BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0013.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGY8.1 B1DGY8_9BACL Binding-protein-dependent transport system... 471 e-131 B1D7X2.1 B1D7X2_9BACL Binding-protein-dependent transport system... 455 e-126 B3KDQ7.1 B3KDQ7_9BACI Binding-protein-dependent transport system... 435 e-120 Q9KBL5.1 Q9KBL5_BACHD Transmembrane lipoprotein 427 e-118 Q5WIY2.1 Q5WIY2_BACSK Polysaccharide ABC transporter permease 395 e-108 >B1DGY8.1 B1DGY8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/299 (75%), Positives = 262/299 (87%) Query: 20 WPKFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYKPGKSFFEQKWVGLQYFRELF 79 W + ++Q+YLY M+VPFVL+ F+F+YLPLWGWTMAFQ+++ GK FF+QKWVG FR LF Sbjct: 7 WQRIVRQRYLYYMSVPFVLFVFLFSYLPLWGWTMAFQQFRVGKFFFDQKWVGFDNFRMLF 66 Query: 80 QDEQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQIFLKRFVQTVSYLPHFVSWVV 139 QD+QFFNALRNTLAMS MGL+A F IPI+FAVLLNE+R FLKRFVQTVSYLPHFVSWVV Sbjct: 67 QDDQFFNALRNTLAMSFMGLIASFTIPILFAVLLNEVRISFLKRFVQTVSYLPHFVSWVV 126 Query: 140 AAGIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFWGIVTASDVWKETGWNTIIYL 199 AGI+TKMLS +NG VN +L+ LHLI EPIQFMAK NLFW +VT++D+WKETGWN IIYL Sbjct: 127 VAGIVTKMLSAENGVVNQILLGLHLIHEPIQFMAKENLFWYLVTSADIWKETGWNAIIYL 186 Query: 200 AAISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVIILLIMSIGHLISIGFEKQFLLG 259 AAI+GIGPELYEAARVDGASRL+Q+ +ITLPGIR+T+IILLIMSIGHLISIGFEKQFLLG Sbjct: 187 AAIAGIGPELYEAARVDGASRLKQIWHITLPGIRSTIIILLIMSIGHLISIGFEKQFLLG 246 Query: 260 NNLVRDYSQTLDLYALNYGLGLGRFSFGTAINIFNXXXXXXXXXXANGIFKKITKESII 318 N+LV++ S+ LDLYALNYGLG+GR+SFGTAINIFN ANGIFKKITKESI+ Sbjct: 247 NSLVKEKSEVLDLYALNYGLGMGRYSFGTAINIFNSVVSLILLFVANGIFKKITKESIM 305 >B1D7X2.1 B1D7X2_9BACL Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/319 (67%), Positives = 260/319 (81%), Gaps = 1/319 (0%) Query: 1 MKAITAKVQPEPKKPASR-FWPKFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYK 59 MKA+T V + +K R FW ++ +YLYMM++PF++W FVF+Y PLWGWTMAFQK+K Sbjct: 1 MKAVTTSVPQQTRKKRERNFWKTAIRNRYLYMMSLPFIIWVFVFSYYPLWGWTMAFQKFK 60 Query: 60 PGKSFFEQKWVGLQYFRELFQDEQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQI 119 P KSF+EQ WVG F+ LFQD+ F+ +RNTLAMS MG++AGF +PI+FAVLLNE+R + Sbjct: 61 PAKSFWEQDWVGFDQFKTLFQDDTFYLVMRNTLAMSFMGIIAGFAVPIIFAVLLNEVRSM 120 Query: 120 FLKRFVQTVSYLPHFVSWVVAAGIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFW 179 KRF QTVSYLPHFVSWVV AGI++KMLS D+G VN++LM L +I PIQF+AK + FW Sbjct: 121 AFKRFAQTVSYLPHFVSWVVVAGIVSKMLSADHGTVNEILMWLGIIDTPIQFLAKPHYFW 180 Query: 180 GIVTASDVWKETGWNTIIYLAAISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVIIL 239 GIVT SDVWKE GWNTIIYLAAI+GI E+YEAARVDGA+R++Q+ +ITLPGIR+T++IL Sbjct: 181 GIVTVSDVWKEMGWNTIIYLAAIAGISQEMYEAARVDGANRIRQIWHITLPGIRSTIVIL 240 Query: 240 LIMSIGHLISIGFEKQFLLGNNLVRDYSQTLDLYALNYGLGLGRFSFGTAINIFNXXXXX 299 LIMSIGHLI IGFEKQFLLGNNLVRDYSQ LDLYAL YGL + R+SFGTA+NIFN Sbjct: 241 LIMSIGHLIQIGFEKQFLLGNNLVRDYSQVLDLYALEYGLQMSRYSFGTAVNIFNSVVSI 300 Query: 300 XXXXXANGIFKKITKESII 318 ANG+FKKITKESI+ Sbjct: 301 ILLFMANGLFKKITKESIM 319 >B3KDQ7.1 B3KDQ7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/321 (67%), Positives = 253/321 (78%), Gaps = 4/321 (1%) Query: 1 MKAIT---AKVQPEPKKPASRFWPKFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQK 57 MKA+T + +QP KK FW F +QK LY M++PF++ F+F+YLP+WGW MAFQ Sbjct: 1 MKAVTKTESSIQPAAKKKKG-FWTTFKEQKVLYGMSLPFIVIVFIFSYLPVWGWLMAFQN 59 Query: 58 YKPGKSFFEQKWVGLQYFRELFQDEQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELR 117 YKPGK FEQKWVGL +F LF D++F+ LRNTLAMS MGL+ GF IPI+FAVLLNELR Sbjct: 60 YKPGKGIFEQKWVGLDHFAALFADDKFYLVLRNTLAMSFMGLIVGFTIPILFAVLLNELR 119 Query: 118 