BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0074.0006.p (280 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q24RR6.1 Q24RR6_DESHY Putative uncharacterized protein 223 1e-56 B8FR56.1 B8FR56_DESHD Putative uncharacterized protein 223 1e-56 B8FTH9.1 B8FTH9_DESHD Putative uncharacterized protein 207 6e-52 A6M1J9.1 A6M1J9_CLOB8 Putative uncharacterized protein 206 1e-51 C3HSY5.1 C3HSY5_BACTU Putative uncharacterized protein 204 1e-50 >Q24RR6.1 Q24RR6_DESHY Putative uncharacterized protein Length = 308 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/298 (42%), Positives = 177/298 (59%), Gaps = 25/298 (8%) Query: 7 DLLDPRVDFVFKRIFGSENNKDVLLAFLNRIFTEAGEPPLTEIILMNPYTNKEDPLDKQS 66 + + ++D+ FK IFG E N+ +L+AFLN E + I +MNP NKE DK+S Sbjct: 10 EFISLKIDYAFKLIFGKEGNEAILIAFLNAALKLPQERRIEAITIMNPELNKEYQGDKKS 69 Query: 67 IFDVYAKTSEGKLIDIEMQLFNKYDIEKRTLFYWSKRYASQLSEGDKYPELKKCVTINIL 126 I DV A+TSEG I+IE+QL N+YD+EKR+L+YW++ Y+ Q+ EG Y EL K VTINIL Sbjct: 70 ILDVRAETSEGMQINIEIQLSNQYDMEKRSLYYWAEMYSRQIREGMAYKELAKAVTINIL 129 Query: 127 NYSFLKN-NQYHNVFHLREDRTGLPLIDDIEVHFLELPKL-----DERSVPTEGGLINWL 180 ++++LK + YHNVFHL ED L D +E+HF+ELPKL + P E L+ WL Sbjct: 130 DFNYLKQTSNYHNVFHLYEDEEKFQLTDALEMHFMELPKLLAKWRNREISPWENELVRWL 189 Query: 181 LFLKGTDT----SYWEVLKMNEPGLEKAMDTLQYLSQDSDARRLYEARQKYLHDEASMIE 236 L L+G D E + M +P L +AM + S D R Y R+K + DE + I Sbjct: 190 LLLEGADNQEILQTLEEIAMKDPVLHQAMTAWEETSDDPRIREAYFDRRKAVLDEKAAIR 249 Query: 237 GAK---------------SAGIIEGKLQVARNLLAMGMDYAAVAKATGLSEDEIRSIK 279 A+ +AG EGK +VA+ LL +G + VA+ATGLSE +IRS+K Sbjct: 250 EAELRLKEALEKGRAAGIAAGKAEGKAEVAKKLLDLGFEITKVAEATGLSEKDIRSLK 307 >B8FR56.1 B8FR56_DESHD Putative uncharacterized protein Length = 308 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/298 (42%), Positives = 177/298 (59%), Gaps = 25/298 (8%) Query: 7 DLLDPRVDFVFKRIFGSENNKDVLLAFLNRIFTEAGEPPLTEIILMNPYTNKEDPLDKQS 66 + + ++D+ FK IFG E N+ +L+AFLN E + I +MNP NKE DK+S Sbjct: 10 EFISLKIDYAFKLIFGKEGNEAILIAFLNAALKLPQERRIEAITIMNPELNKEYQGDKKS 69 Query: 67 IFDVYAKTSEGKLIDIEMQLFNKYDIEKRTLFYWSKRYASQLSEGDKYPELKKCVTINIL 126 I DV A+TSEG I+IE+QL N+YD+EKR+L+YW++ Y+ Q+ EG Y EL K VTINIL Sbjct: 70 ILDVRAETSEGMQINIEIQLSNQYDMEKRSLYYWAEMYSRQIREGMAYKELAKAVTINIL 129 Query: 127 NYSFLKN-NQYHNVFHLREDRTGLPLIDDIEVHFLELPKL-----DERSVPTEGGLINWL 