BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0012.p (440 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5M1.1 B1D5M1_9BACL Transcriptional regulator protein-like pro... 524 e-147 B3KE45.1 B3KE45_9BACI Transcriptional regulator protein-like pro... 506 e-141 C0ZGJ8.1 C0ZGJ8_BREBN Putative uncharacterized protein 432 e-119 A4XFJ1.1 A4XFJ1_CALS8 Putative uncharacterized protein 116 4e-24 B9MQD7.1 B9MQD7_ANATD Putative uncharacterized protein 95 2e-17 >B1D5M1.1 B1D5M1_9BACL Transcriptional regulator protein-like protein Length = 450 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/439 (58%), Positives = 328/439 (74%), Gaps = 4/439 (0%) Query: 1 MAKESFDKEIQFLRMLVLTSGAYSRQQFAERLGISVHTFDKTLKKLKEVANTLLEQPPEA 60 MAKESFDKEIQFLRMLVLTSGAY+RQQFA+RLGISVHTFDKT+++LK++A ++ + E Sbjct: 1 MAKESFDKEIQFLRMLVLTSGAYNRQQFADRLGISVHTFDKTIRRLKDIAGSVQQPAAEE 60 Query: 61 QGQVFTDAFRSNYYESADPLLLFLFQAKSLKETESLRISRILAALNDSQELSMRDLLDIC 120 Q + D R++YYESADPLLLFLF++KSLKE+ES R+S ++A+L + Q L+ +LLD+C Sbjct: 61 QNKAMADMLRTSYYESADPLLLFLFRSKSLKESESYRLSLLIASLQE-QALTPLELLDLC 119 Query: 121 CSGLDLDSAFPDEKTIRGDLKYLEEVGAIVKGAGPRPYRYRLNNDLVRQLSREELLDLFD 180 G+ + A PDEKTIR DLKYLE+ G I + G RP +Y +ND V LS EEL DL+ Sbjct: 120 FEGMPAELAPPDEKTIRSDLKYLEQAGVIRRLPGGRPQKYTAHNDFVSILSDEELSDLYA 179 Query: 181 FVDIMANTQLPSVQGYLLRDSLKKELVRQDEEKQAIEPFLYKYHYYSRILDEAHLSVLLS 240 FVD+MANTQ+PSVQGYLLRDSLKK + + A + FLYKYHY+SRILDEAHL ++ Sbjct: 180 FVDVMANTQVPSVQGYLLRDSLKKAMKLRQLPDGASDLFLYKYHYHSRILDEAHLYTIMQ 239 Query: 241 AIRGRRKVQFLYFSPKASTSYASQNTNPLFERESSGRTETALPLKIVYDHQYGRWYLLTH 300 AI RRK+ F YF+PK++ SY S+NTNP+F + S GR LPLK+ YDHQYGRWYLL + Sbjct: 240 AIESRRKLSFHYFTPKSNQSYHSKNTNPMFVKPSEGRLAEMLPLKVAYDHQYGRWYLLGY 299 Query: 301 SKHQG-IRKYRLEGMMQIEAGETVAEELFLAEKSALEQKISTSWLIDTGRPVTVRAKFLN 359 S + + +R+EG+ Q+E V EE + + +ALE+ S SWL+D RP +V+ +F N Sbjct: 300 SSGRSQVAIFRMEGITQLEESGLVTEEEYAVKLAALERNTSYSWLVDLSRPASVKVRFFN 359 Query: 360 PQRRDSARNFVKERVLLQGQWGTITEEALHFFIYEITVNGTTEIKPWLRSFGSSCEVLAP 419 P+ + RNF+K+RV LQGQWG ITEE F++EITVNGT EIKPWLRSFGSSCEVL P Sbjct: 360 PE--GAKRNFIKDRVQLQGQWGVITEEDEASFLFEITVNGTQEIKPWLRSFGSSCEVLEP 417 Query: 420 RQLREELVAEWKEILDYYE 438 LR E + EWKE+ +YYE Sbjct: 418 MSLRREFIKEWKELAEYYE 436 >B3KE45.1 B3KE45_9BACI Transcriptional regulator protein-like protein Length = 443 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/438 (57%), Positives = 316/438 (72%), Gaps = 3/438 (0%) Query: 1 MAKESFDKEIQFLRMLVLTSGAYSRQQFAERLGISVHTFDKTLKKLKEVANTLLEQPPEA 60 MA+ESFDKEIQFLR+L L GAY+RQQ A+RLGISVHT+DKTL+ LK + +L Q E Sbjct: 1 MARESFDKEIQFLRILALAGGAYNRQQLADRLGISVHTYDKTLRNLKNMIESLQPQLSEE 60 Query: 61 QGQVFTDAFRSNYYESADPLLLFLFQAKSLKETESLRISRILAALNDSQELSMRDLLDIC 120 Q ++ R +YYE+ADPLLL LF+ KSLK +ESLR+S IL L Q+L+ ++L++ C Sbjct: 61 QSLTLSEGLRYSYYETADPLLLLLFRGKSLKASESLRLSMILTQLQ-HQQLTAKELIERC 119 Query: 121 CSGLDLDSAFPDEKTIRGDLKYLEEVGAIVKGAGPRPYRYRLNNDLVRQLSREELLDLFD 180 PDEKTIRGDLKYLEEVG IVK RPYRYR DL+ LS +ELLDL+D Sbjct: 120 GDQFPDGETLPDEKTIRGDLKYLEEVGVIVKTGAERPYRYRGARDLIDSLSDDELLDLYD 179 Query: 181 FVDIMANTQLPSVQGYLLRDSLKKELVRQDEEKQAIEPFLYKYHYYSRILDEAHLSVLLS 240 +VD+M+NTQLPSVQGY+LRD+LK+ L +D ++ ++YKYHY+SRILDEAHL + Sbjct: 180 YVDVMSNTQLPSVQGYMLRDNLKRALRNRDIAAHSVPAYIYKYHYHSRILDEAHLHTIFQ 239 Query: 241 AIRGRRKVQFLYFSPKASTSYASQNTNPLFERESSGRTETALPLKIVYDHQYGRWYLLTH 300 AI R +++FLY SPK+S+ YAS+NTNPLF RES G ET LPL+++YDHQYGRWYL+ H Sbjct: 240 AISKRARLRFLYLSPKSSSRYASRNTNPLFHRESRGLRETVLPLRVIYDHQYGRWYLIGH 299 Query: 301 SKHQGIRKYRLEGMMQIEAGETVAEELFLAEKSALEQKISTSWLIDTGRPVTVRAKFLNP 360 + QG+ K+R+EG+ QIE GE V EE+F + SW+ DT P V A+F NP Sbjct: 300 NGRQGLMKFRMEGLTQIEEGEVVEEEVFQQRLMETLAEFEHSWVTDTRNPTKVVARFFNP 359 Query: 361 QRRDSARNFVKERVLLQGQWGTITEEALHFFIYEITVNGTTEIKPWLRSFGSSCEVLAPR 420 + S NFV RV QGQWGT+T E+ F+YEI VNGT+EIKPWLRSFGSSCEVL PR Sbjct: 360 E--GSKVNFVLNRVKAQGQWGTVTMESESSFLYEIEVNGTSEIKPWLRSFGSSCEVLQPR 417 Query: 421 QLREELVAEWKEILDYYE 438 LR+E + EWKEI YYE Sbjct: 418 SLRQEFIKEWKEIAAYYE 435 >C0ZGJ8.1 C0ZGJ8_BREBN Putative uncharacterized protein Length = 434 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/440 (50%), Positives = 311/440 (70%), Gaps = 11/440 (2%) Query: 1 MAKESFDKEIQFLRMLVLTSGAYSRQQFAERLGISVHTFDKTLKKLKEVANTLLEQPPEA 60 MA+ESFDKE+Q LR+L LT+GAY+RQQ AERLGISVHT DKT+KKLK++ +T + + Sbjct: 4 MARESFDKELQLLRLLFLTAGAYNRQQLAERLGISVHTLDKTMKKLKDIQSTFYQHVGDE 63 Query: 61 QGQVFTDAFRSNYYESADPLLLFLFQAKSLKETESLRISRILAALNDSQELSMRDLLDIC 120 + + + R NY+E D L+FL+ AKSLK++E R+S IL L Q LS+++LL+ Sbjct: 64 EKKEYYTQLRYNYFEVTDNFLMFLYHAKSLKDSEVERLSHILEKLK-QQPLSIKELLETF 122 Query: 121 CSGLDLDSAFPDEKTIRGDLKYLEEVGAIVKGAGPRPYRYRLNNDLVRQLSREELLDLFD 180 PDEKTIR D+KYLEE+G I + RPY Y+ +++L+ L+ +ELLDL+D Sbjct: 123 V------DTEPDEKTIRQDMKYLEEIGVIKNVSEVRPYVYQFDDELLDSLTDDELLDLYD 176 