BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0003.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D597.1 B1D597_9BACL Binding-protein-dependent transport system... 521 e-146 B3KAH4.1 B3KAH4_9BACI Binding-protein-dependent transport system... 392 e-107 B1DB01.1 B1DB01_9BACL Binding-protein-dependent transport system... 292 2e-77 Q5WL26.1 Q5WL26_BACSK Lactose ABC transporter permease 263 9e-69 B9MNB3.1 B9MNB3_ANATD Binding-protein-dependent transport system... 262 3e-68 >B1D597.1 B1D597_9BACL Binding-protein-dependent transport systems inner membrane component Length = 282 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 248/282 (87%), Positives = 264/282 (93%) Query: 1 MEATRSSKRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEMSSANLFPKIPHWANFSDGW 60 M+A R RF H SLL++SLIMMYPIFWW+GASLKTNEEM SANLFPK+PHWANFSDGW Sbjct: 1 MKAARLYNRFFNHASLLIISLIMMYPIFWWVGASLKTNEEMRSANLFPKVPHWANFSDGW 60 Query: 61 VSVPNFTFAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPT 120 VS PNFTF HFY+NTFEL+ G+LFTSVVACSLVAFAF+RLDFPLR WFAIMLVTLMLPT Sbjct: 61 VSTPNFTFTHFYVNTFELIIGILFTSVVACSLVAFAFARLDFPLRKMWFAIMLVTLMLPT 120 Query: 121 QVTIVPQYVMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKID 180 QVT+VPQYVMFSKWGWINTYLPFYIPHL AGGIGGPFFIYLLVQFMRSVPKELDEAAKID Sbjct: 121 QVTVVPQYVMFSKWGWINTYLPFYIPHLLAGGIGGPFFIYLLVQFMRSVPKELDEAAKID 180 Query: 181 GCSWFSIYWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDS 240 GCSWF IYWRIM+PLVKPALVTV IYCFLWNWDDFFGQMLYIN+I+ YTINLALKLFIDS Sbjct: 181 GCSWFGIYWRIMIPLVKPALVTVMIYCFLWNWDDFFGQMLYINSINHYTINLALKLFIDS 240 Query: 241 QGSVPWGQMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 QGSVPWGQ+LAMSL SIVPSV+IFFLAQ+HFVEGMSAGALKG Sbjct: 241 QGSVPWGQLLAMSLCSIVPSVVIFFLAQRHFVEGMSAGALKG 282 >B3KAH4.1 B3KAH4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 171/278 (61%), Positives = 228/278 (82%) Query: 5 RSSKRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEMSSANLFPKIPHWANFSDGWVSVP 64 R + H L++ SLIM+YP+ WW+GASLKTN+E+SS ++FP +P W+N+++GW SVP Sbjct: 4 RKWNPVIRHSVLIMFSLIMVYPVIWWIGASLKTNQELSSPSIFPSVPQWSNYTNGWNSVP 63 Query: 65 NFTFAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTI 124 FTF FYLNTF L+ V+ +V++C+LVAF F+RLDFPLR FWF+++++TLMLP QV I Sbjct: 64 GFTFTDFYLNTFYLITAVIIVTVISCTLVAFGFARLDFPLRGFWFSLLMLTLMLPGQVLI 123 Query: 125 VPQYVMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSW 184 +PQY MF ++GW+NTYLPF +PH AGG GG FF++LLVQF+R +P+ELDE+AKIDGCSW Sbjct: 124 IPQYAMFHQFGWVNTYLPFIVPHALAGGAGGTFFVFLLVQFIRGIPRELDESAKIDGCSW 183 Query: 185 FSIYWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSV 244 F IYWRI++PL+KP++VTV I+CFLWNWDDF G +LYIN++DKYT+ LAL++ DSQG Sbjct: 184 FGIYWRIVMPLMKPSIVTVIIFCFLWNWDDFLGHLLYINSVDKYTVGLALRMINDSQGGA 243 Query: 245 PWGQMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 WGQ+LAMSLVSI+P+ L+F AQK+FVEG++ LKG Sbjct: 244 EWGQLLAMSLVSILPATLLFIFAQKYFVEGVATTGLKG 281 >B1DB01.1 B1DB01_9BACL Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/282 (50%), Positives = 210/282 (74%), Gaps = 4/282 (1%) Query: 1 MEATRSSKRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEMSSANLFPKIPHWANFSDGW 60 M T + + +H+ L+ SL+M+YP+ WW+GASLKT EMSS +++P P W N++ GW Sbjct: 1 MNKTLRNYKVTSHLLLIAFSLLMLYPVIWWVGASLKTTAEMSSPSIWPSTPLWENYTKGW 60 Query: 61 VSVPNFTFAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPT 120 P FTF F+ NT + + V+ ++VA+ F+RL+F R F+I+L+T+MLP Sbjct: 61 