BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0074.0003.p (247 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GBA4.1 A7GBA4_CLOBL Transcriptional regulator, MerR family 215 2e-54 A5KJ84.1 A5KJ84_9FIRM Putative uncharacterized protein 211 6e-53 C1FTY0.1 C1FTY0_CLOBJ Transcriptional regulator, MerR family 210 1e-52 C1I736.1 C1I736_9CLOT Transcriptional regulator 209 1e-52 C1FTZ5.1 C1FTZ5_CLOBJ Transcriptional regulator, MerR family 209 2e-52 >A7GBA4.1 A7GBA4_CLOBL Transcriptional regulator, MerR family Length = 259 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/240 (45%), Positives = 162/240 (67%), Gaps = 3/240 (1%) Query: 1 MYRTKEIAAMVGVHPNTVRIYEEWGYISAVPRGVNGYRMYSDLHLFQLKIARTAFRCEIV 60 +Y+T E+A +VGVHPNTVR+YE+ I V R NGYR+++D H+ Q K+ARTAF+ E++ Sbjct: 4 IYKTAEVAKIVGVHPNTVRLYEKLDLIPKVNRLSNGYRVFTDYHIEQFKLARTAFKVEVL 63 Query: 61 QGLIRAKARAIVEASGKADFTQALEYAHAYLSHLEKEYSRALEAIELSEQWVCGIKATPA 120 Q +R K +V+ S K DF +A+ + Y+ +++E A EAIELS++ + I A Sbjct: 64 QNGLRKKIINVVKLSAKGDFQEAINCINDYIDQIKQERKNAEEAIELSKKLLLEIDAKDN 123 Query: 121 QT-YTRKETALVLDLSTEVVRNWERNGLITVHRLSNGSRVYTENEIKRLKMIRTLRTAHY 179 +TRK+TA L ++ + +RNWE NGL+TV R NG RVYTE++I RLK+IRTLR A+Y Sbjct: 124 HIFFTRKQTAGYLQVTMDTLRNWEMNGLLTVKRKQNGYRVYTESDINRLKIIRTLRCANY 183 Query: 180 SISAILRLMNQAEHMRWTNLNIKEVLNTPEEHEDIISVTDRLVYSLEQAIESAKELISML 239 S+SAILR++N + ++I+EV+N +E EDI++ D+L SL A ++A ++ L Sbjct: 184 SLSAILRMLNAISESK--EIDIREVINKTKEDEDIVTACDKLFTSLSDAEKNANSILKQL 241 >A5KJ84.1 A5KJ84_9FIRM Putative uncharacterized protein Length = 247 Score = 211 bits (536), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 108/240 (45%), Positives = 157/240 (65%), Gaps = 2/240 (0%) Query: 2 YRTKEIAAMVGVHPNTVRIYEEWGYISAVPRGVNGYRMYSDLHLFQLKIARTAFRCEIVQ 61 Y+T E+AAM+GVHPNTVR+YE+ I R NGYR+++D H++Q K+ R AF+ E++Q Sbjct: 4 YKTAEVAAMIGVHPNTVRLYEKMKLIPKPERLSNGYRVFTDFHIWQCKLIRLAFQVEVLQ 63 Query: 62 GLIRAKARAIVEASGKADFTQALEYAHAYLSHLEKEYSRALEAIELSEQWVCGIKATPAQ 121 +R K +V S +F A+ YL L +E A EAI++ +Q + G + Sbjct: 64 NGLRKKIVRMVTVSAAGEFDTAIILTEEYLKQLRQERRNAEEAIKIVKQLLSGGAQENSH 123 Query: 122 TYTRKETALVLDLSTEVVRNWERNGLITVHRLSNGSRVYTENEIKRLKMIRTLRTAHYSI 181 RK+ + +LD+S + +RNWE NGL+TV R +NG RVYT+ +I+RLK+IR+LR A+YS+ Sbjct: 124 NLKRKDVSNLLDISMDTLRNWEMNGLLTVKRKNNGYRVYTDEDIQRLKIIRSLRCANYSL 183 Query: 182 SAILRLMNQAEHMRWTNLNIKEVLNTPEEHEDIISVTDRLVYSLEQAIESAKELISMLRE 241 AI RL+ Q + N +I+ LNTP++ EDIISV DRL+ SL A +AK L+ ML+E Sbjct: 184 EAIRRLLQQLS--KNPNTDIRVALNTPKQTEDIISVCDRLIISLSDAETNAKFLLEMLQE 241 >C1FTY0.1 C1FTY0_CLOBJ Transcriptional regulator, MerR family Length = 254 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 105/240 (43%), Positives = 163/240 (67%), Gaps = 3/240 (1%) Query: 1 MYRTKEIAAMVGVHPNTVRIYEEWGYISAVPRGVNGYRMYSDLHLFQLKIARTAFRCEIV 60 +Y+T E+A ++GVHPNTVR+YE+ I V R NGYR+++D H+ Q +ARTAF+ E++ Sbjct: 4 LYKTAEVAKIIGVHPNTVRLYEKLKLIPRVNRLPNGYRVFTDYHIEQFNLARTAFKVEVL 63 Query: 61 QGLIRAKARAIVEASGKADFTQALEYAHAYLSHLEKEYSRALEAIELSEQWVCGIKATPA 120 Q +R K +V+ S K +F +A+ + Y++ +++E A EAIELS++ + I A Sbjct: 64 QNGLRKKIINVVKLSAKGEFQEAINCTNDYINQIKEERKNAEEAIELSKKLLSEIDAKDN 123 Query: 121 QT-YTRKETALVLDLSTEVVRNWERNGLITVHRLSNGSRVYTENEIKRLKMIRTLRTAHY 179 +TRK+T+ L ++ + +RNWE NGL+TV R NG RVYTE++I RLK+IRTLR A+Y Sbjct: 124 YIFFTRKQTSDYLQVTMDTLRNWEMNGLLTVKRKQNGYRVYTESDINRLKIIRTLRCANY 183 Query: 180 SISAILRLMNQAEHMRWTNLNIKEVLNTPEEHEDIISVTDRLVYSLEQAIESAKELISML 239 S+SAILR++N + ++I+EV+N +E EDII+ D+L+ SL A ++A ++ L Sbjct: 184 SLSAILRMLNAISESK--EIDIREVINKTKEDEDIITACDKLLTSLSDAEKNANSILKQL 241 >C1I736.1 C1I736_9CLOT Transcriptional regulator Length = 254 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 165/240 (68%), Gaps = 3/240 (1%) Query: 2 YRTKEIAAMVGVHPNTVRIYEEWGYISAVPRGVNGYRMYSDLHLFQLKIARTAFRCEIVQ 61 Y+T E+A ++G+HPNTVR+YE+ I R NGYR+++D H+ Q + RTA + E++Q Sbjct: 5 YKTTEVAKIIGIHPNTVRLYEDLELIPKANRLSNGYRIFNDYHIEQFNLVRTALKVEVLQ 64 Query: 62 GLIRAKARAIVEASGKADFTQALEYAHAYLSHLEKEYSRALEAIELSEQWVCGIKATPAQ 121 +R K I++ S K +F +A+ + Y++ ++ E A EAIE+S+Q + GIK + Sbjct: 65 NGLRKKIINIIKLSAKGEFEEAIICTNDYINQVKNERRNAEEAIEISKQLLLGIKNNESD 124 Query: 122 TY-TRKETALVLDLSTEVVRNWERNGLITVHRLSNGSRVYTENEIKRLKMIRTLRTAHYS 180 + TRK+TA L+++ + +RNWE NGL+++ R NG RVYT ++IK+LK+IRTLR A+YS Sbjct: 125 MFLTRKQTAEYLNITIDTLRNWEMNGLLSIKRKENGYRVYTSSDIKKLKIIRTLRCANYS 184 Query: 181 ISAILRLMNQAEHMRWTNLNIKEVLNTPEEHEDIISVTDRLVYSLEQAIESAKELISMLR 240 +++ILR++N + + ++IKEV+NTP+ +EDI++ D+L+ SL A ++A ++ LR Sbjct: 185 LASILRMINAISN--SSKVDIKEVINTPDNNEDIVTAFDKLLTSLNNAEKNANVILKQLR 242 >C1FTZ5.1 C1FTZ5_CLOBJ Transcriptional regulator, MerR family Length = 254 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/240 (43%), Positives = 162/240 (67%), Gaps = 3/240 (1%) Query: 1 MYRTKEIAAMVGVHPNTVRIYEEWGYISAVPRGVNGYRMYSDLHLFQLKIARTAFRCEIV 60 +Y+T E+A + GVHPNTVR+YE+ I V R NGYR+++D H+ Q K+ARTAF+ E++ Sbjct: 4 IYKTAEVAKITGVHPNTVRLYEKLELIPRVNRLPNGYRIFTDYHIEQFKLARTAFKVEVL 63 Query: 61 QGLIRAKARAIVEASGKADFTQALEYAHAYLSHLEKEYSRALEAIELSEQWVCGIKATPA 120 Q +R K +V+ S K +F +A+ + Y+ +++E A EAIELS++ + I A Sbjct: 64 QNGLRKKIINVVKLSAKGEFQEAINCTNDYIGQIKQEGKNAEEAIELSKKLLLEIDAKDN 123 Query: 121 QT-YTRKETALVLDLSTEVVRNWERNGLITVHRLSNGSRVYTENEIKRLKMIRTLRTAHY 179 +TRK+T+ L ++ + +RNWE NGL+TV R NG RVYTE++I RLK+IRTLR A+Y Sbjct: 124 YIFFTRKQTSDYLQVTMDTLRNWEMNGLLTVKRKQNGYRVYTESDINRLKIIRTLRCANY 183 Query: 180 SISAILRLMNQAEHMRWTNLNIKEVLNTPEEHEDIISVTDRLVYSLEQAIESAKELISML 239 S+SAILR++N + ++I+EV+N +E EDI++ D+L+ SL A ++A ++ L Sbjct: 184 SLSAILRMLNAISESK--EIDIREVINKTKEDEDIVTACDKLLTSLSDAEKNANSILKQL 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,300,894,765 Number of extensions: 46918228 Number of successful extensions: 159066 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 159235 Number of HSP's successfully gapped: 48 Length of query: 247 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 115 Effective length of database: 1,817,122,223 Effective search space: 208969055645 Effective search space used: 208969055645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)