BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0001.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8G5.1 B3K8G5_9BACI Putative uncharacterized protein 269 1e-70 Q4URL2.1 Q4URL2_XANC8 Putative uncharacterized protein 223 9e-57 B0RU06.1 B0RU06_XANCB Putative membrane protein 223 9e-57 Q9P9W0.1 Q9P9W0_XYLFA Putative uncharacterized protein 220 7e-56 Q3BWQ5.1 Q3BWQ5_XANC5 Putative membrane protein 220 8e-56 >B3K8G5.1 B3K8G5_9BACI Putative uncharacterized protein Length = 246 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 136/220 (61%), Positives = 164/220 (74%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDVSAYAIGGALAGFVLALIISFKPTAAP 60 M+I GTVNK+F+ L +L+ A +W M+FNG +V + IGGA+ GFVLALIISF P AAP Sbjct: 27 MTIGGTVNKSFMLLALLIGAAVISWVMFFNGYEVFPFMIGGAIGGFVLALIISFVPKAAP 86 Query: 61 YLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRATEKFKL 120 YL P+YA+ EG FLGA+SA YE LYYGITLQAALLT+ IF+ +LLAY+T +IRAT FK Sbjct: 87 YLAPIYAILEGFFLGALSAHYEYLYYGITLQAALLTMCIFLGMLLAYRTGLIRATPGFKK 146 Query: 121 GVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDFDFIEH 180 G+ AAT GIA+VYL S VLGLFGVTVPYLH DF+FIE Sbjct: 147 GIIAATIGIALVYLFSMVLGLFGVTVPYLHDSTPIGIGISVVIIIIAALNFVLDFNFIEE 206 Query: 181 GAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 GAQ GAPKYMEWYG+FGL+VTLVWLY+EI+RLL+KL +R+ Sbjct: 207 GAQHGAPKYMEWYGSFGLLVTLVWLYIEIIRLLAKLANRD 246 >Q4URL2.1 Q4URL2_XANC8 Putative uncharacterized protein Length = 253 Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 122/225 (54%), Positives = 146/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYF--NGQDVSA---YAIGGALAGFVLALIISFK 55 M++NGTVNKT + L + + A AWS +G + A Y I GA+ G V AL SFK Sbjct: 29 MTLNGTVNKTGLLLLMAVVTAAFAWSQSVGADGMPLPAAKLYMIAGAIGGLVFALATSFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 PT AP P+YAL EG FLG+ISA YE + GI QA LLT ALL AY++ +I+AT Sbjct: 89 PTWAPVTAPLYALVEGFFLGSISAVYEARFNGIVFQAVLLTFGTMFALLFAYRSGLIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA+VYL + VLGLFGV +P++H DF Sbjct: 149 ENFKLGVVAATGGIALVYLATIVLGLFGVRIPFIHDSGLIGIGFSLFVVVVAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 DFIE G + GAPK+MEWYGAFGLMVTLVWLY+E LRLLSKL+SRN Sbjct: 209 DFIESGVEHGAPKHMEWYGAFGLMVTLVWLYIEFLRLLSKLQSRN 253 >B0RU06.1 B0RU06_XANCB Putative membrane protein Length = 253 Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 122/225 (54%), Positives = 146/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYF--NGQDVSA---YAIGGALAGFVLALIISFK 55 M++NGTVNKT + L + + A AWS +G + A Y I GA+ G V AL SFK Sbjct: 29 MTLNGTVNKTGLLLLMAVVTAAFAWSQSVGADGMPLPAAKLYMIAGAIGGLVFALATSFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 PT AP P+YAL EG FLG+ISA YE + GI QA LLT ALL AY++ +I+AT Sbjct: 89 PTWAPVTAPLYALVEGFFLGSISAVYEARFNGIVFQAVLLTFGTMFALLFAYRSGMIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA+VYL + VLGLFGV +P++H DF Sbjct: 149 ENFKLGVVAATGGIALVYLATIVLGLFGVRIPFIHDSGLIGIGFSLFVVVVAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 DFIE G + GAPK+MEWYGAFGLMVTLVWLY+E LRLLSKL+SRN Sbjct: 209 DFIESGVEHGAPKHMEWYGAFGLMVTLVWLYIEFLRLLSKLQSRN 253 >Q9P9W0.1 Q9P9W0_XYLFA Putative uncharacterized protein Length = 253 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDV-----SAYAIGGALAGFVLALIISFK 55 M++NGTVNKT L + L + AW+ V Y IGGA+ G +LALI +FK Sbjct: 29 MTLNGTVNKTGALLLLALVTSVFAWNQSLGVDGVPLLAARGYMIGGAIGGLILALITAFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 +P P+YAL EG FLGA+SA YE + GI QA LLT +A+LLAY++ +I+AT Sbjct: 89 KEWSPITAPMYALVEGFFLGAVSAVYEAKFGGIVFQAVLLTFGTLMAMLLAYRSGLIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA++YL+SF L FG+ +P +H DF Sbjct: 149 ENFKLGVMAATGGIALLYLISFALSFFGIHIPMIHEGGTFGIVFSLFVVVIAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 D IEHG +QGAPKYMEWYGAFGLMVTLVWLY+E LRLLSK++SR+ Sbjct: 209 DLIEHGVEQGAPKYMEWYGAFGLMVTLVWLYLECLRLLSKIQSRD 253 >Q3BWQ5.1 Q3BWQ5_XANC5 Putative membrane protein Length = 253 Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 142/225 (63%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDV-----SAYAIGGALAGFVLALIISFK 55 M++NGTVNKT L + + A AWS + Y I GA+ G V AL SFK Sbjct: 29 MTLNGTVNKTGALLLMAVITAAFAWSQSIGADGMPLPVARIYMIAGAIGGLVFALATSFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 PT AP P+YAL EG FLG+ISA YE + GI QA LLT ALL AY++ +I+AT Sbjct: 89 PTWAPITAPLYALIEGFFLGSISAVYEARFNGIVFQAVLLTFGTLFALLFAYRSGMIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA+VYL + VLGLFGV +P++H DF Sbjct: 149 ENFKLGVVAATGGIALVYLATIVLGLFGVRIPFIHDSGLIGIGFSLFVVVVAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 DFIE G + GAPK+MEWYGAFGLMVTLVWLY+E LRLLSKL+SRN Sbjct: 209 DFIESGVEHGAPKHMEWYGAFGLMVTLVWLYIEFLRLLSKLQSRN 253 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,083,526,518 Number of extensions: 37816317 Number of successful extensions: 166416 Number of sequences better than 1.0e-05: 248 Number of HSP's gapped: 165991 Number of HSP's successfully gapped: 252 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)