QFSPEFTFGRFFGNTLLMEFWNVLGGVLTSAIVAYGFARLNFKFRGALFSILLLTMMLPG 120 Query: 121 QVTIVPQYVMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKID 180 QVTIVPQY++++K +++Y+P +PH F GG FFI+LLVQF+R +P+ELDEAAKID Sbjct: 121 QVTIVPQYILYNKMQLMDSYIPLVLPHFFGGGA---FFIFLLVQFIRGLPRELDEAAKID 177 Query: 181 GCSWFSIYWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDS 240 G S + I++RI+LPL+KPALVTVAI+ F+W+WDDFF QMLY+N++ K+T+ LAL++++D Sbjct: 178 GASVYGIFYRIVLPLIKPALVTVAIFTFIWSWDDFFAQMLYLNSVGKFTVGLALRMYVD- 236 Query: 241 QGSVPWGQMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 Q + WG++LAMSL+S++PSV++FF AQK FVEG++ LKG Sbjct: 237 QFEIQWGRLLAMSLLSVMPSVVLFFFAQKQFVEGIATTGLKG 278 >Q5WL26.1 Q5WL26_BACSK Lactose ABC transporter permease Length = 280 Score = 263 bits (673), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 123/283 (43%), Positives = 189/283 (66%), Gaps = 5/283 (1%) Query: 1 MEATRSSKRFVTHISLLVVSLIMMYPIFWWLGASLKTNEEM--SSANLFPKIPHWANFSD 58 M+ R K F+ H ++L+ M+YP+ W + +S+K E+ +A+L P HW N+ + Sbjct: 1 MQTKRRFKTFLYHFTVLLFGFFMLYPVLWMISSSVKPPAEIFQQAASLLPSAFHWDNYVE 60 Query: 59 GWVSVPNFTFAHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLML 118 GW + F + N+ + + + ++++ S VAF F+RL FPL+N FA ++ TLML Sbjct: 61 GWKGFGSVGFDQIFRNSLFVSSMNIIGALISSSFVAFGFARLKFPLKNILFACLIGTLML 120 Query: 119 PTQVTIVPQYVMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAK 178 P Q+T++PQY++F+ +GW+NT+LP +P F GG PFFI+L+VQF+R +P+ELDEAA Sbjct: 121 PMQITLIPQYILFNYFGWVNTFLPLIVPA-FVGGT--PFFIFLMVQFIRGIPRELDEAAV 177 Query: 179 IDGCSWFSIYWRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFI 238 IDGCS I+WRI++PL KP LVTV I+ FLW+WDDFFG ++Y+N YT+ L L F+ Sbjct: 178 IDGCSTLGIFWRIIMPLCKPVLVTVTIFAFLWSWDDFFGGLIYLNDPSLYTVGLGLASFL 237 Query: 239 DSQGSVPWGQMLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALK 281 DS + WG +LAM+ +S+VP ++F QK+ V+G++ +K Sbjct: 238 DSTSASSWGPLLAMATLSLVPQFIVFLFFQKYLVQGIATTGIK 280 >B9MNB3.1 B9MNB3_ANATD Binding-protein-dependent transport systems inner membrane component Length = 285 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 114/274 (41%), Positives = 195/274 (71%), Gaps = 4/274 (1%) Query: 10 FVTHISLLVVSLIMMYPIFWWLGASLKTNEEM-SSANLFPKIPHWANFSDGWVSVPNFTF 68 F+T+ L++ L M+YP+ W + A+ K+N+E+ S +LFP+ +F GW +TF Sbjct: 15 FITYAFLILFGLFMIYPLLWVVSAAFKSNDEIFKSLSLFPQKIVTDSFIKGWQGTGQYTF 74 Query: 69 AHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQY 128 F+ N LV V+F ++++ +LVA+ F+R +FPL+ +F I++ TLMLP V ++P+Y Sbjct: 75 GRFFANNLILVIPVVFFTIISSTLVAYGFARFNFPLKRLFFVILISTLMLPDSVNLIPRY 134 Query: 129 VMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIY 188 ++F+ +GW+++Y PF IP +FA PFF+++++QFMR +P+E++EAA IDGC+ F I Sbjct: 135 ILFNAFGWVDSYKPFIIPSMFAST---PFFVFMMIQFMRGLPREIEEAAIIDGCNSFQIL 191 Query: 189 WRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQ 248 RI PL K A++++ I+ F+W W+DF G ++YIN+++KYTI L L++ +DS ++ W Q Sbjct: 192 LRITGPLCKTAMISMGIFQFIWTWNDFLGPLIYINSVEKYTIALGLRMCVDSAAAIAWNQ 251 Query: 249 MLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 ++AM++++++P ++IFF AQK+FVEG++ +KG Sbjct: 252 IMAMTVIAMLPCIIIFFAAQKYFVEGIATSGIKG 285 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,618,772,040 Number of extensions: 65932950 Number of successful extensions: 249632 Number of sequences better than 1.0e-05: 6199 Number of HSP's gapped: 239057 Number of HSP's successfully gapped: 6199 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)