BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0079.0001.p (162 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K334.1 B3K334_9BACI ABC transporter related 226 7e-58 B1DKW2.1 B1DKW2_9BACL ABC transporter related 219 8e-56 Q70HW1.1 Q70HW1_ALIAC ATP-binding MalK protein 194 2e-48 C1PS84.1 C1PS84_ALIAC Carbohydrate ABC transporter ATP-binding p... 194 2e-48 B7DP02.1 B7DP02_9BACL ABC transporter related protein 194 2e-48 >B3K334.1 B3K334_9BACI ABC transporter related Length = 376 Score = 226 bits (575), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 106/114 (92%), Positives = 113/114 (99%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MAGVRLEHI+KKY G+DKATVID+NLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG Sbjct: 3 MAGVRLEHIYKKYAGADKATVIDVNLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 62 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114 K+YIGDRVVNDVAPKDRDIAMVFQSYALYPHM+VYQNMAFGLKLRKVKK+EID+ Sbjct: 63 KLYIGDRVVNDVAPKDRDIAMVFQSYALYPHMNVYQNMAFGLKLRKVKKDEIDK 116 >B1DKW2.1 B1DKW2_9BACL ABC transporter related Length = 373 Score = 219 bits (557), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 103/114 (90%), Positives = 110/114 (96%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MAGVRLE I+KKYPGSDKA+V D+NLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG Sbjct: 1 MAGVRLEGIYKKYPGSDKASVTDVNLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114 K+YIGDRVVNDVAPKDRDIAMVFQSYALYPHM+VYQNMAFGLKLRK KK +ID+ Sbjct: 61 KLYIGDRVVNDVAPKDRDIAMVFQSYALYPHMNVYQNMAFGLKLRKFKKADIDK 114 >Q70HW1.1 Q70HW1_ALIAC ATP-binding MalK protein Length = 384 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 21/160 (13%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA V LEHI+K YPG + TV D NLDI+DKEF V VGPSGCGK+TTLRMIAGLE+I+EG Sbjct: 1 MARVLLEHIYKTYPGQTEPTVKDFNLDIQDKEFTVFVGPSGCGKTTTLRMIAGLEDITEG 60 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDRVILFFY 120 +YIGDR VNDV PKDRDIAMVFQ+YALYPHM+VYQNMAFGLKLRKV K EIDR Sbjct: 61 NLYIGDRRVNDVPPKDRDIAMVFQNYALYPHMTVYQNMAFGLKLRKVPKAEIDR------ 114 Query: 121 RNYMFIRVKFASQAALTLIVSKAHLVEKCDKIGEKSKSGG 160 RV+ A++ I+ AHL+++ K+ SGG Sbjct: 115 ------RVQEAAK-----ILDIAHLLDR----KPKALSGG 139 >C1PS84.1 C1PS84_ALIAC Carbohydrate ABC transporter ATP-binding protein, CUT1 family Length = 384 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 21/160 (13%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA V LEHI+K YPG + TV D NLDI+DKEF V VGPSGCGK+TTLRMIAGLE+I+EG Sbjct: 1 MARVLLEHIYKTYPGQTEPTVKDFNLDIQDKEFTVFVGPSGCGKTTTLRMIAGLEDITEG 60 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDRVILFFY 120 +YIGDR VNDV PKDRDIAMVFQ+YALYPHM+VYQNMAFGLKLRKV K EIDR Sbjct: 61 NLYIGDRRVNDVPPKDRDIAMVFQNYALYPHMTVYQNMAFGLKLRKVPKAEIDR------ 114 Query: 121 RNYMFIRVKFASQAALTLIVSKAHLVEKCDKIGEKSKSGG 160 RV+ A++ I+ AHL+++ K+ SGG Sbjct: 115 ------RVQEAAK-----ILDIAHLLDR----KPKALSGG 139 >B7DP02.1 B7DP02_9BACL ABC transporter related protein Length = 384 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 21/160 (13%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA V LEHI+K YPG + TV D NLDI+DKEF V VGPSGCGK+TTLRMIAGLE+I+EG Sbjct: 1 MARVLLEHIYKTYPGQTEPTVKDFNLDIQDKEFTVFVGPSGCGKTTTLRMIAGLEDITEG 60 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDRVILFFY 120 +YIGDR VNDV PKDRDIAMVFQ+YALYPHM+VYQNMAFGLKLRKV K EIDR Sbjct: 61 NLYIGDRRVNDVPPKDRDIAMVFQNYALYPHMTVYQNMAFGLKLRKVPKAEIDR------ 114 Query: 121 RNYMFIRVKFASQAALTLIVSKAHLVEKCDKIGEKSKSGG 160 RV+ A++ I+ AHL+++ K+ SGG Sbjct: 115 ------RVQEAAK-----ILDIAHLLDR----KPKALSGG 139 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 880,865,754 Number of extensions: 32087507 Number of successful extensions: 283503 Number of sequences better than 1.0e-05: 26356 Number of HSP's gapped: 284894 Number of HSP's successfully gapped: 26395 Length of query: 162 Length of database: 3,060,696,203 Length adjustment: 122 Effective length of query: 40 Effective length of database: 1,911,332,373 Effective search space: 76453294920 Effective search space used: 76453294920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)