BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0078.0032.p
         (41 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3G6I5.1 C3G6I5_BACTU Putative uncharacterized protein                 56   1e-06
B3Z5H3.1 B3Z5H3_BACCE Putative uncharacterized protein                 56   1e-06
C2WFS7.1 C2WFS7_BACCE Putative uncharacterized protein                 53   9e-06

>C3G6I5.1 C3G6I5_BACTU Putative uncharacterized protein
          Length = 41

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 1  MKKEYSKPALEVLDVKMTMAGPGVAIVDAFQDDPDEVQHYS 41
          MKK+++ P LEVLD+ MTMAGPG+   DA Q D DEV HYS
Sbjct: 1  MKKDWTIPTLEVLDINMTMAGPGLKTPDAVQPDIDEVVHYS 41


>B3Z5H3.1 B3Z5H3_BACCE Putative uncharacterized protein
          Length = 41

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 1  MKKEYSKPALEVLDVKMTMAGPGVAIVDAFQDDPDEVQHYS 41
          MKK+++ P LEVLD+ MTMAGPG+   DA Q D DEV HYS
Sbjct: 1  MKKDWTIPTLEVLDINMTMAGPGLKTPDAVQPDIDEVVHYS 41


>C2WFS7.1 C2WFS7_BACCE Putative uncharacterized protein
          Length = 41

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 28/41 (68%)

Query: 1  MKKEYSKPALEVLDVKMTMAGPGVAIVDAFQDDPDEVQHYS 41
          MKKE+  P LEVLD+ MTMAGPG    DA Q DPD+   YS
Sbjct: 1  MKKEWQTPVLEVLDINMTMAGPGRKTPDAVQPDPDDPVKYS 41


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 263,086,126
Number of extensions: 6219770
Number of successful extensions: 11252
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11252
Number of HSP's successfully gapped: 4
Length of query: 41
Length of database: 3,060,696,203
Length adjustment: 15
Effective length of query: 26
Effective length of database: 2,919,380,978
Effective search space: 75903905428
Effective search space used: 75903905428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)