BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0031.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BAS4.1 C3BAS4_BACMY HPr kinase 290 1e-76 C3AT81.1 C3AT81_BACMY HPr kinase 290 2e-76 C3BSN5.1 C3BSN5_9BACI HPr kinase 289 2e-76 C3AEH8.1 C3AEH8_BACMY HPr kinase 288 4e-76 C2Z0U2.1 C2Z0U2_BACCE HPr kinase 266 2e-69 >C3BAS4.1 C3BAS4_BACMY HPr kinase Length = 309 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 195/308 (63%), Gaps = 1/308 (0%) Query: 1 MASTVQGLAYKAFGLHIHSEFXXXXXXXXXXXXXIGSVSVIQGDLKERWEAIPKITPSLG 60 M TV+ YKAFGL + SE V + DL + W + Sbjct: 1 MIHTVKKEIYKAFGLALLSEIPLPELPQVSNYENEVDVKIETADLSQLWGELSSPKSVFV 60 Query: 61 VSGHEVMFESKDTAIFAIEDGNTITVSPAPGADPDCIRLFILGSCMGILLMQKQILPLHG 120 V +MF+ +TA F I++G I VSP G+D D IRL+ILG+CMG LLMQ++ILPLHG Sbjct: 61 VEEELIMFQIPETATFCIQNGEKIIVSPMKGSDQDKIRLYILGTCMGALLMQRKILPLHG 120 Query: 121 SALVIDGKAYALVGRSGAGKSTLASYLMDQGNPLISDDVIPV-MVHNGYPFAVPGYPQQK 179 SA+ I+GKAYA VGRSGAGKSTLAS L+ +G L+SDDVI V + + PF P YPQQK Sbjct: 121 SAIAINGKAYAFVGRSGAGKSTLASALLSKGYQLLSDDVIAVSLSEDNTPFVTPSYPQQK 180 Query: 180 LWQQSLDYLGMNSSLYRPLFERETKFAVPVHDRFHGEPLQLAGLFELSAAPEAPVSLQPI 239 LW++SLD GM ++ Y+PLFERETK+AVPV F EPL LAG+FEL V LQ I Sbjct: 181 LWKESLDQFGMETAHYQPLFERETKYAVPVTANFFEEPLPLAGVFELVKVENGDVELQQI 240 Query: 240 QGLERFHTLYHHTYQRAIVDRIGIREWHFGMLASFVGRLPMYRLTRPEQGFSAPQQTSLI 299 +GLER TL HTY+ +++ R+G+ EWHF + V ++ M++L RP F+A S I Sbjct: 241 EGLERLRTLLRHTYRNSLIPRLGMMEWHFMHSTNIVNKIDMFQLRRPISKFTANDLVSKI 300 Query: 300 LEALQQQQ 307 LE+L++++ Sbjct: 301 LESLKEEE 308 >C3AT81.1 C3AT81_BACMY HPr kinase Length = 309 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 195/308 (63%), Gaps = 1/308 (0%) Query: 1 MASTVQGLAYKAFGLHIHSEFXXXXXXXXXXXXXIGSVSVIQGDLKERWEAIPKITPSLG 60 M TV+ YKAFGL + SE V + DL + W + Sbjct: 1 MIHTVKKEIYKAFGLALLSEIPLPELPQVSNYENEVDVKIETADLSQLWGELSSPKSVFV 60 Query: 61 VSGHEVMFESKDTAIFAIEDGNTITVSPAPGADPDCIRLFILGSCMGILLMQKQILPLHG 120 V +MF+ +TA F I++G I VSP G+D D IRL+ILG+CMG LLMQ++ILPLHG Sbjct: 61 VEEELIMFQIPETATFCIQNGEKIIVSPMKGSDQDKIRLYILGTCMGALLMQRKILPLHG 120 Query: 121 SALVIDGKAYALVGRSGAGKSTLASYLMDQGNPLISDDVIPV-MVHNGYPFAVPGYPQQK 179 SA+ I+GKAYA VGRSGAGKSTLAS L+ +G L+SDDVI V + + PF P YPQQK Sbjct: 121 