BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0009.p (955 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF27.1 B1DF27_9BACL S-layer domain protein 228 4e-57 B0TD58.1 B0TD58_HELMI Multidomain protein with s-layer homology ... 226 7e-57 A1RDH5.1 A1RDH5_ARTAT Putative uncharacterized protein 209 9e-52 A1RDK8.1 A1RDK8_ARTAT Putative uncharacterized protein 203 7e-50 B1D9D3.1 B1D9D3_9BACL S-layer domain protein 203 9e-50 >B1DF27.1 B1DF27_9BACL S-layer domain protein Length = 1979 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 190/386 (49%), Gaps = 9/386 (2%) Query: 569 AGSEAAQVAVTQXXXXXXXXXXXXXXXXSKRVVIAVNQAAGATAYEVXXXXXXXXXXXTG 628 AGS+ A++++T K++ + + AAGA Y + Sbjct: 1603 AGSKHAKLSLTAALLDQAFSKATAGQDGKKKITVVIPSAAGANGYSLELPSSYVNQQSPD 1662 Query: 629 QSLEIQTVVGAVVLPGGMLTAEQAAQNAAVVLRISAADAGSLPAEITAASAGRPVVKLSL 688 + +E+ T G ++L ML + V + I +A+ ++ RPVV LS+ Sbjct: 1663 KQIELVTPTGTILLSSDMLKPDAGKLGQTVTISIGSANTSGWSEQLKKKLGDRPVVDLSI 1722 Query: 689 SIGGKEISWQKSPAQVQVSIPYRLTAAELLNSDYLTVRYIDEAGVSHPVASGKYDPVSAA 748 G+ I W S + V VSIPY +AAE ++ LTV YID +G PV SG+Y + + Sbjct: 1723 QSAGQTIDWHNSQSPVTVSIPYTPSAAEKADAKKLTVWYIDGSGKPFPVPSGQYKEAAGS 1782 Query: 749 VTFTARHFSTYAVVMNRISFNDLDASHWAKKPVEVLAAKGIVNGVSAGSYAPAAQISRAD 808 + FT +HFS YAV + SF DL+ WAK+ +EVLAAKGI+NGVS SYAP A I+RAD Sbjct: 1783 IVFTTKHFSQYAVAFVQKSFGDLNGYAWAKEAIEVLAAKGIINGVSDTSYAPGASITRAD 1842 Query: 809 YAVMLVRAFGLDGSAEAAATRFTDVLPGSYYYEAVNTAKALGIASGNTDGSFNPAGIITR 868 + +LV FG A F DV YY AV TAKALGI +G FNP ITR Sbjct: 1843 FVKLLVDTFGF---ASDTPGSFADVNSNRYYANAVATAKALGITNGAGGNRFNPEAPITR 1899 Query: 869 QEMIVMTDRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRMLQIGWLQG 928 +E +RAL ++ +++ G LQG Sbjct: 1900 EEAATFIERAL------TVAKAGLPAGTEDVLAVFSDANQISAYAKNSISALVKAGLLQG 1953 Query: 929 NSGLIQPEGTASRAEAAVLLYRICTE 954 N GL++P+G +RAEAAVL YRI + Sbjct: 1954 NDGLLEPQGQLTRAEAAVLFYRIYNQ 1979 >B0TD58.1 B0TD58_HELMI Multidomain protein with s-layer homology region, glug motif, ig motif, i-set domain, pkd domain Length = 2940 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 131/351 (37%), Positives = 189/351 (53%), Gaps = 9/351 (2%) Query: 601 VIAVNQAAGATAYEVXXXXXXXXXXXTGQSLEIQTVVGAVVLPGGMLTAEQAAQNAAVVL 660 V+ V +G +Y V +L T G++ +P GML + + Sbjct: 2595 VLTVPSISGVNSYTVGIPAASLSGSQGEGALTFSTGAGSITIPSGMLAGIPETEGKKAGI 2654 Query: 661 RISAADAGSLPAEITAASAGRPVVKLSLSIGGKEISWQKSPAQVQVSIPYRLTAAELLNS 720 I+ D SLP ++ A RP+V+L+L++ GK+ +W A V VSIPY TAAEL N Sbjct: 2655 TIARGDRTSLPEDVKTAIGDRPIVQLTLTLDGKQTNWSNPDAPVTVSIPYTPTAAELANP 2714 Query: 721 DYLTVRYIDEAGVSHPVASGKYDPVSAAVTFTARHFSTYAVVMNRISFNDLDASHWAKKP 780 +++ V YID +G V +G+YDP + VTFT HFS