BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0004.p (308 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGE4.1 B3KGE4_9BACI Binding-protein-dependent transport system... 417 e-115 B1D5E3.1 B1D5E3_9BACL Binding-protein-dependent transport system... 382 e-104 Q9KEQ4.1 Q9KEQ4_BACHD Sugar transport system (Permease) (Binding... 309 2e-82 B1RE56.1 B1RE56_CLOPE ABC transporter, permease protein 307 1e-81 Q8XIN4.1 Q8XIN4_CLOPE Probable ABC transporter 306 1e-81 >B3KGE4.1 B3KGE4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/300 (68%), Positives = 225/300 (75%) Query: 9 KKERDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSL 68 K +DFH+LS WNV+FNL AGIF+FLC SFTDEG+LAR+GY ++P KWSL Sbjct: 6 SKMKDFHQLSSGWNVVFNLIAGIFSFLCVFPFLFVMIISFTDEGSLARNGYQIWPEKWSL 65 Query: 69 AAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXXT 128 AY+YVF++GD LLRSY YAYAISRK FRYRN T Sbjct: 66 EAYKYVFQTGDTLLRSYGVTIFVTVVGTLLSLFIISLYAYAISRKGFRYRNFFSFFAFFT 125 Query: 129 MLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKID 188 MLFNGGLVPTYI+ TQ LGLKD+IWAL++PLA+NAFYIMILRTFYSTSVPDA+IESGKID Sbjct: 126 MLFNGGLVPTYIVATQLLGLKDSIWALILPLALNAFYIMILRTFYSTSVPDAIIESGKID 185 Query: 189 GAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETS 248 GA EF+IF ATI LFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETS Sbjct: 186 GASEFKIFYKLVLPLSLPGLATIGLFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETS 245 Query: 249 MQFIMQXXXXXXXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 MQFI+Q AL+SMPQDTSRMAMVVLATGPII AYPFFQRYFIQGLT+GAVKE Sbjct: 246 MQFILQNSQNSSLSMAALQSMPQDTSRMAMVVLATGPIILAYPFFQRYFIQGLTIGAVKE 305 >B1D5E3.1 B1D5E3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 304 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/301 (61%), Positives = 216/301 (71%) Query: 8 VKKERDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWS 67 ++K +DFH+L+ WNV+FNL AG+FA C SFTDE TLA DGYSLFP KWS Sbjct: 4 LRKTKDFHRLTPAWNVIFNLIAGLFALACVFPFLLVMVISFTDEKTLALDGYSLFPKKWS 63 Query: 68 LAAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXX 127 AY Y+F++GD LLRSY +AYAISRK F+YR Sbjct: 64 TDAYSYLFKAGDQLLRSYGVTILVTVVGTVISLIFISLFAYAISRKGFKYRKFFSFLAFF 123 Query: 128 TMLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKI 187 TMLFNGGLVPTYI+ T+ LGL +++WAL++PLAVNAFYIMI+RTF+ST +PDA+IESGKI Sbjct: 124 TMLFNGGLVPTYIVTTKLLGLGNSLWALILPLAVNAFYIMIMRTFFSTMIPDAIIESGKI 183 Query: 188 DGAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIET 247 DGAGEF IF ATIALF+ LGYWNDWFNALLYI++P+LVPLQSMLMRIE Sbjct: 184 DGAGEFGIFFRLIVPLALPGLATIALFNVLGYWNDWFNALLYIENPDLVPLQSMLMRIEN 243 Query: 248 SMQFIMQXXXXXXXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVK 307 SMQFI+ L+SMPQDTSRMAMVVLATGPI+ AYPFFQRYF+QGLTVGAVK Sbjct: 244 SMQFILANSNNASLGTSVLQSMPQDTSRMAMVVLATGPIVLAYPFFQRYFVQGLTVGAVK 303 Query: 308 E 308 E Sbjct: 304 E 304 >Q9KEQ4.1 Q9KEQ4_BACHD Sugar transport system (Permease) (Binding protein dependent transporter) Length = 322 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 151/300 (50%), Positives = 196/300 (65%) Query: 9 KKERDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWSL 68 KK + + S + N+ + G FAFLC S T E +LA +GY + P++WS Sbjct: 23 KKTYNPYGFSGSTNIFMHTLIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSF 82 Query: 69 AAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXXT 128 AYRY+++ + R+Y YAYAISRK F YR T Sbjct: 83 DAYRYLWQMRSEVFRAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFT 142 Query: 129 MLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKID 188 MLF+GG+VP