BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0015.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KH46.1 B3KH46_9BACI Putative uncharacterized protein 271 4e-71 B1D5M8.1 B1D5M8_9BACL Putative uncharacterized protein 266 8e-70 B1D5M7.1 B1D5M7_9BACL Putative uncharacterized protein 252 2e-65 A6NVJ0.1 A6NVJ0_9BACE Putative uncharacterized protein 65 6e-09 B4BBV9.1 B4BBV9_CLOTM Putative uncharacterized protein 60 2e-07 >B3KH46.1 B3KH46_9BACI Putative uncharacterized protein Length = 229 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 133/233 (57%), Positives = 163/233 (69%), Gaps = 9/233 (3%) Query: 4 KKMIIATMVFGMAVTGSAGVYAGTNLQKISAYLNHSIGFKVNGAAYTPVDNNGKKLAPIT 63 KK I A V GM +TG+AGVYAG NL+KISAYLNHSIG +V+G Y N GKKL PIT Sbjct: 5 KKSIAAVAVLGMTLTGAAGVYAGANLEKISAYLNHSIGIQVDGTVY----NTGKKLTPIT 60 Query: 64 YNDTTYLPVRAMADALKVPVTFDPSTNQVVLGSGAGTTTPGNGSAVTLAAVQYSAAQKEA 123 Y +TTYLPVRA+AD L+VPV +D NQV++GS PGNG + L V YS AQ + Sbjct: 61 YQNTTYLPVRAIADVLEVPVRYDAKNNQVLIGS-----NPGNGQTIELTNVNYSDAQLKE 115 Query: 124 ITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDISPRDYAYEYDGTT 183 I AF+ F GF+T YAP QM GD +Q+ +DGV +F HM+V ISPRDY++ YD Sbjct: 116 IKSAFAKFDGFQTPYAPSQMVKGDVYQRTGASADGVNMVFKHMTVYISPRDYSHGYDSKP 175 Query: 184 VKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVAAGVAKL 236 V LS G KWYTP D ML F+++DR+VT+SSPD +LSKAQLE+VA VA+L Sbjct: 176 VTLSNGVKAKWYTPDDTDMLGFQINDRFVTISSPDHSLSKAQLEKVAVSVAQL 228 >B1D5M8.1 B1D5M8_9BACL Putative uncharacterized protein Length = 493 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 132/233 (56%), Positives = 168/233 (72%), Gaps = 10/233 (4%) Query: 2 KSKKMIIATMVF-GMAVTGSAGVYAGTNLQKISAYLNHSIGFKVNGAAYTPVDNNGKKLA 60 K+ K +ATM+ GM V+G+AGVYAGTN++KISA+LNHSIGFK+NG+ Y P D NG LA Sbjct: 3 KNMKRTVATMMIAGMTVSGAAGVYAGTNMEKISAFLNHSIGFKINGSTYIPKDENGNALA 62 Query: 61 PITYNDTTYLPVRAMADALKVPVTFDPSTNQVVLGSGAGTTTPGNGSAVTLAAVQYSAAQ 120 PITY+DTTYLPVRA+++AL P+ +D TN + +G+ +TT YSAAQ Sbjct: 63 PITYHDTTYLPVRALSNALNTPIQYDSKTNTIYIGT---STTD------QWVLANYSAAQ 113 Query: 121 KEAITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDISPRDYAYEYD 180 + I KAF+ F+GFETAYAP + GD+ QKVA +DGV F +M+V++SPRDY++EYD Sbjct: 114 LDEIKKAFAGFEGFETAYAPQILIKGDALQKVAATADGVNLTFKNMTVNVSPRDYSFEYD 173 Query: 181 GTTVKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVAAGV 233 GT V LS GA KWY + MLT K+DDRYVT+SSP K LSKAQ E+VAA V Sbjct: 174 GTNVTLSNGAKAKWYNVNGTDMLTVKVDDRYVTVSSPSKALSKAQAEKVAATV 226 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/126 (57%), Positives = 93/126 (73%) Query: 111 LAAVQYSAAQKEAITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDI 170 +AAV Y+AAQ + + KAF+ F GFE AYAP GD+ QK A +DGV LF +M++++ Sbjct: 236 MAAVTYTAAQLDEMKKAFANFDGFEAAYAPQVTVKGDALQKTAATADGVNLLFKNMTINV 295 Query: 171 SPRDYAYEYDGTTVKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVA 230 SPRDY++EYDGT V LS GA KWY + MLT K+DDRYVT+SSP+KTL+KAQ E+VA Sbjct: 296 SPRDYSFEYDGTNVTLSNGAKAKWYNVNGTDMLTVKVDDRYVTVSSPNKTLTKAQAEKVA 355 Query: 231 AGVAKL 236 VAK+ Sbjct: 356 VSVAKV 361 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 73/126 (57%), Positives = 90/126 (71%), Gaps = 1/126 (0%) Query: 111 LAAVQYSAAQKEAITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDI 170 LA V Y+AAQ +AI F+ F GF AYAP +M D+FQKVAGG D V F F HM+V I Sbjct: 368 LATVTYTAAQTKAIKDEFAKFDGFTAAYAPTKMAKDDAFQKVAGG-DSVNFWFKHMNVQI 426 Query: 171 SPRDYAYEYDGTTVKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVA 230 SPRDY+ YD T V L+ G KW+ PS ML+F++DDRYVT+SS D +L+KAQ+EQ+A Sbjct: 427 