YAV +F DL + WA+KP Sbjct: 2715 EHIVVWYIDGSGNVVSVPNGRYDPATGTVTFTTTHFSYYAVAYVHKTFGDLGGAEWARKP 2774 Query: 781 VEVLAAKGIVNGVSAGSYAPAAQISRADYAVMLVRAFGLDGSAEAAATRFTDVLPGSYYY 840 VEV+A+KGI++G G+++PAA I+RADY V+L+R GL + F DV PG+YYY Sbjct: 2775 VEVMASKGIISGTGKGTFSPAANITRADYLVLLIRTLGLMAEFDG---NFDDVEPGAYYY 2831 Query: 841 EAVNTAKALGIASGNTDGSFNPAGIITRQEMIVMTDRALXXXXXXXXXXXXXXXXXXXXX 900 EA+ AK LGIA+G+ + FNP I+RQ+M+V+T RAL Sbjct: 2832 EALGIAKKLGIAAGSGNNRFNPKESISRQDMMVLTARAL------EKFRGLKAVDANGLL 2885 Query: 901 XXXXXXXXXXXXXXXXVNRMLQIGWLQGNSGLIQPEGTASRAEAAVLLYRI 951 + +++ G ++G+ + P A+RAEAAV LYRI Sbjct: 2886 DKYSDKGDIAGYAANSLATLVKEGLIKGSGDRLNPRANATRAEAAVFLYRI 2936 >A1RDH5.1 A1RDH5_ARTAT Putative uncharacterized protein Length = 1450 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 209/360 (58%), Gaps = 17/360 (4%) Query: 5 ADKSIKLTRSSNSGNTSMSQTFAPGTLKGVVTLSADVMKLD-NAGSTNWISLPYIYSSAG 63 A ++ +LTR++NSG+TS+ + ++ LKG+VT+ AD+M+ D G+TNW S+PY+Y + G Sbjct: 829 ATRAFRLTRNTNSGSTSLHRNYSQ-PLKGLVTVEADIMRRDATDGTTNWFSVPYLYGTDG 887 Query: 64 TASTNVGVSLAFSKGQIVAYKGGTSTNLMPYETNKWYNLRLVMNTGSGKFXXXXXXXXXX 123 + VS+AF+KG IVAY+G S NLM YE +WY L L ++T + +F Sbjct: 888 VRA----VSVAFNKGDIVAYQGTESKNLMRYEQGRWYKLTLEVDTVNQRFDLLIDGKRVV 943 Query: 124 XQAAFRNK-IPDIGRIDYYANSSNYGTAYLDNVQLYQGIPYERNDAGLSGLTADLGPLTK 182 A FR+ + I R++YYANSSNYGT +DN+++ QG ++ + L+ + D GP + Sbjct: 944 DDATFRSPLVGGIARVEYYANSSNYGTIQVDNLRILQGTSRDKANTALTAVETDAGPALQ 1003 Query: 183 QGEDYSLDVPYFMDSVQLTATASSPNIASLTINGIPAVSGQPAGEVALAEGLTTIPVVVT 242 G + LDVP SV++ A + ++++TING A G + +AL EG TI +VVT Sbjct: 1004 DGTGWRLDVPAGTQSVRVAAKPVAAVVSAITINGAAAQPGVLSDPIALTEGTNTIQIVVT 1063 Query: 243 AEDGLTTHTVNVIINRTPAALDSTLQNLQVAASGGGGXXXXXXFSYNRDSYTVNVADSVY 302 AE+G T+ T + + R P A D+TL++L V ++ F+ + Y V Sbjct: 1064 AENG-TSQTHTLTVERAPLAADATLRSLAVESA-----TLTPAFASDVQEYEVTTDPGAT 1117 Query: 303 GLTVTPVAGAPGTEIRVNGNVVGSTQTSAEIPLRASSSEIT-VTTASADGTDYRSYSITV 361 L VTP A P +EI VNG V Q+ + + S+ ++ + +SADGT +YS+TV Sbjct: 1118 ELVVTPTATGPASEISVNGQTV---QSGSAATVAVSNGQVVPIRVSSADGTALVTYSLTV 1174 >A1RDK8.1 A1RDK8_ARTAT Putative uncharacterized protein Length = 620 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 203/359 (56%), Gaps = 17/359 (4%) Query: 7 KSIKLTRSSNSGNTSMSQTFAPGTLKGVVTLSADVMKLD-NAGSTNWISLPYIYSSAGTA 65 ++ +LTR++NSG+TS+ + + LKG+VT+ AD+M+ D G+TNW S+PY+Y + G Sbjct: 51 RAFRLTRTTNSGSTSIQRNYTQ-PLKGLVTVEADIMRRDATDGTTNWFSVPYLYGTDGVR 109 Query: 66 STNVGVSLAFSKGQIVAYKGGTSTNLMPYETNKWYNLRLVMNTGSGKFXXXXXXXXXXXQ 125 + VS+AF+KG IVAY+G S NLM YE +WY L L ++T + +F Sbjct: 110 A----VSVAFNKGDIVAYQGTESKNLMRYEQGRWYKLTLEVDTINQRFDLLIDGKRLVDD 165 Query: 126 