BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0006.p (498 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGE2.1 B3KGE2_9BACI Extracellular solute-binding protein family 1 711 0.0 B1D5E5.1 B1D5E5_9BACL Extracellular solute-binding protein family 1 662 0.0 B3K8I2.1 B3K8I2_9BACI Extracellular solute-binding protein family 1 530 e-148 B1BID8.1 B1BID8_CLOPE Bacterial extracellular solute-binding pro... 462 e-128 B1RLL8.1 B1RLL8_CLOPE Bacterial extracellular solute-binding pro... 462 e-128 >B3KGE2.1 B3KGE2_9BACI Extracellular solute-binding protein family 1 Length = 492 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/496 (70%), Positives = 413/496 (83%), Gaps = 6/496 (1%) Query: 1 MSKKSKRLSLLVTSMMAFSVLLSACGGSNNNAGTNXXXXXXXXXXXXPVELIWYTIGAPQ 60 MSK K+ L +T +++ S+LLSACGG+ + N PVELIWYTIG PQ Sbjct: 1 MSKSKKKWLLPLTLLLSASMLLSACGGNKEESAGNGGGTAEK-----PVELIWYTIGTPQ 55 Query: 61 KDLDTVVAEINKYTKEKINATLKINMIDFGDYSQKMQVKVASGEPMDIMFTSSWALDYVQ 120 KD+D V AEINKYT EKI T+ + MIDFGDY+QKMQV ASGEPMDI+FTSSWA DYVQ Sbjct: 56 KDVDKVEAEINKYTAEKIGVTVDMKMIDFGDYNQKMQVMAASGEPMDILFTSSWAFDYVQ 115 Query: 121 NARKGAFLEIDSLIDQYGKGIKDAIDPAFLEGSKVDGHNYAIPANKELPAQEVWRFNKEL 180 NARKGAF+E+D LI+ +GKGIK+AIDPAFLEGSKVDGHNYAIPANKELPAQE WRFNK L Sbjct: 116 NARKGAFMELDELIESHGKGIKEAIDPAFLEGSKVDGHNYAIPANKELPAQEAWRFNKTL 175 Query: 181 VDKYKLDISSATTLESIEPMLKTIKENEPGITPYAMVKDFMPVMPFDYIIEKMPMAVYLD 240 +DKY LDIS+ ++ES+EP+LKTIKENEP + P A+ KDF P++PFDYIIEKMPMAVYLD Sbjct: 176 LDKYNLDISNVKSMESLEPLLKTIKENEPNVVPLAISKDFGPLLPFDYIIEKMPMAVYLD 235 Query: 241 TKD-YKIVNILETPELKANLETVHKYYKAGYLSSEVATTTSVDDLYKSGKWFMDRASTQP 299 K+ K+VN LE PE L+ ++KYYKAGY+S E ATTTS DL SG WF DRA+TQP Sbjct: 236 DKEELKVVNFLEMPETMDMLKLMNKYYKAGYISPEAATTTSTQDLMTSGNWFTDRAATQP 295 Query: 300 MADNLWSASYGYPVVSSPAGKSYIYNWSVMGSMQAISANSEHPEKAMEFLNLLNTDPVLR 359 ADNLWS SYGYPVVS+PAG + I+NWSVMGSMQAISANS++PEKAMEFLNLLNTD LR Sbjct: 296 FADNLWSQSYGYPVVSTPAGDANIFNWSVMGSMQAISANSKYPEKAMEFLNLLNTDVYLR 355 Query: 360 NMVDSGIEGVHYEKVNDNTVKFLPEAKNYDMPTFSLGNVMITYLNEGDPADKWEQFKKFN 419 N+VDSGIEGVHY+K+++N ++ LPE+KNYDMPTF+LGNVM+TYLN DP +KWE+FKKFN Sbjct: 356 NLVDSGIEGVHYKKLSENVMENLPESKNYDMPTFALGNVMLTYLNPEDPENKWEEFKKFN 