BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0010.p (501 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9B0S4.1 A9B0S4_HERA2 TROVE domain protein 358 9e-97 C0EJD6.1 C0EJD6_NEIFL Putative uncharacterized protein 190 3e-46 B9JEQ5.1 B9JEQ5_AGRRK TROVE domain protein 189 5e-46 B3Q1Y4.1 B3Q1Y4_RHIE6 Probable ribonucleoprotein 188 1e-45 A4EPS8.1 A4EPS8_9RHOB TROVE domain protein 185 1e-44 >A9B0S4.1 A9B0S4_HERA2 TROVE domain protein Length = 546 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 204/531 (38%), Positives = 305/531 (57%), Gaps = 35/531 (6%) Query: 3 MSFASKLFSSKKPNAR---NQEGYPAYTRSVEEQYLQMLLTNTMSNTFYADQQELLDNAA 59 M+ +LF+ + P+A N EG+P Y RS+ E+Y+Q LLTNT+ +TFYA Q A Sbjct: 19 MNIVRRLFA-RTPDAAHGLNHEGFPTYQRSLAERYMQTLLTNTIGSTFYASQGSNYALAL 77 Query: 60 ELHEQMALEQPEFMAKALIYARSEGFMRLQPLFGLAVLSGTRPDVFAKVFKKVVQIPSDL 119 ELH+ M P F AKAL+YAR +G MRLQP+ GL VLS +F +FK+++ P DL Sbjct: 78 ELHQAMLAHNPLFAAKALVYAREQGTMRLQPIIGLVVLSTVDLGLFHLIFKRIILTPGDL 137 Query: 120 SDFLTILQGLGRGEG-GRAVKRQVNLFLAGISEYWALKYNGRGRGRGYSLGDAIATAHPK 178 DF+ I++ G GRA+K+ +N +L +SEY +KY G G +L D + P+ Sbjct: 138 QDFVQIVRSRQIRPGMGRAIKQTINDWLLNLSEYHVIKYGGTNAG-SMTLRDVLRLTRPQ 196 Query: 179 PADLKQQALFRYLRGQ--------EANLALLPQVEAMEKLKQAGSAEEQIAWIERGKLPY 230 P D + ALF YL + E LLPQ+ A+E+LK+ EQ A +E G+LPY Sbjct: 197 PIDDRTNALFSYLIDRERWRTTWAEQASTLLPQIAAVEQLKRTSDPTEQRALVEAGRLPY 256 Query: 231 SAVTGAIKPSQEVWNAILYQMPTFALLRHLNTLLRSGVLADQKNLDYVVGRLVDQDALRK 290 VTG KP +W ++ QMP ALLR+L +L R+GV D ++YVVGRL D +ALR+ Sbjct: 257 EIVTGTGKPDLAMWRTLIEQMPYLALLRNLASLQRAGVFHDAAMIEYVVGRLGDLEALRR 316 Query: 291 ARILPFRFAT---AFRQVSEPE--LRDALREAVDLTFDNLPDMGGRTAIFLDISGSMQGE 345 A+ILPFR AF +SE E ++ L + +++ F N+P++ GR + D+SGSM+G Sbjct: 317 AKILPFRLHAAWLAFTPLSEQEKLIQQTLEQMIEMAFVNMPEIPGRVVVAPDVSGSMRGS 376 Query: 346 --------YLEIGSVFALALYKKTQGKSLFWLFDTAVADAKPSRRDSILGQAERIHAR-- 395 Y+++ +FA +LY+ L F+T++ + R ++ ++I A+ Sbjct: 377 INPKSQVRYVDVAGIFAGSLYRSNPTAQLL-PFNTSIVQMETWRETKLMWLTKQITAKLG 435 Query: 396 GGTDTGAPVRKLLEHRTKVDQIIIITDEQQ-----NSGSPFYQQLKLYRKKLNPDVKAFV 450 GGT AP+ L E R