BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0035.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD58.1 B1DD58_9BACL Putative uncharacterized protein 246 7e-64 B3KD21.1 B3KD21_9BACI Putative uncharacterized protein 239 1e-61 A8MIU2.1 A8MIU2_ALKOO Putative uncharacterized protein 223 8e-57 A9KMF9.1 A9KMF9_CLOPH Putative uncharacterized protein 174 4e-42 Q2B3Q1.1 Q2B3Q1_9BACI Putative uncharacterized protein 163 1e-38 >B1DD58.1 B1DD58_9BACL Putative uncharacterized protein Length = 218 Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 124/218 (56%), Positives = 155/218 (71%), Gaps = 1/218 (0%) Query: 4 MQIQLGDQTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESX 63 M+IQL + T+ ++V YG +KK+ LQ+D +G I VKAP S+E+I+ AV++H + I+ Sbjct: 1 MKIQLDNYTIDVNVLYGVRKKLYLQMDSMGHITVKAPNDTSDEVIQQAVKQHEKEIVSRL 60 Query: 64 XXXXXXXXXX-XXKEYQGEDKFLYLGKEYLLHELINTSEQDVXXXXXXXXXFYFASLKKI 122 +EY+ E +FL+LGK Y LHELI T FYFAS KK+ Sbjct: 61 QAIEKVQAAAPKTREYEDEGRFLHLGKYYSLHELIETEGLTEEELKLNLRKFYFASCKKV 120 Query: 123 VAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEVIDYVIIHELC 182 VA RI YQ LKVKPKS++IVES TKWGSCS+ KKLTFNYRLAMAP+EVIDYVIIHELC Sbjct: 121 VAERIKPYQEKLKVKPKSVDIVESATKWGSCSSSKKLTFNYRLAMAPVEVIDYVIIHELC 180 Query: 183 HLLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 HL HMNHDRSFWR +GS+MPDY++K A+LAR GQ +TL Sbjct: 181 HLTHMNHDRSFWRLVGSIMPDYKDKEAYLARYGQALTL 218 >B3KD21.1 B3KD21_9BACI Putative uncharacterized protein Length = 217 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/217 (54%), Positives = 147/217 (67%) Query: 4 MQIQLGDQTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESX 63 M+IQ+G+ ++ HV+YG +KK+S+ + GLI VKAP S+E + +AV RHG I++ Sbjct: 1 MKIQVGELQIECHVEYGPRKKLSIHVHPSGLITVKAPNRTSDETVINAVRRHGSKIVKQL 60 Query: 64 XXXXXXXXXXXXKEYQGEDKFLYLGKEYLLHELINTSEQDVXXXXXXXXXFYFASLKKIV 123 K Y+ E KFL+LG+ Y LHELI T + FYF S KK++ Sbjct: 61 HAIEAARTAPKVKAYEDEGKFLHLGQYYSLHELIETDGRTEEELQRDLKKFYFVSCKKVI 120 Query: 124 AGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEVIDYVIIHELCH 183 A RI YQ LKV P+S I ES+TKWGSCS+ K LTFNYRLAMAP+EVIDYV+IHELCH Sbjct: 121 AERIRIYQKQLKVTPRSFIIEESKTKWGSCSSAKHLTFNYRLAMAPIEVIDYVVIHELCH 180 Query: 184 LLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 LLHMNHDRSFWR +GSVM DY+ K AFLA+ G MTL Sbjct: 181 LLHMNHDRSFWRCVGSVMKDYKAKEAFLAKYGHAMTL 217 >A8MIU2.1 A8MIU2_ALKOO Putative uncharacterized protein Length = 236 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 143/217 (65%) Query: 4 MQIQLGDQTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESX 63 M+I+ + T++ +Q+GK+KK+++ ID +G I VKAP SE++I +AV ++ +WI + Sbjct: 1 MRIETENNTIEFDIQFGKRKKLAIHIDTIGRITVKAPKNTSEDIIINAVRQNEKWIQDKL 