SAIAINGKAYAFVGRSGAGKSTLASALLSKGYQLLSDDVIAVSLSEDNTPFVTPSYPQQK 180 Query: 180 LWQQSLDYLGMNSSLYRPLFERETKFAVPVHDRFHGEPLQLAGLFELSAAPEAPVSLQPI 239 LW++SLD GM ++ Y+PLFERETK+AVPV F EPL LAG+FEL V LQ I Sbjct: 181 LWKESLDQFGMETAHYQPLFERETKYAVPVTANFFEEPLPLAGVFELVKVENGDVELQQI 240 Query: 240 QGLERFHTLYHHTYQRAIVDRIGIREWHFGMLASFVGRLPMYRLTRPEQGFSAPQQTSLI 299 +GLER TL HTY+ +++ R+G+ EWHF + V ++ M++L RP F+A S I Sbjct: 241 EGLERLRTLLRHTYRNSLIPRLGMMEWHFMHSTNIVNKIDMFQLRRPISKFTAHDLVSKI 300 Query: 300 LEALQQQQ 307 LE+L++++ Sbjct: 301 LESLKEEE 308 >C3BSN5.1 C3BSN5_9BACI HPr kinase Length = 309 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 195/308 (63%), Gaps = 1/308 (0%) Query: 1 MASTVQGLAYKAFGLHIHSEFXXXXXXXXXXXXXIGSVSVIQGDLKERWEAIPKITPSLG 60 M TV+ YKAFGL + SE V + DL + W + Sbjct: 1 MIHTVKKEIYKAFGLALLSEIPLPELPQVSNYENEVDVKIETADLSQLWGELSSPKSVFV 60 Query: 61 VSGHEVMFESKDTAIFAIEDGNTITVSPAPGADPDCIRLFILGSCMGILLMQKQILPLHG 120 V +MF+ +TA F I++G I VSP G+D D IRL+ILG+CMG LLMQ++ILPLHG Sbjct: 61 VEEELIMFQIPETATFCIQNGEKIIVSPMKGSDQDKIRLYILGTCMGALLMQRKILPLHG 120 Query: 121 SALVIDGKAYALVGRSGAGKSTLASYLMDQGNPLISDDVIPV-MVHNGYPFAVPGYPQQK 179 SA+ I+GKAYA VGRSGAGKSTLAS L+ +G L+SDDVI V + + PF P YPQQK Sbjct: 121 SAIAINGKAYAFVGRSGAGKSTLASALLSKGYQLLSDDVIAVSLSEDNIPFVTPSYPQQK 180 Query: 180 LWQQSLDYLGMNSSLYRPLFERETKFAVPVHDRFHGEPLQLAGLFELSAAPEAPVSLQPI 239 LW++SLD GM ++ Y+PLFERETK+AVPV F EPL LAG+FEL V LQ I Sbjct: 181 LWKESLDQFGMETAHYQPLFERETKYAVPVTANFFEEPLPLAGVFELVKVENGDVELQQI 240 Query: 240 QGLERFHTLYHHTYQRAIVDRIGIREWHFGMLASFVGRLPMYRLTRPEQGFSAPQQTSLI 299 +GLER TL HTY+ +++ R+G+ EWHF + V ++ M++L RP F+A S I Sbjct: 241 EGLERLRTLLRHTYRNSLIPRLGMMEWHFMHSTNIVNKIDMFQLRRPISKFTAHDLVSKI 300 Query: 300 LEALQQQQ 307 LE+L++++ Sbjct: 301 LESLKEEE 308 >C3AEH8.1 C3AEH8_BACMY HPr kinase Length = 312 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/308 (47%), Positives = 194/308 (62%), Gaps = 1/308 (0%) Query: 1 MASTVQGLAYKAFGLHIHSEFXXXXXXXXXXXXXIGSVSVIQGDLKERWEAIPKITPSLG 60 M TV+ YKAFGL + SE V + DL + W + Sbjct: 4 MIHTVKKEIYKAFGLALLSEIPLPELPQVSNYENEVDVKIETADLSQLWGELSSPKSVFV 63 Query: 61 VSGHEVMFESKDTAIFAIEDGNTITVSPAPGADPDCIRLFILGSCMGILLMQKQILPLHG 120 V +MF+ +TA F I++G I VSP G+D D IRL+ILG+CMG LLMQ++ILPLHG Sbjct: 64 