180 ++++LK + YHNVFHL ED L D +E+HF+ELPKL + P E L+ WL Sbjct: 130 DFNYLKQTSNYHNVFHLYEDEEKFQLTDALEMHFMELPKLLAKWRNREISPWENELVRWL 189 Query: 181 LFLKGTDT----SYWEVLKMNEPGLEKAMDTLQYLSQDSDARRLYEARQKYLHDEASMIE 236 L L+G D E + M +P L +AM + S D R Y R+K + DE + I Sbjct: 190 LLLEGADNQEILQTLEEIAMKDPVLHQAMTAWEETSDDPRIREAYFDRRKAVLDEKAAIR 249 Query: 237 GAK---------------SAGIIEGKLQVARNLLAMGMDYAAVAKATGLSEDEIRSIK 279 A+ +AG EGK +VA+ LL +G + VA+ATGLSE +IRS+K Sbjct: 250 EAELRLKEALEKGRAAGIAAGKAEGKAEVAKKLLDLGFEITKVAEATGLSEKDIRSLK 307 >B8FTH9.1 B8FTH9_DESHD Putative uncharacterized protein Length = 325 Score = 207 bits (528), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 122/322 (37%), Positives = 179/322 (55%), Gaps = 49/322 (15%) Query: 7 DLLDPRVDFVFKRIFGSENNKDVLLAFLNRIFTEAGEPPLTEIILMNPYTNKEDPLDKQS 66 + + ++D+ FK IFG E N+ +L+AFLN E + EI ++NP NKE P DK+S Sbjct: 3 EFISLKIDYAFKLIFGKEGNEAILIAFLNAALKLPQERRIEEITIINPELNKEYPEDKKS 62 Query: 67 IFDVYAKTSEGKLIDIEMQLFNKYDIEKRTLFYWSKRYASQLSEGDKYPELKKCVTINIL 126 I DV A TS+G I+IE+QL N+YD+EKR+L+YW++ Y+ Q+ EG Y EL K V+INI+ Sbjct: 63 ILDVRAITSQGMQINIEIQLSNQYDMEKRSLYYWAQMYSRQIREGMAYKELTKTVSINIV 122 Query: 127 NYSFLKN-NQYHNVFHLREDRTGLPLIDDIEVHFLELPKL----DERSVPT-EGGLINWL 180 ++++LK + YHNVFHL ED L D +E+HF+ELPKL +R + E L+ WL Sbjct: 123 DFNYLKQTSSYHNVFHLYEDEEKFQLTDVLEIHFMELPKLLAKWRKREISLWENELVRWL 182 Query: 181 LFLKGTDT----SYWEVLKMNEPGLEKAMDTLQYLSQDSDARRLYEARQKYLHDEASMIE 236 L L+G D E + M +P L +AM+ + S+D R Y R+K + DE + I Sbjct: 183 LLLEGADNQEILQILEEIAMKDPVLYQAMNAWEETSEDPRIREAYFDRRKAILDEKAAIR 242 Query: 237 GA---------------------------------------KSAGIIEGKLQVARNLLAM 257 A ++ G EG+ +VA+ LL + Sbjct: 243 EAELRLQEALEEGMAKGIAEGRAKGIAEGKAEGKAEGRAEGRAEGRAEGRAEVAKKLLVL 302 Query: 258 GMDYAAVAKATGLSEDEIRSIK 279 G + +A+ATGLSE+EI +K Sbjct: 303 GFEITKIAEATGLSEEEISGLK 324 >A6M1J9.1 A6M1J9_CLOB8 Putative uncharacterized protein Length = 278 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 113/274 (41%), Positives = 174/274 (63%), Gaps = 3/274 (1%) Query: 8 LLDPRVDFVFKRIFGSENNKDVLLAFLNRIFTEAGEPPLTEIILMNPYTNKEDPLDKQSI 67 ++ P+ DFVFK +FG E NKD+++ LN I + L +I L+N +E D++ I Sbjct: 2 IISPKNDFVFKLLFGDEKNKDLIIELLNSIL-KMPHDELEDIELINTELLREFAEDRKGI 60 Query: 68 FDVYAKTSEGKLIDIEMQLFNKYDIEKRTLFYWSKRYASQLSEGDKYPELKKCVTINILN 127 DV AKT G+ IDIE+Q+ Y + +RTLFYWSK