415 Query: 420 EAGINAPLLGFNFDTSKVTSEIAAVQNVKEEFWAPLMTGTVDPNEYLPKAIEKFKAAGLD 479 E+G APLLGFNFD +KV++E+AAV NVKEEFWAPLMTGTV+P E+LPKA EK KAAGLD Sbjct: 416 ESGQPAPLLGFNFDPTKVSTELAAVNNVKEEFWAPLMTGTVNPEEFLPKANEKLKAAGLD 475 Query: 480 KIIAEAQTQIDAWKAA 495 KIIAEAQ+QIDAWKA+ Sbjct: 476 KIIAEAQSQIDAWKAS 491 >B1D5E5.1 B1D5E5_9BACL Extracellular solute-binding protein family 1 Length = 499 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/495 (64%), Positives = 387/495 (78%), Gaps = 2/495 (0%) Query: 6 KRLSLLVTSMMAFSVLLSACGGSNNNAGTNXXXXXXXXXX--XXPVELIWYTIGAPQKDL 63 K+ S+ +TS MA +LLSACG + N N PVEL WYTIG PQKD+ Sbjct: 5 KKASIGLTSAMAVMLLLSACGSNGGNTAANNNTSSSGNSGSNAKPVELNWYTIGTPQKDV 64 Query: 64 DTVVAEINKYTKEKINATLKINMIDFGDYSQKMQVKVASGEPMDIMFTSSWALDYVQNAR 123 D V+ +++YTKEKI AT+K+ MID+GDY+QKMQV ASG MDIMFT++WA DYVQNAR Sbjct: 65 DKVMEAVSEYTKEKIGATVKMTMIDWGDYNQKMQVLTASGADMDIMFTAAWAFDYVQNAR 124 Query: 124 KGAFLEIDSLIDQYGKGIKDAIDPAFLEGSKVDGHNYAIPANKELPAQEVWRFNKELVDK 183 KGAF ID L+ QYGKGI D ++PAFL GSKVDG NY +PANKELP EVWRFNK ++D+ Sbjct: 125 KGAFAPIDDLLTQYGKGITDTLNPAFLSGSKVDGKNYGVPANKELPTSEVWRFNKNILDE 184 Query: 184 YKLDISSATTLESIEPMLKTIKENEPGITPYAMVKDFMPVMPFDYIIEKMPMAVYLDTKD 243 KL I+ +LES+EP+LKT+K+N P +TP + K F P +P+DY+IEK P+AV LD Sbjct: 185 NKLSITDVRSLESLEPLLKTVKQNNPDVTPLQVDKTFTPYIPYDYLIEKFPLAVKLDDAS 244 Query: 244 YKIVNILETPELKANLETVHKYYKAGYLSSEVATTTSVDDLYKSGKWFMDRASTQPMADN 303 YKIVN+ ETPE+K LET+HKYY AGY+ +E AT S D+ +GKWF D+A+TQP ADN Sbjct: 245 YKIVNVFETPEMKQALETMHKYYLAGYVPTEAATLESSSDVQATGKWFADKATTQPFADN 304 Query: 304 LWSASYGYPVVSSPAGKSYIYNWSVMGSMQAISANSEHPEKAMEFLNLLNTDPVLRNMVD 363 +WS SYGYP+VS+P + IYN SVMGSMQAISANS+H EKAMEFLNLLNTDPVLRNMVD Sbjct: 305 VWSTSYGYPIVSTPMSDALIYNQSVMGSMQAISANSKHKEKAMEFLNLLNTDPVLRNMVD 364 Query: 364 SGIEGVHYEKVNDNTVKFLPEAKNYDMPTFSLGNVMITYLNEGDPADKWEQFKKFNEAGI 423 SGIEG HY+ + + ++ LPE+KNYDMPTF+LGN+MIT+LN GDPADKWEQFKK+N+AG Sbjct: 365 SGIEGTHYKVTDGDYMENLPESKNYDMPTFALGNIMITHLNPGDPADKWEQFKKYNDAGK 424 Query: 424 NAPLLGFNFDTSKVTSEIAAVQNVKEEFWAPLMTGTVDPNEYLPKAIEKFKAAGLDKIIA 483 A LLGFNFD +KV+SEIAAVQN KE FWAPLMTGTVDP +YLP+AI+K AGL KI+A Sbjct: 425 PAALLGFNFDPTKVSSEIAAVQNAKESFWAPLMTGTVDPEKYLPQAIKKLNDAGLGKIMA 