QIFLKRFVQTVSYLPHFVSWVVAAGIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNL 177 KR VQT+SYLPHFVSWVV AGI+TKMLSTD GAVN LLM L LI +PIQFMA+GNL Sbjct: 120 GSVFKRTVQTISYLPHFVSWVVVAGIVTKMLSTDGGAVNQLLMWLGLIDQPIQFMAQGNL 179 Query: 178 FWGIVTASDVWKETGWNTIIYLAAISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVI 237 FW IVT SD+WKE GW+ IIYLAAI+GI E +EAA+VDGASR++Q+ +ITLP I T+ Sbjct: 180 FWYIVTGSDIWKEMGWSAIIYLAAITGIDQEQFEAAKVDGASRIRQIWHITLPSIAPTIA 239 Query: 238 ILLIMSIGHLISIGFEKQFLLGNNLVRDYSQTLDLYALNYGLGLGRFSFGTAINIFNXXX 297 ILLIMSIGHLISIGFEKQFLLGN LV DYS+ LDLYALNYGLG+GRFSFGTAI +FN Sbjct: 240 ILLIMSIGHLISIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGMGRFSFGTAIGMFNSVV 299 Query: 298 XXXXXXXANGIFKKITKESII 318 ANG+FKK TK+SI+ Sbjct: 300 SIILLLLANGVFKKFTKQSIM 320 >Q9KBL5.1 Q9KBL5_BACHD Transmembrane lipoprotein Length = 319 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/294 (68%), Positives = 244/294 (82%) Query: 25 QQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYKPGKSFFEQKWVGLQYFRELFQDEQF 84 QQKYLY+M++PFV W VFNY PLWGWTMAFQ ++PG SFFEQ+WVGLQ+F ELFQD +F Sbjct: 26 QQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRF 85 Query: 85 FNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQIFLKRFVQTVSYLPHFVSWVVAAGII 144 + LRNTLAMS+MGL+ GF +PI+FAVLLNE+R + KR VQTVSYLPHFVSWVV AGI+ Sbjct: 86 YLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIV 145 Query: 145 TKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFWGIVTASDVWKETGWNTIIYLAAISG 204 TKMLS D G VN LLM+ + +P+QFMAKG FW IVT SD+WKE GWN+II+LAA++G Sbjct: 146 TKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAG 205 Query: 205 IGPELYEAARVDGASRLQQVRNITLPGIRTTVIILLIMSIGHLISIGFEKQFLLGNNLVR 264 I P+LYEAA+VDGASR +Q+ +ITLPGIR T++++LI+SIGHL++IGFEKQFLLGN LV Sbjct: 206 IDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVV 265 Query: 265 DYSQTLDLYALNYGLGLGRFSFGTAINIFNXXXXXXXXXXANGIFKKITKESII 318 DYS+ LDLYALNYGLGLGR+S+GTAI IFN ANGIFK+ T +S++ Sbjct: 266 DYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSVM 319 >Q5WIY2.1 Q5WIY2_BACSK Polysaccharide ABC transporter permease Length = 321 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/321 (59%), Positives = 242/321 (75%), Gaps = 3/321 (0%) Query: 1 MKAITAKVQPEPKKPASR---FWPKFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQK 57 MK I K P + F QQ+YLY M++PFV W FVF+YLPL+GWTMAFQ Sbjct: 1 MKLIKKKAHSVAAAPLGQKRSFRQTVWQQRYLYAMSLPFVAWVFVFHYLPLFGWTMAFQD 60 Query: 58 YKPGKSFFEQKWVGLQYFRELFQDEQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELR 117 Y+PG +FFEQ+WVG ++F ELFQDE+F+ LRNTL MSL+GLL GF PI+FAVLLNE R Sbjct: 61 YRPGLAFFEQEWVGFKHFIELFQDERFYLVLRNTLVMSLLGLLVGFTFPILFAVLLNEAR 120 Query: 118 QIFLKRFVQTVSYLPHFVSWVVAAGIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNL 177 K+ VQTVSYLPHFVSWVV AGI+TKMLS D G VN++L++ +PIQFM KG Sbjct: 121 AKLFKKTVQTVSYLPHFVSWVVVAGIVTKMLSVDGGIVNEVLVATGTADKPIQFMTKGEW 180 Query: 178 FWGIVTASDVWKETGWNTIIYLAAISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVI 237 FW IVT +D+WKE GWN+II+LAA++G+ P+LYEAA+VDGASR +Q+ +ITLPGIR T++ Sbjct: 181 FWIIVTLADLWKEMGWNSIIFLAAMAGVDPQLYEAAKVDGASRWRQIWHITLPGIRPTIL 240 Query: 238 ILLIMSIGHLISIGFEKQFLLGNNLVRDYSQTLDLYALNYGLGLGRFSFGTAINIFNXXX 297 ++LI+SIG L++IGFEKQFLLGN V +YS+ LDLYALNYG+ L RFS+GTAI IFN Sbjct: 241 VVLILSIGSLMTIGFEKQFLLGNPTVVNYSEVLDLYALNYGINLSRFSYGTAIGIFNSLV 300 Query: 298 XXXXXXXANGIFKKITKESII 318 ANG+FK+ +S++ Sbjct: 301 AIILLFIANGLFKRYANQSVM 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,752,402,678 Number of extensions: 69071456 Number of successful extensions: 242650 Number of sequences better than 1.0e-05: 4943 Number of HSP's gapped: 239041 Number of HSP's successfully gapped: 4943 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)