Y Q+ G Y +LKKC+TINI++ Sbjct: 61 LDVRAKTKSGEHIDIEIQVLYTYYMAERTLFYWSKMYNGQIKSGYTYDKLKKCITINIVD 120 Query: 128 YSFLKNNQYHNVFHLREDRTGLPLIDDIEVHFLELPKLDERSVPTEGG--LINWLLFLKG 185 ++ ++ N+ H FH+ ED T L D +E+H+LELPKL + ++P + L+ W++FL+ Sbjct: 121 FNCIEINKLHTSFHITEDETNKKLTDVLEIHYLELPKLFDNNIPKDESEPLVQWMMFLQS 180 Query: 186 TDTSYWEVLKMNEPGLEKAMDTLQYLSQDSDARRLYEARQKYLHDEASMIEGAKSAGIIE 245 + +E+L ++KA + L+ +S+D +AR YEAR+ LHD+ + ++ A+ GI E Sbjct: 181 RNKEAFEMLAEKNEKIKKAYNILEVISKDDNARAAYEAREAELHDQMTRLKSAREEGIKE 240 Query: 246 GKLQVARNLLAMGMDYAAVAKATGLSEDEIRSIK 279 ++ A+N L MG+D VAK TGLS DE+ IK Sbjct: 241 ATIKNAKNFLVMGLDVEMVAKGTGLSVDEVLKIK 274 >C3HSY5.1 C3HSY5_BACTU Putative uncharacterized protein Length = 286 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/281 (39%), Positives = 171/281 (60%), Gaps = 11/281 (3%) Query: 9 LDPRVDFVFKRIFGSENNKDVLLAFLNRIFTEAGEPPLTEIILMNPYTNKEDPLDKQSIF 68 ++ R+DF FK++FG+ N+D+L+AFLN + E+ E P+ + L +P+ ++E DK SI Sbjct: 1 MNLRIDFAFKQLFGTSGNEDILIAFLNALLQESLESPIASLQLEDPHLHREHEEDKLSIL 60 Query: 69 DVYAKTSEGKLIDIEMQLFNKYDIEKRTLFYWSKRYASQLSEGDKYPELKKCVTINILNY 128 D+ A G +++E+QL N +D+ KR+L+YW + Y SQL +G Y L K +TIN+LN+ Sbjct: 61 DISATLDTGTKVNVEIQLNNNHDMIKRSLYYWGRLYTSQLQKGMPYSSLHKTITINLLNF 120 Query: 129 S-FLKNNQYHNVFHLREDRTGLPLIDDIEVHFLELPKL-----DERSVPTEGGLINWLLF 182 F +N +H L + L +DIE+H +E+PKL +E+ P E + WLL Sbjct: 121 VMFPENEVFHTTGILWNQQQQKVLSEDIEIHIVEIPKLMQQWRNEQINPWEDSFVRWLLL 180 Query: 183 LKGTD----TSYWEVLKMNE-PGLEKAMDTLQYLSQDSDARRLYEARQKYLHDEASMIEG 237 L + T E + MN+ P L+KAMD + +SQDS R+ YEAR+K L DEA+ Sbjct: 181 LPANEDERLTQTLEEIAMNQDPILQKAMDKWERMSQDSSFRQAYEAREKALMDEAAKFAH 240 Query: 238 AKSAGIIEGKLQVARNLLAMGMDYAAVAKATGLSEDEIRSI 278 A++ GI EGK+Q+ + + +G+ +AKA+ LS DE+ I Sbjct: 241 ARNEGIQEGKIQMIKGMHELGVPLETIAKASKLSVDEVERI 281 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,657,232,482 Number of extensions: 70846405 Number of successful extensions: 183287 Number of sequences better than 1.0e-05: 588 Number of HSP's gapped: 182346 Number of HSP's successfully gapped: 589 Length of query: 280 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 146 Effective length of database: 1,798,280,193 Effective search space: 262548908178 Effective search space used: 262548908178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)