BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0079.0002.p
         (198 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2CE09.1 Q2CE09_9RHOB Putative uncharacterized protein                 73   1e-11
B0IS44.1 B0IS44_RHILT Putative uncharacterized protein                 72   2e-11
A3K7K9.1 A3K7K9_9RHOB Putative uncharacterized protein                 69   2e-10
A4BHS1.1 A4BHS1_9GAMM Phenol hydroxylase, putative                     67   7e-10
B0IRH2.1 B0IRH2_RHILT Putative uncharacterized protein                 62   3e-08

>Q2CE09.1 Q2CE09_9RHOB Putative uncharacterized protein
          Length = 346

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 62  ECHVLIHTHVRIQGVGLEYHRDIAVFRSYIIDYTVANVHLTFGDFFQTGNHTQGCGFTAT 121
           E HV    HVR++ VGLE+HRD+AV R  ++    A+  L   D  + G+H Q  G  A 
Sbjct: 240 EAHVAGDRHVRVERVGLEHHRDVAVARGDVVHPPPADGELARTDRLEAGDHAQQGGLAAA 299

Query: 122 GWSDQYQKFLIFNIKIDIDYCCFIGTRVFFENMLXTNACHCISPSSQ 168
              DQ+ +  + ++++D+     +G  V   +   ++  H ++PS +
Sbjct: 300 RRPDQHDELPVRHLEVDV--AQHLGAAVGLRDAGKSHVRHGLTPSPR 344


>B0IS44.1 B0IS44_RHILT Putative uncharacterized protein
          Length = 378

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 48/77 (62%)

Query: 62  ECHVLIHTHVRIQGVGLEYHRDIAVFRSYIIDYTVANVHLTFGDFFQTGNHTQGCGFTAT 121
           E HV+ H H+R++ +GLE H D A+   ++ID    ++HLT GD  +TG+H Q  G    
Sbjct: 269 ESHVVEHRHMRVERIGLEDHGDAALGGRHVIDEMAIDIHLTAGDRLETGDHAQKRGLATA 328

Query: 122 GWSDQYQKFLIFNIKID 138
           G +D+  +F + +I++D
Sbjct: 329 GRTDEDDEFALLDIEVD 345


>A3K7K9.1 A3K7K9_9RHOB Putative uncharacterized protein
          Length = 369

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 62  ECHVLIHTHVRIQGVGLEYHRDIAVFRSYIIDYTVANVHLTFGDFFQTGNHTQGCGFTAT 121
           E HV+ H HVRI+ VGLE+HRD A+   +I+D+   +  +T GD FQ  +H Q  G  A 
Sbjct: 158 EGHVVAHRHVRIKRVGLEHHRDAALRGRHIVDHHSVDFKVTAGDPFQPCDHAQKGGLAAA 217

Query: 122 GWSDQYQKFLIFNIKIDI 139
             +D+  +F   ++K+DI
Sbjct: 218 RGTDKDDQFSGLDLKVDI 235


>A4BHS1.1 A4BHS1_9GAMM Phenol hydroxylase, putative
          Length = 350

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 63  CHVLIHTHVRIQGVGLEYHRDIAVFRSYIIDYTVANVHLTFGDFFQTGNHTQGCGFTATG 122
            H+ I+ HVR+QGV L++H ++A+ R   +   + +V+LT GD FQ GN  Q  G     
Sbjct: 152 SHIFIYRHVRVQGVVLKHHGNVALGRCQRVHLPITDVNLTLGDGFQPGNGAQQRGLATAR 211

Query: 123 WSDQYQKFLIFNIKID-IDYCCFIGTRVFF 151
             DQ+Q+    NIK D  D    IG R F+
Sbjct: 212 RPDQHQELTRLNIKTDAFDRVMTIGIRFFY 241


>B0IRH2.1 B0IRH2_RHILT Putative uncharacterized protein
          Length = 358

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 65  VLIHTHVRIQGVGLEYHRDIAVFRSYIIDYTVANVHLTFGDFFQTGNHTQGCGFTATGWS 124
           +L H HVRI+ V L+ H DIA  R+  +D  VA+  LT GD F+T +H Q   F+A+  +
Sbjct: 129 ILPHRHVRIERVVLKDHGDIAFARAKPVDDLVADHDLTAGDVFETRDHAQCRRFSASRRT 188

Query: 125 DQYQKFLIFNIKIDIDYCCFIGTRVFFENMLXTNACH 161
            +  +F++F++K D  +       + F++ L    CH
Sbjct: 189 HENDEFIVFDVKADAAHGLVDA--IGFDDALEFQPCH 223


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.342    0.150    0.505 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,039,355,585
Number of extensions: 37209504
Number of successful extensions: 72149
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 72150
Number of HSP's successfully gapped: 9
Length of query: 198
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 69
Effective length of database: 1,845,385,268
Effective search space: 127331583492
Effective search space used: 127331583492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 127 (53.5 bits)