VEEELIMFQIPETATFCIQNGEKIIVSPMKGSDQDKIRLYILGTCMGALLMQRKILPLHG 123 Query: 121 SALVIDGKAYALVGRSGAGKSTLASYLMDQGNPLISDDVIPV-MVHNGYPFAVPGYPQQK 179 S + I+GKAYA VGRSGAGKSTLAS L+ +G L+SDDVI V + + PF P YPQQK Sbjct: 124 SVIAINGKAYAFVGRSGAGKSTLASALLSKGYKLLSDDVIAVSLSEDNTPFVTPSYPQQK 183 Query: 180 LWQQSLDYLGMNSSLYRPLFERETKFAVPVHDRFHGEPLQLAGLFELSAAPEAPVSLQPI 239 LW++SLD GM ++ Y+PLFERETK+AVPV F EPL LAG+FEL V LQ I Sbjct: 184 LWKESLDQFGMETAHYQPLFERETKYAVPVTANFFEEPLPLAGVFELVKVENGDVELQQI 243 Query: 240 QGLERFHTLYHHTYQRAIVDRIGIREWHFGMLASFVGRLPMYRLTRPEQGFSAPQQTSLI 299 +GLER TL HTY+ +++ R+G+ EWHF + V ++ M++L RP F+A S I Sbjct: 244 EGLERLRTLLRHTYRNSLIPRLGMMEWHFMHSTNIVNKIDMFQLRRPISKFTAHDLVSKI 303 Query: 300 LEALQQQQ 307 LE+L++++ Sbjct: 304 LESLKEEE 311 >C2Z0U2.1 C2Z0U2_BACCE HPr kinase Length = 309 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 186/301 (61%), Gaps = 2/301 (0%) Query: 7 GLAYKAFGLHIHSEFXXXXXXXXXXXXXIGSVSVIQGDLKERWEAIPKITPSLGVSGHEV 66 + YKAFGL I S+ + V DL E W + + V Sbjct: 7 NIVYKAFGLFIISDISLPELPNVQNKMDSIDIEVRIKDLSELWMDLADKQDEFVIKKDLV 66 Query: 67 MFESKDTAIFAIEDGNTITVSPAPGADPDCIRLFILGSCMGILLMQKQILPLHGSALVID 126 MF+ D AIFAI+DGN I VSP + D IRL+ILG+CMG +LMQ+++ PLHGSA++I+ Sbjct: 67 MFQVPDIAIFAIQDGNKIFVSPMKEYEEDMIRLWILGTCMGAILMQRKVYPLHGSAVIIN 126 Query: 127 GKAYALVGRSGAGKSTLASYLMDQGNPLISDDVIPVMVHN--GYPFAVPGYPQQKLWQQS 184 GKAYA VG SGAGKSTLAS + +G +SDDVI + + P +P YPQQKLWQ S Sbjct: 127 GKAYAFVGDSGAGKSTLASAFIQEGYQFLSDDVIAIAFSSDTNSPVVIPSYPQQKLWQDS 186 Query: 185 LDYLGMNSSLYRPLFERETKFAVPVHDRFHGEPLQLAGLFELSAAPEAPVSLQPIQGLER 244 LD LGM ++ YR ++ RETK+ VPV ++ E + L G+ EL + V ++ I+ LER Sbjct: 187 LDNLGMGTNNYRSIYGRETKYNVPVLSKYIAESVPLEGIVELVKTEDGKVGIRHIEKLER 246 Query: 245 FHTLYHHTYQRAIVDRIGIREWHFGMLASFVGRLPMYRLTRPEQGFSAPQQTSLILEALQ 304 F+TLY HT++ ++ +G+ EWHF + A+ + ++ ++ L RPE+G+SAPQ SLIL + Sbjct: 247 FYTLYRHTFRNFLIQGLGLMEWHFTISAAILTKVDLFELCRPERGYSAPQLVSLILTTIN 306 Query: 305 Q 305 + Sbjct: 307 K 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,903,913,650 Number of extensions: 83003258 Number of successful extensions: 329664 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 329578 Number of HSP's successfully gapped: 85 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)