VD +I ITD ++ +SG+ F + Y K+NP +AF+ Sbjct: 436 GGTAVSAPISYLYERREVVDVVIAITDNEEWARDSDSGTSFVSVWRKYLAKVNPKAQAFL 495 Query: 451 VDIAPYRHAMVPEQDEQTYYVYGWSDTVLSYIAQSVQGYGSMTERVAAMEL 501 + IAPY HA+ P + +++GW++ V +YIAQS+ GY + + L Sbjct: 496 ITIAPYPHAVAPPDEPNVSFIFGWAEHVPAYIAQSLLGYADQLSTIEQITL 546 >C0EJD6.1 C0EJD6_NEIFL Putative uncharacterized protein Length = 524 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 149/511 (29%), Positives = 249/511 (48%), Gaps = 53/511 (10%) Query: 14 KPNARNQEGYPAYTRSVEEQYLQMLLTNTMSNTFYADQQELLDNAAELHEQMALEQPEFM 73 K + N+ G AYT + ++Q Q+ T ++NTFYAD Q LD +L E + +E F+ Sbjct: 18 KTDTHNEAGGIAYTLTPKQQLAQLAATGCLNNTFYADAQSQLDQVLKLAESLDVE---FI 74 Query: 74 AKALIYARSEGFMRLQPLFGLAVLSGTRPDVFAKVFKKVVQIPSDLSDFLTILQ--GLGR 131 AK +YAR +GFM+ P LAVL+ ++ A+VF +VV L +F I++ +GR Sbjct: 75 AKTAVYARQKGFMKDMPALLLAVLAQKDVNMLARVFDQVVDNGKMLRNFAQIIRSGAVGR 134 Query: 132 GEGGRAVKRQVNLFLAGISEYWALKYNGRGRGRGYSLGDAIATAHPKPADLKQQALFRYL 191 G K+ + +L +E L G SL D + HPKP + + A F +L Sbjct: 135 KSFGNRPKKLMQTWLLTATEKQLLNA---AVGNSPSLADVVKMVHPKPREAWRAAWFAWL 191 Query: 192 RGQEANLALLPQV-EAMEKLKQAGSAEEQIAWIERGKLPYSAVTGAIKPSQEVWNAILYQ 250 G+ + LP + A E KQ S E + +P+ +T A+ + W I Sbjct: 192 IGKPYDREALPPITRAFEDYKQ--SREGALP-----NVPFQMLT-ALDLNSGDWAQIARN 243 Query: 251 MPTFALLRHLNTLLRSGVLADQKNLDYVVGRLVDQDALRKARILPFRFATAFRQVSEP-- 308 + ++LNT LR V A KN+ V +L D+ A+ +AR+LP++ TA++ SE Sbjct: 244 GSWQQVRQNLNTFLRHEVFAKSKNIKMVAEKLRDETAIARARVLPYQLLTAYQATSEQMP 303 Query: 309 -ELRDALREAVDLTFDNLPDMGGRTAIFLDISGSMQG-------------EYLEIGSVFA 354 E+R+AL++A++ N+P + G+ + D+SGSM ++I ++ + Sbjct: 304 FEIREALQDAMETAVQNVPAIQGKVVVCPDVSGSMHSPVTGYRGSVSTKTRCIDIAAIVS 363 Query: 355 LALYKKTQGKSLFWLFDTAVADAKPSRRDSILGQAERIH--ARGGTDTGAPVRKLLEHRT 412 A+ +T ++ F+ + K + RDSI+ AE++ GGT AP+ L R Sbjct: 364 AAML-RTNPQARVIPFEQITVNVKLNPRDSIMTNAEKLANVGGGGTACSAPLVMLNRERA 422 Query: 413 KVDQIIIITD--------EQQNSGSPFYQQLKLYRKKLNPDVKAFVVDIAPYRHAMVPEQ 464 VD ++I++D +Q + + ++ + +++ P+ K +DI PY A + Sbjct: 423 DVDLVVIVSDNESWADDSQQWGATTSLMKEWNILKQRC-PEAKLVCLDIQPYTKAQARNR 481 Query: 465 