484 Query: 484 EAQTQIDAWKAANNK 498 EAQTQ+DAWKAA K Sbjct: 485 EAQTQLDAWKAAQGK 499 >B3K8I2.1 B3K8I2_9BACI Extracellular solute-binding protein family 1 Length = 507 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/452 (58%), Positives = 339/452 (75%), Gaps = 4/452 (0%) Query: 48 PVELIWYTIGAPQKDLDTVVAEINKYTKEKINATLKINMIDFGDYSQKMQVKVASGEPMD 107 PV+L Y IG QKDL V EINKY EKINAT++I+MID+GDYSQ+MQV +SGE D Sbjct: 56 PVKLKMYMIGPNQKDLPMVQEEINKYLTEKINATIEISMIDWGDYSQRMQVITSSGENYD 115 Query: 108 IMFTSSWALDYVQNARKGAFLEIDSLIDQYGKGIKDAIDPAFLEGSKVDGHNYAIPANKE 167 I FTSSWA DY+ NA KGAF ++ L+DQYGKGIK+ +DP FLEG+KV+G NY IPANKE Sbjct: 116 IAFTSSWAFDYLPNAAKGAFKPLNELLDQYGKGIKEVLDPRFLEGTKVNGVNYGIPANKE 175 Query: 168 LPAQEVWRFNKELVDKYKLDISSATTLESIEPMLKTIKENEPG-ITPYAMVKDFMPVMPF 226 L Q VWRFNK+ +DKY LDIS TTLE +EP+LKTIKENEP ITP A+ K F P MPF Sbjct: 176 LAQQFVWRFNKKYLDKYNLDISKVTTLEDLEPLLKTIKENEPAEITPLAVPKGFKPYMPF 235 Query: 227 DYII-EKMPMAVYLDTKDYKIVNILETPELKANLETVHKYYKAGYLSSEVATTTSVDDLY 285 DY + +++P+ +YLDT+D+K VN+L++PELK+ LET+ KYYKAGY+ ++AT +D++ Sbjct: 236 DYPLGDEIPIGMYLDTEDFKFVNLLDSPELKSALETMRKYYKAGYVREDIATLDGIDNI- 294 Query: 286 KSGKWFMDRASTQPMADNLWSASYGYPVVSSPAGKSYIYNWSVMGSMQAISANSEHPEKA 345 K+GKW +DR TQP A+ WS + GY +V+ P IY S GSM AIS+ S++ E+A Sbjct: 295 KTGKWLVDREITQPYAELGWSRNAGYDIVTRPMHDPVIYTSSAAGSMMAISSYSKNSERA 354 Query: 346 MEFLNLLNTDPVLRNMVDSGIEGVHYEKVNDNTVKFLPEAK-NYDMPTFSLGNVMITYLN 404 M FLNLLNTD LRNM+ G+EG HY+K+ + ++ +P + NY MP F+LGN+ +TYL+ Sbjct: 355 MMFLNLLNTDVKLRNMIQYGLEGTHYKKLEEPYIEDMPAMQENYAMPGFALGNMFLTYLH 414 Query: 405 EGDPADKWEQFKKFNEAGINAPLLGFNFDTSKVTSEIAAVQNVKEEFWAPLMTGTVDPNE 464 EG+P DKWE F+KFN + + AP GFNFDT+ V +E+AA+ NV +EF L TG+VDP E Sbjct: 415 EGEPKDKWEAFEKFNTSAVVAPTFGFNFDTAPVKTEVAAITNVAKEFIPALYTGSVDPEE 474 Query: 465 YLPKAIEKFKAAGLDKIIAEAQTQIDAWKAAN 496 YLPKA +KF+ AG+DK+IAEAQ Q D WKA N Sbjct: 475 YLPKAKQKFQDAGIDKVIAEAQKQFDEWKAQN 506 >B1BID8.1 B1BID8_CLOPE Bacterial extracellular solute-binding protein Length = 482 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 243/499 (48%), Positives = 325/499 (65%), Gaps = 18/499 (3%) Query: 1 MSKKSKRLSLLVTSMMAFSVLLSACGGSNN-NAGTNXXXXXXXXXXXXPVELIWYTIGAP 