60 Query: 64 XXXXXXXXXXXXKEYQGEDKFLYLGKEYLLHELINTSEQDVXXXXXXXXXFYFASLKKIV 123 + Y + KFLYLGKEY LHELI+T FY KKI+ Sbjct: 61 EEILKLKKSLEIRSYDEQGKFLYLGKEYFLHELIDTEGLSEEALKGNLNKFYRTQCKKII 120 Query: 124 AGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEVIDYVIIHELCH 183 RI YQ L VKPK +E + +++WGSC+ +K++ FNYRL MAP+E IDYVI+HELCH Sbjct: 121 EQRIQIYQEQLGVKPKVVEFGDYKSQWGSCNTNKRIAFNYRLIMAPLEAIDYVIVHELCH 180 Query: 184 LLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 LLHMNHDRSFWRR+GS++PDY+E+ FLA G+ +T Sbjct: 181 LLHMNHDRSFWRRVGSILPDYKERQKFLATNGRRLTF 217 >A9KMF9.1 A9KMF9_CLOPH Putative uncharacterized protein Length = 217 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 132/217 (60%) Query: 4 MQIQLGDQTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESX 63 M+I L D+++ +QY K K +L GLI +KAP ++ E I + ++ + + +L+ Sbjct: 1 MEIILNDKSISFQIQYTKASKFNLDFSPEGLITLKAPKKSTMEEINAFMKSNSKVLLKFE 60 Query: 64 XXXXXXXXXXXXKEYQGEDKFLYLGKEYLLHELINTSEQDVXXXXXXXXXFYFASLKKIV 123 K Y+ ++ FL+LGK + L +L++ + FY A K+I+ Sbjct: 61 ERMSNRTYLSSVKTYESDENFLFLGKVHKLSDLLSEIPETEDGVQEALKKFYTAKTKEII 120 Query: 124 AGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEVIDYVIIHELCH 183 R+ Y+ +++VK K +IV+S WG+C+++K+LTFNY+L+MA + +DYV+IHELCH Sbjct: 121 TERLAIYEPIIEVKAKGFKIVDSPATWGTCNSNKQLTFNYKLSMARLSAVDYVVIHELCH 180 Query: 184 LLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 ++H+NHDRSFWR++G DY+ +LAR G FMT+ Sbjct: 181 IMHLNHDRSFWRKVGMYDKDYKTHQEYLARFGAFMTI 217 >Q2B3Q1.1 Q2B3Q1_9BACI Putative uncharacterized protein Length = 235 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 18/228 (7%) Query: 11 QTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESXXXXXXXX 70 +T+ + + +K + ID +G I ++ P G +E + VE +WILE+ Sbjct: 8 ETISFQIVHKNRKSAGIYIDGLGHIEIRVPKGTKDESVLKLVEERWDWILENTQEMKDRL 67 Query: 71 XXXXXKEYQGEDKFLYLGKEYLLHELINTS-EQDVXXX-----------------XXXXX 112 + Y ++KFLYLGK Y + I+ EQD Sbjct: 68 QGPKERSYDRDEKFLYLGKSYPIEVTIDAGVEQDYAAVDGDKLRIFVKQPGDEQIQQALK 127 Query: 113 XFYFASLKKIVAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEV 172 FY+ K +V I Q K+KP+SI I +S T WG+C + ++LTFN++LAMAP +V Sbjct: 128 RFYYQQCKALVEKNIQANQQYFKMKPQSIRISDSPTTWGTCDSSRRLTFNWKLAMAPPKV 187 Query: 173 IDYVIIHELCHLLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 I+YV+IHE+CH++HMNHDRSFWR +G MPDY+E+ +LA MT+ Sbjct: 188 IEYVVIHEMCHMMHMNHDRSFWRLVGKRMPDYKEQERWLALSSWQMTV 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,079,234,386 Number of extensions: 35538060 Number of successful extensions: 73513 Number of sequences better than 1.0e-05: 857 Number of HSP's gapped: 73270 Number of HSP's successfully gapped: 859 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)