SPRDYSVGYDSTAVTLANGVKAKWFAPSGTAMLSFQIDDRYVTISSADNSLTKAQIEQIA 486 Query: 231 AGVAKL 236 GVAKL Sbjct: 487 TGVAKL 492 >B1D5M7.1 B1D5M7_9BACL Putative uncharacterized protein Length = 493 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/236 (51%), Positives = 164/236 (69%), Gaps = 10/236 (4%) Query: 2 KSKKMIIATMVF-GMAVTGSAGVYAGTNLQKISAYLNHSIGFKVNGAAYTPVDNNGKKLA 60 K+ K +ATM+ GM V+G+AG +AGTN++KISA+LNH IGF +NG+ Y P D +G KL+ Sbjct: 3 KNMKRTVATMMIAGMTVSGAAGAFAGTNMEKISAFLNHGIGFIINGSTYIPKDEDGNKLS 62 Query: 61 PITYNDTTYLPVRAMADALKVPVTFDPSTNQVVLGSGAGTTTPGNGSAVTLAAVQYSAAQ 120 PITY+DTTYLPVRA+++AL P+ +D TN + +G+ A Y+AAQ Sbjct: 63 PITYHDTTYLPVRALSNALNTPIQYDSRTNTIYIGTSATDQ---------WVLTNYTAAQ 113 Query: 121 KEAITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDISPRDYAYEYD 180 + I KAF+ F GFE AYAP M GD+ QK A SDGV LF++M+V++SPRDY+++YD Sbjct: 114 LDQIVKAFAGFDGFEAAYAPQMMIKGDALQKAAATSDGVNLLFTNMTVNVSPRDYSHDYD 173 Query: 181 GTTVKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVAAGVAKL 236 GT V LS GA KWY + MLT K+DDRYVT+SSP+ L+K+Q+E+ A V K+ Sbjct: 174 GTNVTLSNGAKAKWYNVNGKDMLTVKVDDRYVTVSSPNGKLNKSQMEKAAVSVTKV 229 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/126 (59%), Positives = 90/126 (71%), Gaps = 1/126 (0%) Query: 111 LAAVQYSAAQKEAITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDI 170 LA V Y+ AQ AI F+ F GF AYAP MT D+FQKVAGG D V FLF HM+V I Sbjct: 368 LAKVTYTTAQTNAIKDEFAKFDGFTAAYAPTLMTKNDAFQKVAGG-DSVNFLFKHMNVQI 426 Query: 171 SPRDYAYEYDGTTVKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVA 230 SPRDY+ YDGT V L G KW+TPS ML+F++DDRYVT+SS D +L+KAQ+EQVA Sbjct: 427 SPRDYSVGYDGTAVTLPNGVKAKWFTPSKTAMLSFQMDDRYVTISSADNSLTKAQIEQVA 486 Query: 231 AGVAKL 236 G+A+L Sbjct: 487 TGIARL 492 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 67/126 (53%), Positives = 89/126 (70%) Query: 111 LAAVQYSAAQKEAITKAFSAFQGFETAYAPLQMTSGDSFQKVAGGSDGVRFLFSHMSVDI 170 L V Y+AAQ + + KAF++F GFE AYAP M +GD +K +DGV +F +M+V + Sbjct: 236 LVKVLYTAAQLDELKKAFASFDGFEEAYAPQMMVNGDVLKKTVAAADGVNIIFENMTVTV 295 Query: 171 SPRDYAYEYDGTTVKLSTGAAGKWYTPSDIPMLTFKLDDRYVTLSSPDKTLSKAQLEQVA 230 SPRDY+Y+Y+GT V LS G KWY D MLT K+DDRYVTLSSP+ L++A+LE+VA Sbjct: 296 SPRDYSYDYEGTPVTLSNGTKAKWYKAGDTLMLTLKVDDRYVTLSSPNANLTQARLEKVA 355 Query: 231 AGVAKL 236 VAK+ Sbjct: 356 VTVAKV 361 >A6NVJ0.1 A6NVJ0_9BACE Putative uncharacterized protein Length = 562 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 6/97 (6%) Query: 1 MKSKKM---IIATMVFGMAVTGSAGVYAGTNLQKISAYLNHSIGFKVNGAAYTPVDNNGK 57 M K+M +IA ++ G+ G+ A + +Q+I A L I +V+G A T D NGK Sbjct: 1 MDMKRMRTAVIAAVLLGVLAIGAG---AASGIQQIIADLRPDITVEVDGMARTMTDKNGK 57 Query: 58 KLAPITYNDTTYLPVRAMADALKVPVTFDPSTNQVVL 94 + PI+Y TTYLPVRA+ + L V +D +T V++ Sbjct: 58 TVYPISYEGTTYLPVRALGEILGQTVEWDSATQTVIM 94 >B4BBV9.1 B4BBV9_CLOTM Putative uncharacterized protein Length = 248 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 1 MKSKKMIIATMVFGMAVTGSAGVYAGTNLQ-KISAYLNHSIGFKVNGAAYTPVDNNGKKL 59 MK K + + G+ V S + G++L +I A L+ + K G D G + Sbjct: 1 MKRKTFLQIFALMGVFVLCSGVIAFGSSLTTEIKAILSREVTIKYEGEVQNMKDGLGNPV 60 Query: 60 APITYNDTTYLPVRAMADALKVPVTFDPSTNQVVLGS 96 P+ YN TTYLP+RA++D L +P+ ++ +T V+LG+ Sbjct: 61 YPLMYNGTTYLPIRAVSDMLNIPIEWEAATKTVILGT 97 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.128 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,372,651,966 Number of extensions: 58529756 Number of successful extensions: 122173 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 122170 Number of HSP's successfully gapped: 16 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)