 DIAPGTNEAVSKIQGWKEVITVYRDNWGWKKMLQAIPVAGMFFGAYTNRKALEDVAEAAR 262 D S+IQGW+EV+ YRD +GWKK+ Q +PVAGM FGA NR L D+ E Sbjct: 193 DQDRTYKNVASQIQGWREVVLGYRDTFGWKKLFQIVPVAGMVFGAAANRSTLNDITETGM 252 Query: 263 MLYRKRRIIARLAEME 278 MLY+KRRI+ RL E E Sbjct: 253 MLYKKRRILERLKETE 268 >C5D306.1 C5D306_9BACI Putative uncharacterized protein Length = 260 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 113/253 (44%), Positives = 155/253 (61%), Gaps = 11/253 (4%) Query: 26 KWEKEQNKLMIWDHLTRLPFKVLDKLTPKFIHEKLGKLLDELGSYIQNGGNYLVAGRKVG 85 +WE++Q L W+ L RLPFKVLD+LTP +H+KLG+LLDELGSYIQ GG YLV K+ Sbjct: 16 RWEQDQKDLWFWEKLGRLPFKVLDQLTPSIVHKKLGQLLDELGSYIQTGGQYLVNEEKIL 75 Query: 86 SLMQXXXXXXXXXXXXPFPLAVMDKAAEQLTQSSRNXXXXXXXXXXXXXXXXXXXDIPAV 145 + PLA MD+ ++L + DIPA+ Sbjct: 76 EKLHVTTVQQAAH----LPLATMDRVCDELIDARVTFAQIQGATTGVGGILTLAIDIPAL 131 Query: 146 LGLSLKVIQEIGLCYGYNPADKAERIFTVKVMQFASSDIVGKRTILKELNLQAGGNGDIA 205 LGL+LK +QEI + YGYNP +K ERIF VK +QF S+DIVGK+ IL EL + Sbjct: 132 LGLALKTLQEIAIVYGYNPKEKKERIFIVKCLQFTSADIVGKKAILDELT-------SFS 184 Query: 206 PGTNEAVSKIQGWKEVITVYRDNWGWKKMLQAIPVAGMFFGAYTNRKALEDVAEAARMLY 265 + S+IQGW+EV+ +RD +GWKK+ Q +P+ G+ FGA NR ++D+AE ++LY Sbjct: 185 NEHRQVFSQIQGWREVMMTFRDQYGWKKLFQFVPIVGIIFGAVFNRAFIKDIAETGKILY 244 Query: 266 RKRRIIARLAEME 278 RKRRI+ RL+++E Sbjct: 245 RKRRILERLSQLE 257 >A6CHI4.1 A6CHI4_9BACI YdbA Length = 269 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 162/254 (63%), Gaps = 6/254 (2%) Query: 27 WEKEQNKLMIWDHLTRLPFKVLDKLTPKFIHEKLGKLLDELGSYIQNGGNYLVAGRKVGS 86 W ++Q K W+ TRLPF++LDK+TP+F+H+K+G LLDE+GSYIQNGG YL + + + Sbjct: 17 WIEDQKKAWFWEKWTRLPFQLLDKITPEFVHKKVGALLDEMGSYIQNGGKYLTSQKLMFK 76 Query: 87 LMQXXXXX--XXXXXXXPFPLAVMDKAAEQLTQSSRNXXXXXXXXXXXXXXXXXXXDIPA 144 ++ L MD+ ++ L + R DIPA Sbjct: 77 SIEKKTGIPINNIEDISKLSLEEMDELSKHLASTRRKAAAVQGATTGIGGIFTLSIDIPA 136 Query: 145 VLGLSLKVIQEIGLCYGYNPADKAERIFTVKVMQFASSDIVGKRTILKELNLQAGGNGDI 204 +LG+SLK +QEI L +GY+P DK ERIF +K +QFASSDIVGKR IL NL++ ++ Sbjct: 137 LLGISLKTLQEIALIHGYDPNDKKERIFIIKCLQFASSDIVGKRAILD--NLESYYVTEV 194 Query: 205 APGTNEAVSKIQGWKEVITVYRDNWGWKKMLQAIPVAGMFFGAYTNRKALEDVAEAARML 264 + +NE + +IQGW+EV+ YRD +GWKK+ Q +PVAG+ FGA+TNR + D+AEA +L Sbjct: 195 S--SNEVMGQIQGWREVVYTYRDQFGWKKLFQMVPVAGILFGAFTNRAMISDIAEAGSIL 252 Query: 265 YRKRRIIARLAEME 278 YRKRRI+ RL +E Sbjct: 253 YRKRRIVDRLQAIE 266 >C3AZ61.1 C3AZ61_BACMY Putative uncharacterized protein Length = 264 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/253 (43%), Positives = 160/253 (63%), Gaps = 8/253 (3%) Query: 26 KWEKEQNKLMIWDHLTRLPFKVLDKLTPKFIHEKLGKLLDELGSYIQNGGNYLVAGRKVG 85 KWEKEQ L ++ ++PF +LDKLTPKFIH+K+ LLDEL Y+ +G YL+ + Sbjct: 16 KWEKEQEDLWFFEKWGKIPFAILDKLTPKFIHKKINILLDELIQYLNSGSKYLIHPQ--- 72 Query: 86 SLMQXXXXXXXXXXXXPFPLAVMDKAAEQLTQSSRNXXXXXXXXXXXXXXXXXXXDIPAV 145 + ++ FPL+ +D +++ ++ ++ DIPAV Sbjct: 73 TTIKKFENAASLTDVQKFPLSEIDTIVDKIIENRKSVATAQGATTGFGGIFTLAIDIPAV 132 Query: 146 LGLSLKVIQEIGLCYGYNPADKAERIFTVKVMQFASSDIVGKRTILKELNLQAGGNGDIA 205 L +SL V+QEI +CYGYNP D ER+F VK +QF+SSDIVGK+TIL EL + D Sbjct: 133 LSMSLNVLQEIAICYGYNPEDIQERLFIVKCLQFSSSDIVGKQTILHELK-----HFDAR 187 Query: 206 PGTNEAVSKIQGWKEVITVYRDNWGWKKMLQAIPVAGMFFGAYTNRKALEDVAEAARMLY 265 ++++S+I+ W+EV TVYRDN+GWKK+ Q IP+AGM FGAY NRK +E++AE +M Y Sbjct: 188 VNHDDSMSQIKSWREVFTVYRDNYGWKKLFQMIPIAGMIFGAYLNRKTIEEIAEVGKMFY 247 Query: 266 RKRRIIARLAEME 278 +KRR++ RL M+ Sbjct: 248 KKRRVLDRLEGMK 260 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,327,150,779 Number of extensions: 47795453 Number of successful extensions: 99259 Number of sequences better than 1.0e-05: 101 Number of HSP's gapped: 99234 Number of HSP's successfully gapped: 105 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)