BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0012.p (300 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7X1.1 B1D7X1_9BACL Binding-protein-dependent transport system... 397 e-109 B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport system... 368 e-100 B1DGY7.1 B1DGY7_9BACL Binding-protein-dependent transport system... 364 4e-99 Q9KBL4.1 Q9KBL4_BACHD Transmembrane lipoprotein 344 6e-93 Q5WIY1.1 Q5WIY1_BACSK Polysaccharide ABC transporter permease 333 2e-89 >B1D7X1.1 B1D7X1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/301 (65%), Positives = 230/301 (76%), Gaps = 2/301 (0%) Query: 1 MLSKKL-AAASWSDRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPR 59 M SK+L A SDR+ PFLNVLA+SFNDS DS++GGIT++PR Sbjct: 1 MTSKRLLGGAPLSDRLLSVFVYVFVIFVMIITLYPFLNVLALSFNDSVDSVRGGITIFPR 60 Query: 60 VFTVKNYETIFAYSGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFL 119 FT +NY+ IF++ GL+TG K +SASMLAFTLSR DFQ R+FVS FL Sbjct: 61 DFTTENYKVIFSFGGLITGFKISVLRTVAGTIVGLISASMLAFTLSRPDFQGRKFVSVFL 120 Query: 120 ALTMYISGGLIPVYILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKL 179 ALTMY+SGGLIPVY LI++L+MMGTF VY+LPGLVSAFNVFVIRSF+DG+PYALQESAKL Sbjct: 121 ALTMYVSGGLIPVYFLIRDLHMMGTFWVYILPGLVSAFNVFVIRSFMDGIPYALQESAKL 180 Query: 180 DGANDFTIYWRVILPLTKPALATIALFLAVGQWNAWFDTYLYNGSKDGLTTLQFELMKVI 239 DGANDFTIYWR+ILP+ KPALATIALFLAVGQWN+WFDTYLYNGSK+ LTTLQFELMKV+ Sbjct: 181 DGANDFTIYWRIILPMAKPALATIALFLAVGQWNSWFDTYLYNGSKESLTTLQFELMKVL 240 Query: 240 QSTTT-NADNFRGRNMTEVMAQISPESVKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSV 298 QSTT+ N + NMT++M+ +SPESVKMA YPFLQRYFVKGMTLG+V Sbjct: 241 QSTTSGNNVDIHNSNMTQMMSSVSPESVKMAITIVVTVPILVVYPFLQRYFVKGMTLGAV 300 Query: 299 K 299 K Sbjct: 301 K 301 >B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/299 (60%), Positives = 216/299 (72%), Gaps = 1/299 (0%) Query: 3 SKKLAAASWSDRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPRVFT 62 +K S SDR+FD PFLNVLAIS NDS D+++GGI ++PR FT Sbjct: 4 TKAAFKPSLSDRVFDIANFTIMALVMIVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFT 63 Query: 63 VKNYETIFAYSGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFLALT 122 + NY IF Y GL+TG K +S +ML + LSRVDFQ R+F+STFLALT Sbjct: 64 LDNYVQIFKYDGLVTGAKNTILRTLAGTFLGLLSGTMLGYVLSRVDFQGRKFMSTFLALT 123 Query: 123 MYISGGLIPVYILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKLDGA 182 MY SGG+IPV+ILI++LNMM +F VY++PG+VSAFNVFVIRSFID LPY+LQESAKLDGA Sbjct: 124 MYFSGGMIPVFILIRDLNMMNSFLVYIIPGMVSAFNVFVIRSFIDSLPYSLQESAKLDGA 183 Query: 183 NDFTIYWRVILPLTKPALATIALFLAVGQWNAWFDTYLYNGSKDGLTTLQFELMKVIQST 242 NDFTIY+++ILPL KP LATIALFLAVGQWN+W DTYLYNG+ LTTLQFELMKV+QST Sbjct: 184 NDFTIYYKIILPLCKPVLATIALFLAVGQWNSWLDTYLYNGNAPHLTTLQFELMKVLQST 243 Query: 243 TTNADN-FRGRNMTEVMAQISPESVKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSVKS 300 G+NM E++ Q+SPES+KMA YPFLQRYFVKGMTLG+VKS Sbjct: 244 QGQTSGMMTGQNMAEIVKQVSPESIKMAITIVVTVPILLVYPFLQRYFVKGMTLGAVKS 302 >B1DGY7.1 B1DGY7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 186/293 (63%), Positives = 221/293 (75%), Gaps = 2/293 (0%) Query: 10 SWSDRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETI 69 S ++R+FD PFLNVLAIS NDSTD+++GGITV+PR T NY I Sbjct: 6 SLTNRLFDVIVYLVISLVAVCTLYPFLNVLAISLNDSTDTVRGGITVFPRHLTFDNYSLI 65 Query: 70 FAYSGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGL 129 F+++GL+TGLK +S+SMLA+ LSR +F R+F+S FLALTMY+SGGL Sbjct: 66 FSFAGLLTGLKISVLRTLAGTVLGLISSSMLAYVLSRAEFDGRKFLSMFLALTMYVSGGL 125 Query: 130 IPVYILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYW 189 IP Y+L+++++++GTF VYVLPGLVSAFNVF+IRSFIDGLPYALQESAKLDGANDFTIYW Sbjct: 126 IPFYLLMRDMHLIGTFWVYVLPGLVSAFNVFIIRSFIDGLPYALQESAKLDGANDFTIYW 185 Query: 190 RVILPLTKPALATIALFLAVGQWNAWFDTYLYNGSKDGLTTLQFELMKVIQSTT--TNAD 247 RVILPL PALAT+ALFLAVGQWN+WFDTYLYNGSK+ LTTLQFELMKV+QST +N Sbjct: 186 RVILPLLLPALATVALFLAVGQWNSWFDTYLYNGSKEHLTTLQFELMKVLQSTQVGSNGQ 245 Query: 248 NFRGRNMTEVMAQISPESVKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSVKS 300 G NM +VM +ISPESVKMA YPFLQRYFV GMTLG+VKS Sbjct: 246 EVNGMNMNQVMNRISPESVKMAITIIVTVPILLVYPFLQRYFVTGMTLGAVKS 298 >Q9KBL4.1 Q9KBL4_BACHD Transmembrane lipoprotein Length = 297 Score = 344 bits (883), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 166/295 (56%), Positives = 211/295 (71%), Gaps = 3/295 (1%) Query: 9 ASWSDRIFDXXXXXXXXXXXXXXXXPFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYET 68 W DR+FD PFLNVLAIS NDS D+++GGI ++PR FT++NY Sbjct: 3 GKWGDRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLENYRV 62 Query: 69 IFAYSGLMTGLKXXXXXXXXXXXXXXVSASMLAFTLSRVDFQARRFVSTFLALTMYISGG 128 IF Y L+TG S++M+AFTLSR DFQAR+FVST + LT+Y SGG Sbjct: 63 IFEYDHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSGG 122 Query: 129 LIPVYILIKNLNMMGTFGVYVLPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIY 188 LIP Y+LI+ LN++ TF VYVLPG+V+AF++ ++RSF+DGLPY+LQESAK+DGANDFTI+ Sbjct: 123 LIPGYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTIF 182 Query: 189 WRVILPLTKPALATIALFLAVGQWNAWFDTYLYNGSKDGLTTLQFELMKVIQSTT---TN 245 WR+ILPL P LATIALF+AVGQWNAWFDTYLYN S LTTLQ+ELMK++Q+TT ++ Sbjct: 183 WRIILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMSASD 242 Query: 246 ADNFRGRNMTEVMAQISPESVKMAXXXXXXXXXXXXYPFLQRYFVKGMTLGSVKS 300 A+ FRG + + +SPES+KMA YPF+QR+FVKGMTLG+VKS Sbjct: 243 ANAFRGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVKS 297 >Q5WIY1.1 Q5WIY1_BACSK Polysaccharide ABC transporter permease Length = 304 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 205/271 (75%), Gaps = 4/271 (1%) Query: 34 PFLNVLAISFNDSTDSIKGGITVYPRVFTVKNYETIFAYSGLMTGLKXXXXXXXXXXXXX 93 PFLNVLAIS NDSTD+++GGI ++PR +T++NY TIF Y L+TG Sbjct: 34 PFLNVLAISLNDSTDTVRGGIYIWPREWTLENYRTIFQYDHLVTGFINSVLRTIIGTVLG 93 Query: 94 XVSASMLAFTLSRVDFQARRFVSTFLALTMYISGGLIPVYILIKNLNMMGTFGVYVLPGL 153 S++M+AFTLSR DFQ R+FVST L LT+Y +GGLIP Y+L++ LN++ TF VYVLPG+ Sbjct: 94 IFSSAMVAFTLSRADFQGRKFVSTMLVLTLYFTGGLIPGYMLMRELNLINTFWVYVLPGM 153 Query: 154 VSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVILPLTKPALATIALFLAVGQWN 213 V+AF++ ++RSF+DGLPY+LQESAK+DGANDFTI+WR+I+PL P LATIALF+AVGQWN Sbjct: 154 VNAFHIIIVRSFMDGLPYSLQESAKMDGANDFTIFWRIIMPLCTPVLATIALFVAVGQWN 213 Query: 214 AWFDTYLYNGSKDGLTTLQFELMKVIQSTTT----NADNFRGRNMTEVMAQISPESVKMA 269 AWFDTYLYNGS LTTLQ+ELMK++Q+TT +A+ +R + + +SPES+KMA Sbjct: 214 AWFDTYLYNGSNPDLTTLQYELMKILQNTTMGGSGDANAYRSISGDQAAQTVSPESIKMA 273 Query: 270 XXXXXXXXXXXXYPFLQRYFVKGMTLGSVKS 300 YPFLQR+FV+GMTLG+VKS Sbjct: 274 ISMVTVVPILLVYPFLQRFFVQGMTLGAVKS 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,359,777,449 Number of extensions: 47784892 Number of successful extensions: 161851 Number of sequences better than 1.0e-05: 4616 Number of HSP's gapped: 159235 Number of HSP's successfully gapped: 4616 Length of query: 300 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 165 Effective length of database: 1,788,859,178 Effective search space: 295161764370 Effective search space used: 295161764370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)