BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0001.p (138 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K641.1 B3K641_9BACI Binding-protein-dependent transport system... 236 4e-61 B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport system... 192 7e-48 B1D781.1 B1D781_9BACL Binding-protein-dependent transport system... 184 1e-45 C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane prot... 173 4e-42 C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport system... 168 1e-40 >B3K641.1 B3K641_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 236 bits (603), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/129 (88%), Positives = 122/129 (94%) Query: 10 AGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASW 69 GGAFNIFLLRQFYLSIPRDLDEAAYVDGA H RIF SII+PLT+PAL+VVGLF+FL +W Sbjct: 149 GGGAFNIFLLRQFYLSIPRDLDEAAYVDGAGHLRIFRSIILPLTKPALIVVGLFSFLTAW 208 Query: 70 NDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIE 129 NDFLGPLVYLN E+KYTLALGLQQFKGMY+AEWHLMMAAATVVL PAI+VFFIGQRYFIE Sbjct: 209 NDFLGPLVYLNDETKYTLALGLQQFKGMYSAEWHLMMAAATVVLLPAIIVFFIGQRYFIE 268 Query: 130 GITLTGIKA 138 GITLTGIKA Sbjct: 269 GITLTGIKA 277 >B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 88/129 (68%), Positives = 111/129 (86%) Query: 10 AGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASW 69 GGAFN+FLLRQF+++IP++LDEAA VDGA ++RI+ I++PL PALVVVGLF+FL W Sbjct: 149 GGGAFNVFLLRQFFMTIPKELDEAALVDGAGYFRIYSRIMLPLLVPALVVVGLFSFLNGW 208 Query: 70 NDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIE 129 NDF+GPL+YL+ E YTLALGLQ FKGMY A+WHLMMAA TVVL PA++VFF+GQ+YF+E Sbjct: 209 NDFMGPLIYLSDEKLYTLALGLQTFKGMYNAQWHLMMAATTVVLLPAMLVFFLGQKYFVE 268 Query: 130 GITLTGIKA 138 GI +TG+K Sbjct: 269 GIVMTGLKG 277 >B1D781.1 B1D781_9BACL Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 83/129 (64%), Positives = 111/129 (86%) Query: 10 AGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASW 69 GG FNIFLLRQFY+SIP+D DEAA VDGA++++I+ I++PL+R A++VV LFTFLASW Sbjct: 148 GGGMFNIFLLRQFYMSIPQDFDEAALVDGANYFQIYWRILLPLSRSAVIVVALFTFLASW 207 Query: 70 NDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIE 129 NDF+GPL+YL S+S++TLALGLQ F+G Y A+W L+MAA+T V+ P ++VF +GQR+F+E Sbjct: 208 NDFMGPLIYLKSDSRFTLALGLQMFQGSYNAQWDLLMAASTAVVLPCVLVFLVGQRFFLE 267 Query: 130 GITLTGIKA 138 GITLTG+K Sbjct: 268 GITLTGLKG 276 >C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 301 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 79/132 (59%), Positives = 104/132 (78%) Query: 6 KNGCAGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTF 65 N GG FNIFLLRQF+ +IP +L EAA +DGAS +RI+ II+PL RPAL VV +FTF Sbjct: 169 PNWFGGGIFNIFLLRQFFRTIPVELSEAARIDGASEFRIYWQIILPLARPALTVVAIFTF 228 Query: 66 LASWNDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQR 125 L +WNDF+GPL+YL+S KYT+ALGL FKG+Y+ +W +MAA+TV++ P I +FF+ QR Sbjct: 229 LNNWNDFIGPLIYLSSPEKYTVALGLATFKGLYSTQWQYLMAASTVMILPVIALFFLAQR 288 Query: 126 YFIEGITLTGIK 137 YF++GI LTG+K Sbjct: 289 YFVQGIVLTGLK 300 >C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 76/124 (61%), Positives = 103/124 (83%) Query: 14 FNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASWNDFL 73 FNIFLLRQF+LS+P +LDE+AY+DGA+ ++++ I++PL++PAL+VVG+FTFL WND+L Sbjct: 176 FNIFLLRQFFLSLPYELDESAYIDGANPFQVYWRIVLPLSKPALMVVGIFTFLGVWNDYL 235 Query: 74 GPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIEGITL 133 GPL+YLN YTLA+GL F+G Y A+W +MAAATVVL P I++F I Q+YF+EGI L Sbjct: 236 GPLIYLNDSDMYTLAMGLASFQGTYTAQWGYLMAAATVVLLPIILLFAIAQKYFVEGIAL 295 Query: 134 TGIK 137 TG+K Sbjct: 296 TGLK 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 827,508,448 Number of extensions: 31949576 Number of successful extensions: 113947 Number of sequences better than 1.0e-05: 5728 Number of HSP's gapped: 111264 Number of HSP's successfully gapped: 5728 Length of query: 138 Length of database: 3,060,696,203 Length adjustment: 102 Effective length of query: 36 Effective length of database: 2,099,752,673 Effective search space: 75591096228 Effective search space used: 75591096228 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)