DEQTYYVYGWSDTVLSYIAQSVQGYGSMTER 495 + + G+SD V S I GS ER Sbjct: 482 -QDILNIGGFSDQVFSLI-------GSFAER 504 >B9JEQ5.1 B9JEQ5_AGRRK TROVE domain protein Length = 518 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 145/516 (28%), Positives = 253/516 (49%), Gaps = 46/516 (8%) Query: 16 NARNQEGYPAYTRSVEEQYLQMLLTNTMSNTFYADQQELLDNAAELHEQMALEQPEFMAK 75 + +N E PAY + E Q +T T + TFYAD E L+ L Q+ +PEF+A+ Sbjct: 19 DTKNHEAAPAYQLTPREALAQYAVTGTFNGTFYADGAEQLEAVNTLALQV---EPEFLAR 75 Query: 76 ALIYARSEGFMRLQPLFGLAVLSGTRPDVFAKVFKKVVQIPSDLSDFLTILQ--GLGRGE 133 +YA +G M+ P+ LA+LS + D FA+ F +VV+ L F+ +++ GR Sbjct: 76 VAVYAAEKGHMKDMPVTLLAMLSSLQSDAFARAFPRVVKSGKMLRGFVQVMRSGATGRKS 135 Query: 134 GGRAVKRQVNLFLAGISEYWALKYNGRGRGRGYSLGDAIATAHPKPADLKQQALFRYLRG 193 G K+ V +L S L+ G SL D I HPKPA +++AL+ + G Sbjct: 136 LGTRPKKVVQAWLERASTEQILRAM---VGNDPSLADVIRMVHPKPATEERKALYAWAIG 192 Query: 194 QEANLALLPQ-VEAMEKLKQAGSAEEQIAWIERGKLPYSAVTGAIKPSQEVWNAILYQMP 252 + + A LP V+A+E ++ + + +P+ +T ++ ++E W I + Sbjct: 193 KPYDYAALPDLVKALEAFRRDQT-------VPVPDVPFQMLT-SLPLTREHWVEIARKGG 244 Query: 253 TFALLRHLNTLLRSGVLADQKNLDYVVGRLVDQDALRKARILPFRFATAFRQVSE--PE- 309 + ++LNT R+GV + + + RL D + +RKA++ P++ A++ V P+ Sbjct: 245 WQMVRQNLNTFARNGVFEVEGFAEALAARLADPEEIRKAKVFPYQLMMAWKMVDGQVPDV 304 Query: 310 LRDALREAVDLTFDNLPDMGGRTAIFLDISGSMQG-------------EYLEIGSVFALA 356 +RDAL++A+D+ N+P + G + D+SGSM +++ + A Sbjct: 305 VRDALQDAMDIAIANVPSLTGNVVLCPDVSGSMGSPVTGYRKGATSSVRCIDVAGLMTAA 364 Query: 357 LYKKTQGKSLFWLFDTAVADAKPSRRDSILGQAERIH--ARGGTDTGAPVRKLLEHRTKV 414 ++ K+ F+ V + +RRDS++ A+++ GGT+ AP++KL + KV Sbjct: 365 FLQRNP-KARVLPFENDVVNVSLNRRDSVMTNADKLAKIGGGGTNCSAPLKKLANEKAKV 423 Query: 415 DQIIIITDEQ-----QNSGSPFYQQLKLYR-KKLNPDVKAFVVDIAPYRHAMVPEQDEQT 468 D ++ I+D + + SG P + R K++NP K +DI P+ P + E Sbjct: 424 DLVVFISDNESWVDARGSGQPTAVMTEWARIKRVNPAAKLVCLDIQPHATTQAPTR-EDV 482 Query: 469 YYVYGWSDTVLSYI---AQSVQGYGSMTERVAAMEL 501 + G+SD V I A + G + + A+EL Sbjct: 483 LNIGGFSDAVYGVITAFAANSNGADGWVKAIEAIEL 518 >B3Q1Y4.1 B3Q1Y4_RHIE6 Probable ribonucleoprotein Length = 518 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 