AAFRNKIPD-IGRIDYYANSSNYGTAYLDNVQLYQGIPYERNDAGLSGLTADLGPLTKQG 184 A FR+ + I RI+YYANSSNYGT ++DN+++ QG + + L+ + D G + G Sbjct: 166 ATFRSPLAGGIARIEYYANSSNYGTIHVDNLRILQGTTRGKGNTALAAVQTDAGNAVQDG 225 Query: 185 EDYSLDVPYFMDSVQLTATASSPNIASLTINGIPAVSGQPAGEVALAEGLTTIPVVVTAE 244 + LDVP ++++ ++ ++ +TING A G + + L+EG TI +VVTAE Sbjct: 226 TGWRLDVPAGTQTLRVATKPAADVVSGITINGATAQPGVLSDPITLSEGTNTISIVVTAE 285 Query: 245 DGLTTHTVNVIINRTPAALDSTLQNLQVAASGGGGXXXXXXFSYNRDSYTVNVADSVYGL 304 +G T+ T + + R A D+TL++L V G F Y + + Sbjct: 286 NG-TSQTHTLTVQRALLAADATLRSLTV-----GSATLSPDFGSAVQDYQITTEPGATEI 339 Query: 305 TVTPVAGAPGTEIRVNGNVVGSTQTSAEIPLRASSSE-ITVTTASADGTDYRSYSITVN 362 TVTP + P +EI VNG+ V Q A + ++ + I ++ +SADGT +YS+T+ Sbjct: 340 TVTPTSTGPSSEISVNGHTV---QNGAVTTVAVTNGQVIPISVSSADGTGLVTYSLTIK 395 >B1D9D3.1 B1D9D3_9BACL S-layer domain protein Length = 565 Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 113/327 (34%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 629 QSLEIQTVVGAVVLPGGMLTAEQAAQNAAVVLRISAADAGSLPAEITAASAGRPVVKLSL 688 + +EI T G V +P ++ A Q ++ LRI D SLPA RPV++L Sbjct: 249 RQVEINTPFGTVTIPDHVIPAGQLGSAQSLTLRIKQVDPASLPASAQQQVGSRPVLELHF 308 Query: 689 SIGGKEISWQKSPAQVQVSIPYRLTAAELLNSDYLTVRYIDEAGVSHPVASGKYDPVSAA 748 + GK I W+ A VQV +PY L+A E +N+D + YID G V +G++ Sbjct: 309 ELDGKAIEWKNEQAPVQVVLPYTLSATEKVNADLIVAAYIDSNGKLQIVPTGRFHAEDGE 368 Query: 749 VTFTARHFSTYAVVMNRISFNDLDASHWAKKPVEVLAAKGIVNGVSAGSYAPAAQISRAD 808 ++F+ HFS Y +V + +F D +S WA++ +E LA +GI+NG +A +++P A I+RAD Sbjct: 369 MSFSTTHFSLYTIVNSSKAFKDTTSS-WARQDIEALAIRGIINGTTADTFSPNANITRAD 427 Query: 809 YAVMLVRAFGLDGSAEAAATRFTDVLPGSYYYEAVNTAKALGIASGNTDGSFNPAGIITR 868 + +LV L AE+ F DV +YYY+AV TA+ALG+ASG+ DG FNP I+R Sbjct: 428 FTKLLVGV--LAKHAESTGAGFKDVTSKAYYYDAVMTAQALGLASGSGDGKFNPGASISR 485 Query: 869 QEMIVMTDRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRMLQIGWLQG 928 Q+M+V+ DRA V +++ G + G Sbjct: 486 QDMMVLLDRAF--------TAAGHPLKETASLPGYKDAAKVAAYAKPSVEKLIASGIING 537 Query: 929 NSGLIQPEGTASRAEAAVLLYRICTEL 955 ++G + P+ +RAEAA +L+ + EL Sbjct: 538 SNGYLTPQNNLTRAEAAKVLHLLYNEL 564 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.128 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,439,783,090 Number of extensions: 171635108 Number of successful extensions: 473717 Number of sequences better than 1.0e-05: 711 Number of HSP's gapped: 473928 Number of HSP's successfully gapped: 828 Length of query: 955 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 809 Effective length of database: 1,685,228,013 Effective search space: 1363349462517 Effective search space used: 1363349462517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 136 (57.0 bits)