YI++TQFLGLK+++WAL++P+AVNAFYI+I+RTF+ SVP+A++ES +ID Sbjct: 143 MLFSGGMVPFYIVMTQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARID 202 Query: 189 GAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIETS 248 GAGEFRIF ATIALFSTL YWNDWFNALL+IDDP LVPLQS+LMRIE + Sbjct: 203 GAGEFRIFFKIVLPLSIPGIATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENN 262 Query: 249 MQFIMQXXXXXXXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAVKE 308 + FI Q L S+PQD++RMAMVV+AT PI +YPFFQ+YF++GLT+G VKE Sbjct: 263 LDFIRQNAMLSSQNSALLDSIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVKE 322 >B1RE56.1 B1RE56_CLOPE ABC transporter, permease protein Length = 318 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/302 (50%), Positives = 198/302 (65%), Gaps = 2/302 (0%) Query: 9 KKE-RDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWS 67 K+E F+ +SK N L N+ I AFL S T+E +L +GY P +WS Sbjct: 17 KEEVNKFNSVSKKSNFLLNVLFAILAFLAIMPFVFVIAISLTNEQSLQLNGYRFIPEEWS 76 Query: 68 LAAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXX 127 L AY+Y+F SG +L SY Y YA+SRKSF YR Sbjct: 77 LEAYKYIFSSGSQILTSYGVTITVTIVGTLIGLAIMSMYGYALSRKSFAYRKFFTKVIFV 136 Query: 128 TMLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKI 187 MLF+GG+V +Y++VT+FLGLK+TIWAL++P+ V++F+I+ILRTF+ TSVPDA+IES KI Sbjct: 137 PMLFSGGMVASYLVVTRFLGLKNTIWALILPMCVSSFHIIILRTFFKTSVPDAIIESAKI 196 Query: 188 DGAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIET 247 DGA E+R+F ATI LF TLGYWNDWFNA+LYID+PNL+PLQ +L+R+E Sbjct: 197 DGASEWRLFLRIVLPISLPGIATIGLFLTLGYWNDWFNAMLYIDEPNLIPLQYLLIRLEN 256 Query: 248 SMQFIMQXXXXX-XXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAV 306 SM+F+ EA +SMP+DT++MA+VV++T PIIFAYPFFQRYF+ GLT+GAV Sbjct: 257 SMEFLANNATSLGANAIEATKSMPKDTAKMAIVVISTLPIIFAYPFFQRYFVNGLTIGAV 316 Query: 307 KE 308 KE Sbjct: 317 KE 318 >Q8XIN4.1 Q8XIN4_CLOPE Probable ABC transporter Length = 318 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/302 (50%), Positives = 198/302 (65%), Gaps = 2/302 (0%) Query: 9 KKE-RDFHKLSKTWNVLFNLFAGIFAFLCXXXXXXXXXXSFTDEGTLARDGYSLFPAKWS 67 K+E F+ +SK N L N+ I AFL S T+E +L +GY P +WS Sbjct: 17 KEEVNKFNAVSKKSNFLLNVLFAILAFLAIMPFVFVIAISLTNEQSLQLNGYRFIPEEWS 76 Query: 68 LAAYRYVFESGDMLLRSYXXXXXXXXXXXXXXXXXXXXYAYAISRKSFRYRNXXXXXXXX 127 L AY+Y+F SG +L SY Y YA+SRKSF YR Sbjct: 77 LEAYKYIFSSGSQILTSYGVTITVTIVGTLIGLAIMSMYGYALSRKSFAYRKFFTKVIFV 136 Query: 128 TMLFNGGLVPTYIIVTQFLGLKDTIWALVMPLAVNAFYIMILRTFYSTSVPDALIESGKI 187 MLF+GG+V +Y++VT+FLGLK+TIWAL++P+ V++F+I+ILRTF+ TSVPDA+IES KI Sbjct: 137 PMLFSGGMVASYLVVTRFLGLKNTIWALILPMCVSSFHIIILRTFFKTSVPDAIIESAKI 196 Query: 188 DGAGEFRIFXXXXXXXXXXXXATIALFSTLGYWNDWFNALLYIDDPNLVPLQSMLMRIET 247 DGA E+R+F ATI LF TLGYWNDWFNA+LYID+PNL+PLQ +L+R+E Sbjct: 197 DGASEWRLFLRIVLPISLPGIATIGLFLTLGYWNDWFNAMLYIDEPNLIPLQYLLIRLEN 256 Query: 248 SMQFIMQXXXXX-XXXXEALRSMPQDTSRMAMVVLATGPIIFAYPFFQRYFIQGLTVGAV 306 SM+F+ EA +SMP+DT++MA+VV++T PIIFAYPFFQRYF+ GLT+GAV Sbjct: 257 SMEFLANNATSLGANAIEATKSMPKDTAKMAIVVISTLPIIFAYPFFQRYFVNGLTIGAV 316 Query: 307 KE 308 KE Sbjct: 317 KE 318 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,354,130,822 Number of extensions: 40647574 Number of successful extensions: 110078 Number of sequences better than 1.0e-05: 2188 Number of HSP's gapped: 108648 Number of HSP's successfully gapped: 2189 Length of query: 308 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 173 Effective length of database: 1,788,859,178 Effective search space: 309472637794 Effective search space used: 309472637794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)