146/516 (28%), Positives = 251/516 (48%), Gaps = 46/516 (8%) Query: 16 NARNQEGYPAYTRSVEEQYLQMLLTNTMSNTFYADQQELLDNAAELHEQMALEQPEFMAK 75 + +N E PAY + E Q +T T + TFYA+ E LD L Q+ +PEF+AK Sbjct: 19 DTKNHEAAPAYRLTPREALAQYAVTGTFNGTFYAEGAEQLDAVKTLALQV---EPEFLAK 75 Query: 76 ALIYARSEGFMRLQPLFGLAVLSGTRPDVFAKVFKKVVQIPSDLSDFLTILQ--GLGRGE 133 +YA +G M+ P+ LA LS + D FA+ F +VV+ L F+ +++ GR Sbjct: 76 VAVYAGEKGHMKDMPVTLLATLSSLQSDAFARAFPRVVKSGKMLRGFVQVMRSGATGRKS 135 Query: 134 GGRAVKRQVNLFLAGISEYWALKYNGRGRGRGYSLGDAIATAHPKPADLKQQALFRYLRG 193 G K+ V +L S L+ G SL D I HPKPA +++AL+ + G Sbjct: 136 LGTRPKKVVQAWLERASTEQILRAM---VGNDPSLADVIRMVHPKPASEERKALYAWAIG 192 Query: 194 QEANLALLPQ-VEAMEKLKQAGSAEEQIAWIERGKLPYSAVTGAIKPSQEVWNAILYQMP 252 + + A LP+ V A+E ++ + + +P+ +T ++ ++E W I + Sbjct: 193 KPHDYAALPELVRALEAFRRDQT-------VPVPDVPFQMLT-SLPLTREHWVEIARKGG 244 Query: 253 TFALLRHLNTLLRSGVLADQKNLDYVVGRLVDQDALRKARILPFRFATAFRQVSE--PE- 309 + ++LNT R+GV A + + + RL D + +RKA++ P++ A++ V P+ Sbjct: 245 WQMVRQNLNTFARNGVFAVEGFAEALAARLADPEEIRKAKVFPYQLMMAWKMVDGQVPDV 304 Query: 310 LRDALREAVDLTFDNLPDMGGRTAIFLDISGSMQG-------------EYLEIGSVFALA 356 +RDAL++A+D+ N+P + G + D+SGSM +++ + A Sbjct: 305 VRDALQDAMDIAIANVPSLTGNVVLCPDVSGSMGSPVTGYRKGATSSVRCIDVAGLMTAA 364 Query: 357 LYKKTQGKSLFWLFDTAVADAKPSRRDSILGQAERIH--ARGGTDTGAPVRKLLEHRTKV 414 ++ K+ F+ V ++RDS++ A ++ GGT+ AP+R L + KV Sbjct: 365 FLQRNP-KARVLPFENDVVRVSLNKRDSVMTNAGKLAKIGGGGTNCSAPLRMLANEKAKV 423 Query: 415 DQIIIITDEQ-----QNSGSPFYQQLKLYR-KKLNPDVKAFVVDIAPYRHAMVPEQDEQT 468 D ++ I+D + + SG P + R K++NP K +DI P+ P + E Sbjct: 424 DLVVFISDNESWVDARGSGQPTAVMAEWARIKRVNPAAKLVCLDIQPHATTQAPTR-EDV 482 Query: 469 YYVYGWSDTVLSYI---AQSVQGYGSMTERVAAMEL 501 + G+SD V I A + +G + + A+EL Sbjct: 483 LNIGGFSDAVYGVITAFAANSKGADGWVKAIEAIEL 518 >A4EPS8.1 A4EPS8_9RHOB TROVE domain protein Length = 518 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 150/506 (29%), Positives = 236/506 (46%), Gaps = 51/506 (10%) Query: 14 KPNARNQEGYPAYTRSVEEQYLQMLLTNTMSNTFYADQQELLDNAAELHEQMALEQPEFM 73 K A+N G PAY S Q+ +T T FY QE L+ ++ E + +P+F+ Sbjct: 17 KATAQNAHGAPAYAYSDAHALAQVAVTGTFGGMFYQSPQEELEYVRDVAEAV---EPKFL 73 Query: 74 AKALIYARSEGFMRLQPLFGLAVLSGTRPDVFAKVFKKVVQIPSDLSDFLTILQG--LGR 131 A+A IYAR G+M+ P LA+L+ P F F +VV L F+ +++ GR Sbjct: 74 AQAAIYARQSGYMKDMPAVLLAILARRDPVRFRAAFGRVVDNGKMLRTFVQVIRSGQTGR 133 Query: 132 GEGGRAVKRQVNLFLAGISEYWALKYNGRGRGRGYSLGDAIATAHPKPADLKQQALFRYL 191 G A K V +L ++ L N G +L D I HPKP +++ALF ++ Sbjct: 134 KSLGSAPKAMVQNWLNTATDRALLNAN---IGNDPTLADVIKMVHPKPVSAEREALFAWI 190 Query: 192 RGQEANLALLPQVEAMEKLKQAGSAEEQIAWIERGK-----LPYSAVTGAIKPSQEVWNA 246 G+ NLA LPQ + ++ IA+ E GK +P+ +T ++ S E W Sbjct: 191 VGRPCNLARLPQ-----------ALQDWIAFRETGKGPLPDVPFQMLT-QLELSPEHWAR 238 Query: 247 ILYQMPTFALLRHLNTLLRSGVLADQKNLDYVVGRLVDQDALRKARILPFRFATAFRQVS 306 I + + ++LNT R GV KN+D+V L D + KAR P++ A + V+ Sbjct: 239 IARKGSWQMVRQNLNTFQRHGVFNVTKNVDHVAALLRDPQTIAKARAFPYQLMVAAQNVT 298 Query: 307 ---EPELRDALREAVDLTFDNLPDMGGRTAIFLDISGSMQG-------------EYLEIG 350 E+ +AL +A+++ N+P + G+ + D+SGSM ++++ Sbjct: 299 GEMPREIVEALHDAMEIAVQNVPKIDGQVVVCPDVSGSMTWAVTGYRPGATSTVRHVDVA 358 Query: 351 SVFALALYKKTQGKSLFWLFDTAVADAKPSRRDSILGQAERIH--ARGGTDTGAPVRKLL 408 ++ A + + +G + FD V D + RD+IL AER+ A GGT+ AP++ L Sbjct: 359 ALVAASFQRVNRGCQVL-PFDFDVRDVRLEPRDTILTNAERLAALAGGGTNCSAPLKWLN 417 Query: 409 EHRTKVDQIIIITDEQQ----NSGSPFYQQLKLYR--KKLNPDVKAFVVDIAPYRHAMVP 462 + D ++ ++D Q G LK + K NP K +DIAPY Sbjct: 418 DRGRAPDLVVFVSDNQSWVDARKGGQGTAMLKEWEAIKYRNPKAKLVCIDIAPYGTTQA- 476 Query: 463 EQDEQTYYVYGWSDTVLSYIAQSVQG 488 + E V G+SD V IA G Sbjct: 477 QTREDVLNVGGFSDAVFDQIAAFANG 502 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,897,914,388 Number of extensions: 123261922 Number of successful extensions: 292144 Number of sequences better than 1.0e-05: 124 Number of HSP's gapped: 291772 Number of HSP's successfully gapped: 125 Length of query: 501 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 361 Effective length of database: 1,741,754,103 Effective search space: 628773231183 Effective search space used: 628773231183 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)