Query: 181 FVDIMANTQLPSVQGYLLRDSLKKELVRQDEEKQAIEPFLYKYHYYSRILDEAHLSVLLS 240 F+D MANTQLP+V GYLL++ +K+ L + + A FLYKYH+ SRILDE +L Sbjct: 177 FIDFMANTQLPAVPGYLLQEKVKRYLKHRLKLTDA-SAFLYKYHFVSRILDEYQALLLTE 235 Query: 241 AIRGRRKVQFLYFSPKASTSYASQNTNPLFERESSGRTETALPLKIVYDHQYGRWYLLTH 300 AIR R+ V+F Y++PK Y SQNTNP F+R+++G+ + A+PL++++DHQYGRWYLL Sbjct: 236 AIRQRKIVEFHYYTPKRRKFYDSQNTNPTFQRDTTGQHQKAIPLRVIFDHQYGRWYLLAQ 295 Query: 301 SKHQG-IRKYRLEGMMQIEAGETVAEELFLAEKSALEQKISTSWLIDTGRPVTVRAKFLN 359 G +RKYR+EGM ++ G++V E+F + +++ +++I+ SWLIDTG+ VTVR +F Sbjct: 296 GCGNGPLRKYRVEGMTKLVTGKSVTPEIFTSLQASADERIAHSWLIDTGKLVTVRLRFFQ 355 Query: 360 PQRRDSARNFVKERVLLQGQWGTITEEALHFFIYEITVNGTTEIKPWLRSFGSSCEVLAP 419 P RD+ +F++ERV QGQWG +TEE+ F+YEI VN T EI PW+RSFGSS EVL P Sbjct: 356 P--RDTPHSFIQERVEAQGQWGIVTEESRESFVYEINVNSTMEITPWIRSFGSSVEVLEP 413 Query: 420 RQLREELVAEWKEILDYYES 439 LR++ EW+E+L YYES Sbjct: 414 LFLRKQFQKEWEELLAYYES 433 >A4XFJ1.1 A4XFJ1_CALS8 Putative uncharacterized protein Length = 438 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 116/447 (25%), Positives = 209/447 (46%), Gaps = 38/447 (8%) Query: 6 FDKEIQFLRMLVLTSGAYSRQQFAERLGISVHTFDKTLKKLKEVANTLLEQPPEAQGQVF 65 F+K F R++ L G YSR+ AE I TFD+ L++++ E +G+ Sbjct: 11 FNKLRNFSRLVYLY-GCYSRED-AELFRIGKRTFDEELRRMRVFLKENEYLSVEKEGKKV 68 Query: 66 TDAFRSNYYESADPLLLFLFQAKSLKETESLRISRILAALNDSQE--LSMRDLLDICCSG 123 ++++ + L+ ++ +K+ ++ IL LN S++ S +++D C Sbjct: 69 LPCIVEDFFKEVENPLINIYFSKTSTPLQTTLFFIILQILNSSKDKKASTNEIMDKVCFA 128 Query: 124 LDLDSAFPD-EKTIRGDLKYLEEVGAIVKGAGPRPYRYRLNNDLVR---QLSREELLDLF 179 LD + D + +I+ LK ++ +G I R Y L+N + R S++EL +++ Sbjct: 129 LDERTKRKDVDSSIKRTLKEMQRIGVIKFLKKERVYV--LSNTIKRLFSGFSKDELKNIY 186 Query: 180 DFVDIMANTQLPSVQGYLLRDSLKKELVRQDEE---KQAIEPFLYKYHYYSRILDEAHLS 236 V NT +P+V G+ L++SL+K L++ EE ++A + F + Y + ILDE + Sbjct: 187 LSVLFFINTNVPNVPGWFLKESLEKYLLKNGEEEFVQKANQLFWFTYVPHHYILDEELVW 246 Query: 237 VLLSAIRGRRKVQFLYFSPKASTSYASQNTNPLFERESSGRTE-TALPLKIVYDHQYGRW 295 A RK++ Y+ R + R E T +PL+I+YD + GRW Sbjct: 247 KFWQAASSGRKIKVWYYP-----------------RGKNVRKEYTCVPLRIIYDVKLGRW 289 Query: 296 YLLTHSKHQGIRKYRLEGMMQIEA-GETVAEELFLAEKSALEQKISTSWLIDTGRPVTVR 354 Y + + I + + +IE ET + +F +E+ S + ++ Sbjct: 290 YFIVLF-EKAINTFPASRVEKIEILDETFDKNIFKEYWKVIEKCFFVSVPLKKTGFKNIK 348 Query: 355 AKFLNPQRRDSARNFVKERVLLQGQWGTITEEALHFFIYEITVNGTTEIKPWLRSFGSSC 414 +F+ ++++ NFV RV + + I + F+ E ++ E KPWLRSF Sbjct: 349 LRFIFDD-KEASFNFVLNRVKRELKDAKIDIVSQDEFVVEYELSNLKEFKPWLRSFSHRV 407 Query: 415 EV----LAPRQLREELVAEWKEILDYY 437 V +L++E++ EWKEIL Y Sbjct: 408 VVEDGSEDSSKLKQEIIEEWKEILKNY 434 >B9MQD7.1 B9MQD7_ANATD Putative uncharacterized protein Length = 437 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 112/453 (24%), Positives = 201/453 (44%), Gaps = 43/453 (9%) Query: 5 SFDKEIQFLRMLVLTSGAYSRQQFAERLGISVHTFDKTLKKLKEVANTLLEQPPEAQGQV 64 F+K F R + L G YSR+ AE I+ TFD L++++ E +G+ Sbjct: 10 GFNKLRNFTRTVYLY-GCYSRED-AENFNIAKRTFDDELRRIRIFLGEDQYFSAEKEGKK 67 Query: 65 FTDAFRSNYYESADPLLLFLFQAKSLKETESLRISRILAALN--DSQELSMRDLLDICCS 122 N++ + L+ ++ +K+ ++ +L LN ++++ + + + Sbjct: 68 SLPCIVENFFRDVENPLINIYFSKTSTALQTTLFFMVLQILNLSENKKATFTQISNEISQ 127 Query: 123 GLDLDSAFPD-EKTIRGDLKYLEEVGAIVKGAGPRPYRYRLN-NDLVRQLSREELLDLFD 180 LD D A E +++ LK L+ +G + + Y D+++ S +E+ D++ Sbjct: 128 VLDEDVADAGFESSLKRVLKQLQNLGIVKYLKNEKVYMLCSQIKDVLKDFSIDEIKDIYI 187 Query: 181 FVDIMANTQLPSVQGYLLRDSLKKELVRQD-----EEKQAIEPFLYKYHYYSRILDEAHL 235 + NT +P+V G+ L++SL+K L+ ++ + F Y H+Y IL+E + Sbjct: 188 SILFFINTNVPNVPGWYLKESLEKYLLELGEEEFLKDTNRLFWFTYVPHHY--ILEEELV 245 Query: 236 SVLLSAIRGRRKVQFLYFSPKASTSYASQNTNPLFERESSGRTETALPLKIVYDHQYGRW 295 L A +K++ Y+ P +R S + +P++I+YD + GRW Sbjct: 246 WKFLEAASNNKKIKVWYY--------------PRQKRHLSDFS--CIPVRIIYDVKLGRW 289 Query: 296 YLLTHSKHQGIRKYRLEGM--MQIEAGETVAEELFLAEKSALEQKISTSWLID--TGRPV 351 Y + +R L + + E E + E+ + S +KI + + + Sbjct: 290 YFMV------LRGEDLSALPVWRTEKIEILQEDFDPQKISPFVKKIEKCFFVSVPNNKKG 343 Query: 352 TVRAKFLNPQRRDSARNFVKERVLLQGQWGTITEEALHFFIYEITVNGTTEIKPWLRSFG 411 + K + DS NFV RV + + IT+ F E ++ E K WLRSFG Sbjct: 344 FKKIKIMFKCPLDSPYNFVLARVKRELKNARITKIDERTFEVEHDISNIKEFKGWLRSFG 403 Query: 412 SSCEVL----APRQLREELVAEWKEILDYYESF 440 VL A R+L+ E++ EWKEIL Y F Sbjct: 404 ERAVVLDDTEAGRELKTEMINEWKEILRNYGDF 436 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,477,653,921 Number of extensions: 99071372 Number of successful extensions: 252873 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 252859 Number of HSP's successfully gapped: 14 Length of query: 440 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 301 Effective length of database: 1,751,175,118 Effective search space: 527103710518 Effective search space used: 527103710518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)