59 M K K ++L +M+ SV L+ CG NAG V+L WYTIG Sbjct: 1 MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGET-----------VKLTWYTIGQT 49 Query: 60 QKDLDTVVAEINKYTKEKINATLKINMIDFGDYSQKMQVKVASGEPMDIMFTSSWALDYV 119 KDLD V + N+Y KEKINAT+ + ID+GDY+QKM V + SGEP D+ FT SWA Y+ Sbjct: 50 PKDLDMVQEKANEYLKEKINATIDMKFIDYGDYTQKMGVIINSGEPYDLAFTCSWANPYL 109 Query: 120 QNARKGAFLEIDSLIDQYGKGIKDAIDPAFLEGSKVDGHNYAIPANKELPAQEVWRFNKE 179 +NARKGAFLEID L++ GK +K ID F EG+K+DG YA+P KE+ +W F KE Sbjct: 110 ENARKGAFLEIDELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGVAPMWVFTKE 169 Query: 180 LVDKYKLDISSATTLESIEPMLKTIKENEPGITPYAMVKDFMPVMPFDYIIEKMPMAVYL 239 VDKY + TLE +EP LK I ENEP +TP + K F FD +++ P+ V Sbjct: 170 YVDKYNIPYQDIHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVD--PVGVEY 227 Query: 240 DTKDYKIVNILETPELKANLETVHKYYKAGYLSSEVATTTSVDDLYKSGKWFMDRASTQP 299 + KI N+ ET ++K+ LET+ KYY AGY++++ AT + DD K+ K F+ +A QP Sbjct: 228 GDESLKIKNMFETDKMKSELETLQKYYDAGYINADSAT--AKDD--KAVKRFVTKADGQP 283 Query: 300 MADNLWSASYGYPVVSSPAGKSYIYNWSVMGSMQAISANSEHPEKAMEFLNLLNTDPVLR 359 AD LWS GY VVSSP +++I N S GSM AIS SEHPEKAMEFLNLLNTD LR Sbjct: 284 YADGLWSKDLGYEVVSSPIMETHITNGSTTGSMIAISKTSEHPEKAMEFLNLLNTDVYLR 343 Query: 360 NMVDSGIEGVHYEKVNDNTVKFLPEAKNYDMPTFSLGNVMITYLNEGDPADKWEQFKKFN 419 N+++ GIEG HYEK D +K +AK+Y + ++LGN+ ITY + +PADKW++F+ FN Sbjct: 344 NLLNYGIEGTHYEKTGDTQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPADKWKEFEAFN 403 Query: 420 EAGINAPLLGFNFDTSKVTSEIAAVQNVKEEFWAPLMTGTVDPNEYLPKAIEKFKAAGLD 479 +A + +P LGF F+T KV+++IAA+ NV EEF A + +G+V+ EYL K +K K G+D Sbjct: 404 DASVESPALGFKFNTEKVSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGID 463 Query: 480 KIIAEAQTQIDAWKAANNK 498 ++I+E Q+QIDAWKA N K Sbjct: 464 EVISEMQSQIDAWKAENGK 482 >B1RLL8.1 B1RLL8_CLOPE Bacterial extracellular solute-binding protein Length = 482 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 243/499 (48%), Positives = 324/499 (64%), Gaps = 18/499 (3%) Query: 1 MSKKSKRLSLLVTSMMAFSVLLSACGGSNN-NAGTNXXXXXXXXXXXXPVELIWYTIGAP 59 M K K ++L +M+ SV L+ CG NAG V+L WYTIG Sbjct: 1 MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGET-----------VKLTWYTIGQT 