BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0074.0002.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GBB0.1 A7GBB0_CLOBL Putative drug resistance ABC-2 type transp... 106 1e-21 B1QLQ4.1 B1QLQ4_CLOBO Putative drug resistance ABC-2 type transp... 105 1e-21 B1Q6H7.1 B1Q6H7_CLOBO Putative drug resistance ABC-2 type transp... 105 1e-21 B1IEQ6.1 B1IEQ6_CLOBK Putative drug resistance ABC-2 type transp... 105 2e-21 A5HZQ3.1 A5HZQ3_CLOBH Putative drug resistance ABC-transporter,m... 103 5e-21 >A7GBB0.1 A7GBB0_CLOBL Putative drug resistance ABC-2 type transporter, permease protein Length = 247 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 3/129 (2%) Query: 1 MSTMFALLKVEGKLVWKGIDILIFGICFPVILAALFGYVLSRDASAGSSDF---ELSYAA 57 M ++LK E KL +G+D+ IF IC PV++ + G + + +DF E S+AA Sbjct: 1 MKVFKSMLKTELKLSLRGMDMFIFAICMPVLVTVILGVIYGNKPAFPGADFTFMEQSFAA 60 Query: 58 VITIGVLATGVMGLPLTIADYRHRGILKRFQVTPVSPLQILFAQGIIQLSSALVSFMGVT 117 V TI + A GVMGLPL +++YRHR ILKRF+VTPVSP IL QG+I A+VS + V Sbjct: 61 VSTIAICAGGVMGLPLVLSEYRHRKILKRFRVTPVSPSMILVVQGVIYALYAIVSLILVY 120 Query: 118 LVMPRFVQW 126 L F ++ Sbjct: 121 LTAKIFFKF 129 >B1QLQ4.1 B1QLQ4_CLOBO Putative drug resistance ABC-2 type transporter, permease protein Length = 247 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 3/129 (2%) Query: 1 MSTMFALLKVEGKLVWKGIDILIFGICFPVILAALFGYVLSRDASAGSSDF---ELSYAA 57 M +LK E KL +G+D+ IF IC PV++ + G + + +DF E S+AA Sbjct: 1 MKVFKTMLKTELKLSLRGMDMFIFAICMPVLVTVILGVIYGNKPAFPGADFTFMEQSFAA 60 Query: 58 VITIGVLATGVMGLPLTIADYRHRGILKRFQVTPVSPLQILFAQGIIQLSSALVSFMGVT 117 V TI + A GVMGLPL +++YRHR ILKRF+VTPVSP IL QG+I A+VS + V Sbjct: 61 VSTIAICAGGVMGLPLVLSEYRHRKILKRFRVTPVSPSMILVVQGVIYALYAIVSLILVY 120 Query: 118 LVMPRFVQW 126 L F ++ Sbjct: 121 LTAKIFFKF 129 >B1Q6H7.1 B1Q6H7_CLOBO Putative drug resistance ABC-2 type transporter, permease protein Length = 247 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 3/129 (2%) Query: 1 MSTMFALLKVEGKLVWKGIDILIFGICFPVILAALFGYVLSRDASAGSSDF---ELSYAA 57 M ++LK E KL +G+D+ IF IC PV++ + G + + +DF E S+AA Sbjct: 1 MKVFKSMLKTELKLSLRGMDMFIFAICMPVLVTVILGAIYGNKPAFPGADFTFMEQSFAA 60 Query: 58 VITIGVLATGVMGLPLTIADYRHRGILKRFQVTPVSPLQILFAQGIIQLSSALVSFMGVT 117 V TI + A GVMGLPL +++YRHR ILKRF+VTPVSP IL QG+I A+VS + V Sbjct: 61 VSTIAICAGGVMGLPLVLSEYRHRKILKRFRVTPVSPSMILVIQGVIYALYAIVSLILVY 120 Query: 118 LVMPRFVQW 126 L F ++ Sbjct: 121 LTAKVFFKF 129 >B1IEQ6.1 B1IEQ6_CLOBK Putative drug resistance ABC-2 type transporter, permease protein Length = 247 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 3/129 (2%) Query: 1 MSTMFALLKVEGKLVWKGIDILIFGICFPVILAALFGYVLSRDASAGSSDF---ELSYAA 57 M +LK E KL +G+D+ IF IC PV++ + G + + +DF E S+AA Sbjct: 1 MKVFKTMLKTELKLSLRGMDMFIFAICMPVLVTVILGVIYGNKPAFPGADFTFMEQSFAA 60 Query: 58 VITIGVLATGVMGLPLTIADYRHRGILKRFQVTPVSPLQILFAQGIIQLSSALVSFMGVT 117 V TI + A GVMGLPL +++YRHR ILKRF+VTPVSP IL QG+I A+VS + V Sbjct: 61 VSTIAICAGGVMGLPLVLSEYRHRKILKRFRVTPVSPSMILVVQGVIYALYAIVSLILVY 120 Query: 118 LVMPRFVQW 126 L F ++ Sbjct: 121 LTAKIFFKF 129 >A5HZQ3.1 A5HZQ3_CLOBH Putative drug resistance ABC-transporter,membrane protein Length = 248 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 79/129 (61%), Gaps = 3/129 (2%) Query: 1 MSTMFALLKVEGKLVWKGIDILIFGICFPVILAALFGYVLSRDASAGSSDF---ELSYAA 57 M +LK E KL +G+D+ IF IC PV++ + G + + ++F E S+AA Sbjct: 2 MKVFKTMLKTELKLSLRGMDMFIFAICMPVLVTVILGVIYGNKPAFPGANFTFMEQSFAA 61 Query: 58 VITIGVLATGVMGLPLTIADYRHRGILKRFQVTPVSPLQILFAQGIIQLSSALVSFMGVT 117 V TI + A GVMGLPL +++YRHR ILKRF+VTPVSP IL QG+I A+VS + V Sbjct: 62 VSTIAICAGGVMGLPLVLSEYRHRKILKRFRVTPVSPSMILVVQGVIYALYAIVSLILVY 121 Query: 118 LVMPRFVQW 126 L F ++ Sbjct: 122 LTAKIFFKF 130 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.145 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,000,315,043 Number of extensions: 39012922 Number of successful extensions: 145064 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 145072 Number of HSP's successfully gapped: 48 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)