BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0005.p (308 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGE3.1 B3KGE3_9BACI Binding-protein-dependent transport system... 486 e-135 B1D5E4.1 B1D5E4_9BACL Binding-protein-dependent transport system... 456 e-126 B3K8I4.1 B3K8I4_9BACI Binding-protein-dependent transport system... 412 e-113 Q92A05.1 Q92A05_LISIN Lin2117 protein 387 e-106 Q71Y12.1 Q71Y12_LISMF Putative ABC transporter, permease protein 386 e-105 >B3KGE3.1 B3KGE3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 312 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/307 (76%), Positives = 268/307 (87%) Query: 2 KMIRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGW 61 + +NI+ NK ML MVLPG LWFL FSYLPM GT+IAFKEYR+SRDGFWASI+NS+WVG+ Sbjct: 6 QFFKNIMTNKAMLFMVLPGTLWFLLFSYLPMFGTIIAFKEYRFSRDGFWASIVNSEWVGF 65 Query: 62 DNFKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLP 121 NFKFLF+TNDAY+ITRNT+LYN VFI+LGL+LSVA+AIVL+EI NKKLAKVYQTGMFLP Sbjct: 66 QNFKFLFSTNDAYIITRNTVLYNFVFIILGLILSVALAIVLSEIVNKKLAKVYQTGMFLP 125 Query: 122 YFLSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYN 181 YFLSWV+VGYFAFSFLS + G+LNQIL +FG EP+ WYSE KYWP+ L L+ LWK++GYN Sbjct: 126 YFLSWVIVGYFAFSFLSMDKGMLNQILGWFGMEPVQWYSEAKYWPIFLTLISLWKSVGYN 185 Query: 182 SVVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGL 241 SVVYLAAIMGIDKSLYEAAMIDGA K+QQIK AIGKIFYADFGL Sbjct: 186 SVVYLAAIMGIDKSLYEAAMIDGANKWQQIKAITLPMLKPLMTILTLLAIGKIFYADFGL 245 Query: 242 FYQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 FYQVPR+SGTLYSVTNVIDTYVY+GLK+TGEIGMSTAAGLYQSVVGF+LV+ SNYIVRK+ Sbjct: 246 FYQVPRDSGTLYSVTNVIDTYVYRGLKTTGEIGMSTAAGLYQSVVGFILVMVSNYIVRKY 305 Query: 302 NKDSALF 308 +KD+ALF Sbjct: 306 DKDNALF 312 >B1D5E4.1 B1D5E4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/307 (73%), Positives = 265/307 (86%), Gaps = 1/307 (0%) Query: 2 KMIRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGW 61 + ++I NK +LLMVLP +WFLFFSYLPM+GTVI+FKEYR GF +SII+S+WVG+ Sbjct: 6 RFFKDINRNKALLLMVLPATVWFLFFSYLPMLGTVISFKEYR-VHGGFLSSIIHSRWVGF 64 Query: 62 DNFKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLP 121 DNFKFLF+TNDAYVITRNTLLYN VFI++GLVL+VA+AIVL+EIANK+LAK YQTGMFLP Sbjct: 65 DNFKFLFSTNDAYVITRNTLLYNIVFIIIGLVLAVALAIVLSEIANKRLAKWYQTGMFLP 124 Query: 122 YFLSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYN 181 YFLSWV+VGYFA+SFLS + GV+N+I+S FG +P WYSE KYWP I+V+V+LWK+LGYN Sbjct: 125 YFLSWVIVGYFAYSFLSFDRGVMNKIVSAFGMDPQQWYSEPKYWPFIIVIVFLWKSLGYN 184 Query: 182 SVVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGL 241 SVVYLAAIMGIDKSLYEAAMIDGA K+QQI+N AIG+IFYADFGL Sbjct: 185 SVVYLAAIMGIDKSLYEAAMIDGANKWQQIRNVTLPMLAPLMTILTLLAIGRIFYADFGL 244 Query: 242 FYQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 FYQV R+SGTLY+VTNVIDTYVY+GLK+TGEIGMSTAAGLYQS VGF LVITSN+IVR+F Sbjct: 245 FYQVTRDSGTLYNVTNVIDTYVYRGLKTTGEIGMSTAAGLYQSFVGFALVITSNWIVRRF 304 Query: 302 NKDSALF 308 NKD+ALF Sbjct: 305 NKDNALF 311 >B3K8I4.1 B3K8I4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 309 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/305 (63%), Positives = 247/305 (80%) Query: 4 IRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGWDN 63 I+ +I N+ MLLM+LPG +WFL F+YLPM GTV+AFK++R S DGF+AS+ NS+WVG+ N Sbjct: 5 IKKVIRNRFMLLMILPGTIWFLIFAYLPMFGTVLAFKDFRISPDGFFASVFNSEWVGFKN 64 Query: 64 FKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLPYF 123 F++LFTTNDAY+ITRNT+LYN FI+LGLV++V AI+L+E+ NK+ AKVYQTGMFLP+F Sbjct: 65 FEYLFTTNDAYIITRNTILYNLAFIILGLVIAVGFAIMLSELVNKRTAKVYQTGMFLPHF 124 Query: 124 LSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYNSV 183 LSWV++ YFAF+FLS + G LNQI++YFG EPI+WYSE KYWP I++ V +WK +GYNSV Sbjct: 125 LSWVIISYFAFTFLSVDKGTLNQIITYFGGEPISWYSEAKYWPFIIIFVGIWKGVGYNSV 184 Query: 184 VYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGLFY 243 +YLAAI GIDKS YEAA+IDGA K++Q++ AIG IF +DFGLFY Sbjct: 185 IYLAAITGIDKSYYEAAVIDGASKWKQVRYITIPLLKPLMIILTILAIGGIFRSDFGLFY 244 Query: 244 QVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKFNK 303 Q+P++SG LY VTNVIDT+VY+GL + G+IGMSTAAGLYQS VG VL++ +NYIVRK K Sbjct: 245 QLPKDSGALYPVTNVIDTFVYRGLINMGDIGMSTAAGLYQSFVGLVLILVANYIVRKIEK 304 Query: 304 DSALF 308 D A+F Sbjct: 305 DHAIF 309 >Q92A05.1 Q92A05_LISIN Lin2117 protein Length = 309 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/307 (60%), Positives = 237/307 (77%) Query: 2 KMIRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGW 61 K++ I N++ LLMVLPG LWFL FSYLPM GTVIAFK+Y+ GF +SI+NS WVG Sbjct: 3 KVLSQIRANRIWLLMVLPGLLWFLVFSYLPMFGTVIAFKDYKIDGKGFLSSIMNSDWVGL 62 Query: 62 DNFKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLP 121 +NFKFLF TNDA++ITRNT+LYN VFI++GL L VA+AIV + NK+ AK+YQTGM P Sbjct: 63 ENFKFLFQTNDAFIITRNTVLYNLVFIIVGLFLGVALAIVFNSLLNKRGAKIYQTGMLFP 122 Query: 122 YFLSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYN 181 +FLSWVVV YF FSFLS +SG++N IL FG +P++WY++ KYWP IL+++ +WK LGY Sbjct: 123 HFLSWVVVSYFLFSFLSEDSGLMNNILLAFGQDPVSWYNDPKYWPFILIMMNVWKGLGYG 182 Query: 182 SVVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGL 241 S+VYLAAI GID++ YEAAMIDGAGK+QQI++ +GKIF +DFGL Sbjct: 183 SIVYLAAIAGIDRTYYEAAMIDGAGKWQQIRHVTIPALTPLMVILTILNVGKIFNSDFGL 242 Query: 242 FYQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 FYQ+PRNSG LY VT+VIDTYVY+GL S G++ MS AAG YQS+VGF+LV+ +NYIV+K Sbjct: 243 FYQLPRNSGPLYPVTDVIDTYVYRGLTSLGDMSMSAAAGFYQSIVGFILVLLTNYIVKKI 302 Query: 302 NKDSALF 308 N + LF Sbjct: 303 NPEYGLF 309 >Q71Y12.1 Q71Y12_LISMF Putative ABC transporter, permease protein Length = 312 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/307 (60%), Positives = 237/307 (77%) Query: 2 KMIRNIINNKVMLLMVLPGALWFLFFSYLPMVGTVIAFKEYRYSRDGFWASIINSKWVGW 61 K++ I N++ LLMVLPG LWFL FSYLPM GTVIAFK+Y+ GF +SI++S WVG Sbjct: 6 KVLSQIRANRIWLLMVLPGVLWFLVFSYLPMFGTVIAFKDYKIDGKGFLSSIMSSDWVGL 65 Query: 62 DNFKFLFTTNDAYVITRNTLLYNAVFILLGLVLSVAMAIVLAEIANKKLAKVYQTGMFLP 121 +NFKFLF TNDA++ITRNT+LYN VFI++GL L VA+AI+ + NK+ AK+YQTGM P Sbjct: 66 ENFKFLFQTNDAFIITRNTVLYNLVFIIVGLFLGVALAIIFNSLLNKRGAKIYQTGMLFP 125 Query: 122 YFLSWVVVGYFAFSFLSSESGVLNQILSYFGAEPINWYSEKKYWPVILVLVYLWKALGYN 181 +FLSWVVV YF FSFLS +SG++N IL FG +PI+WY++ KYWP IL+++ +WK LGY Sbjct: 126 HFLSWVVVSYFLFSFLSEDSGLMNNILLAFGQDPISWYNDPKYWPFILIMMNVWKGLGYG 185 Query: 182 SVVYLAAIMGIDKSLYEAAMIDGAGKFQQIKNXXXXXXXXXXXXXXXXAIGKIFYADFGL 241 S+VYLAAI GID++ YEAAMIDGAGK+QQI++ +GKIF +DFGL Sbjct: 186 SIVYLAAIAGIDRTYYEAAMIDGAGKWQQIRHVTIPALTPLMVILTILNVGKIFNSDFGL 245 Query: 242 FYQVPRNSGTLYSVTNVIDTYVYQGLKSTGEIGMSTAAGLYQSVVGFVLVITSNYIVRKF 301 FYQ+PRNSG LY VT+VIDTYVY+GL S G++ MS AAG YQS+VGF+LV+ +NYIV+K Sbjct: 246 FYQLPRNSGPLYPVTDVIDTYVYRGLTSLGDMSMSAAAGFYQSIVGFILVLLTNYIVKKI 305 Query: 302 NKDSALF 308 N + LF Sbjct: 306 NPEYGLF 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,693,222,462 Number of extensions: 68047720 Number of successful extensions: 239000 Number of sequences better than 1.0e-05: 4462 Number of HSP's gapped: 235201 Number of HSP's successfully gapped: 4463 Length of query: 308 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 173 Effective length of database: 1,788,859,178 Effective search space: 309472637794 Effective search space used: 309472637794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)