49 Query: 60 QKDLDTVVAEINKYTKEKINATLKINMIDFGDYSQKMQVKVASGEPMDIMFTSSWALDYV 119 KDLD V + N+Y KEKINAT+ + ID+GDY+QKM V + SGEP D+ FT SWA Y+ Sbjct: 50 PKDLDMVQEKANEYLKEKINATIDMKFIDYGDYTQKMGVIINSGEPYDLAFTCSWANPYL 109 Query: 120 QNARKGAFLEIDSLIDQYGKGIKDAIDPAFLEGSKVDGHNYAIPANKELPAQEVWRFNKE 179 +NARKGAFLEID L++ GK +K ID F EG+K+DG YA+P KE+ +W F KE Sbjct: 110 ENARKGAFLEIDELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGVAPMWVFTKE 169 Query: 180 LVDKYKLDISSATTLESIEPMLKTIKENEPGITPYAMVKDFMPVMPFDYIIEKMPMAVYL 239 VDKY + TLE +EP LK I ENEP +TP + K F FD +++ P+ V Sbjct: 170 YVDKYNIPYQDIHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVD--PVGVEY 227 Query: 240 DTKDYKIVNILETPELKANLETVHKYYKAGYLSSEVATTTSVDDLYKSGKWFMDRASTQP 299 + KI N+ ET ++K LET+ KYY AGY++++ AT + DD K+ K F+ +A QP Sbjct: 228 GDESLKIKNMFETDKMKGELETLQKYYDAGYINADSAT--AKDD--KAVKRFVTKADGQP 283 Query: 300 MADNLWSASYGYPVVSSPAGKSYIYNWSVMGSMQAISANSEHPEKAMEFLNLLNTDPVLR 359 AD LWS GY VVSSP +++I N S GSM AIS SEHPEKAMEFLNLLNTD LR Sbjct: 284 YADGLWSKDLGYEVVSSPIMETHITNGSTTGSMIAISKTSEHPEKAMEFLNLLNTDVYLR 343 Query: 360 NMVDSGIEGVHYEKVNDNTVKFLPEAKNYDMPTFSLGNVMITYLNEGDPADKWEQFKKFN 419 N+++ GIEG HYEK D +K +AK+Y + ++LGN+ ITY + +PADKW++F+ FN Sbjct: 344 NLLNYGIEGTHYEKTGDTQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPADKWKEFEAFN 403 Query: 420 EAGINAPLLGFNFDTSKVTSEIAAVQNVKEEFWAPLMTGTVDPNEYLPKAIEKFKAAGLD 479 +A + +P LGF F+T KV+++IAA+ NV EEF A + +G+V+ EYL K +K K G+D Sbjct: 404 DASVESPALGFKFNTEKVSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGID 463 Query: 480 KIIAEAQTQIDAWKAANNK 498 ++I+E Q+QIDAWKA N K Sbjct: 464 EVISEMQSQIDAWKAENGK 482 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,929,235,570 Number of extensions: 124574830 Number of successful extensions: 260539 Number of sequences better than 1.0e-05: 206 Number of HSP's gapped: 260010 Number of HSP's successfully gapped: 210 Length of query: 498 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 358 Effective length of database: 1,741,754,103 Effective search space: 623547968874 Effective search space used: 623547968874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)