BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0002.p (352 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D598.1 B1D598_9BACL Binding-protein-dependent transport system... 523 e-147 B3KAH3.1 B3KAH3_9BACI Binding-protein-dependent transport system... 366 2e-99 B1DB00.1 B1DB00_9BACL Binding-protein-dependent transport system... 360 1e-97 B3K420.1 B3K420_9BACI Binding-protein-dependent transport system... 336 2e-90 Q92T64.1 Q92T64_RHIME Putative amino acid or peptide ABC transpo... 335 5e-90 >B1D598.1 B1D598_9BACL Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/319 (81%), Positives = 277/319 (86%), Gaps = 3/319 (0%) Query: 34 MNNAAVKQAPAGSLKTVPSSKKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSF 93 MNNAAV A L+ V K R+KRWE+P+ GYLFLSPWLIGF LLTLGPMIMSLYYSF Sbjct: 1 MNNAAVNSG-AAQLEQV--KKIRSKRWETPITGYLFLSPWLIGFLLLTLGPMIMSLYYSF 57 Query: 94 TDYSLLTAPKWTGLANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKI 153 TDYSLL AP W G NY +IFT DD+FP SL+ITITFVL TVPLRL+FAL IAMLLNRK+ Sbjct: 58 TDYSLLEAPNWVGFDNYKQIFTNDDVFPKSLKITITFVLFTVPLRLLFALCIAMLLNRKM 117 Query: 154 KGISFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGT 213 KG+SFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGT Sbjct: 118 KGMSFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGT 177 Query: 214 LILLMVWQFGSSMIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQ 273 LI+LMVWQFGSSMIIFLAGLKQIP DLYEASSVDGAGKFRQF S+TLPMLSPII+FNA+Q Sbjct: 178 LIILMVWQFGSSMIIFLAGLKQIPTDLYEASSVDGAGKFRQFISVTLPMLSPIILFNAVQ 237 Query: 274 TMINTFQMFTQAFVITGGGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTA 333 TMINTFQMFTQAFVIT GGPVKST+VYVMYLYEEAFTKFHMGY F Sbjct: 238 TMINTFQMFTQAFVITNGGPVKSTYVYVMYLYEEAFTKFHMGYASALAWILLILIGLFAG 297 Query: 334 VLFGTSKYWVFYESQGGKK 352 VLFGTSKYWVFYE+QGGKK Sbjct: 298 VLFGTSKYWVFYENQGGKK 316 >B3KAH3.1 B3KAH3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 317 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 183/305 (60%), Positives = 225/305 (73%), Gaps = 3/305 (0%) Query: 50 VPSSKKR-AKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLA 108 +P KK KRW+SPLAGYLF+SPWLIGF LT PM++SLYYSFT+Y+L+ +W GL Sbjct: 11 IPVRKKPFRKRWDSPLAGYLFISPWLIGFLALTAYPMLLSLYYSFTNYTLMKPIEWVGLD 70 Query: 109 NYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSL 168 NY RI T DD F SL++T +VL +VPL+L+ AL +A+LL + ++GIS YRT +YFPSL Sbjct: 71 NYERIITADDKFAQSLKLTFYYVLASVPLKLIAALMVALLLKKAVRGISVYRTAIYFPSL 130 Query: 169 IGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGTLILLMVWQFGSSMII 228 IG SIAVS+LWKNIF +GF N L FGI G W+ +P AL +LI L VWQFGSSM+I Sbjct: 131 IGASIAVSLLWKNIFGVDGFFNQVLGFFGIPGTGWVTNPDTALWSLIGLSVWQFGSSMVI 190 Query: 229 FLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVI 288 FLAGLKQIP DLYEAS+VDGAGK +QFF ITLPMLSP + FN I +IN+FQMFT A+VI Sbjct: 191 FLAGLKQIPNDLYEASAVDGAGKLKQFFKITLPMLSPTLFFNLIMGVINSFQMFTPAYVI 250 Query: 289 TGGGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFY--E 346 TGGGP+ ST+VY +YLYE AF+++ +GY ++ TSKYWVFY E Sbjct: 251 TGGGPMNSTYVYALYLYERAFSRYQLGYSSSLAWIMLILIVAAAVIINLTSKYWVFYESE 310 Query: 347 SQGGK 351 SQGGK Sbjct: 311 SQGGK 315 >B1DB00.1 B1DB00_9BACL Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/316 (54%), Positives = 228/316 (72%), Gaps = 1/316 (0%) Query: 37 AAVKQAPAGSLKTVPSSKKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDY 96 A PA + K + K + ++ LAGY+F+SPWLIGF LLT P+I S Y SFT+Y Sbjct: 3 AEAMNKPAAATKLRLTKKLKGTN-DNNLAGYIFISPWLIGFLLLTAWPIIQSFYLSFTEY 61 Query: 97 SLLTAPKWTGLANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGI 156 SLL AP WTG NY IFT D+ F +SL++T FVL +VPL+L F+L +AM+LN+ +KG+ Sbjct: 62 SLLEAPTWTGTDNYANIFTSDNDFKTSLKVTFIFVLFSVPLKLFFSLMVAMMLNKNVKGM 121 Query: 157 SFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGTLIL 216 + YRT +YFPSLIG SIAV+ LW+N+F+ NG+ N L+ FGI+G WI +P +LGTLIL Sbjct: 122 NLYRTAIYFPSLIGGSIAVAALWRNMFNLNGYFNHVLSWFGIQGVGWITNPHTSLGTLIL 181 Query: 217 LMVWQFGSSMIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMI 276 L WQFGS+M+IFLAGLKQIPG+LYE++SVDGA K R+FF ITLPMLSP++ FN + +I Sbjct: 182 LNTWQFGSTMVIFLAGLKQIPGELYESASVDGASKLRKFFHITLPMLSPVMFFNLVLGII 241 Query: 277 NTFQMFTQAFVITGGGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLF 336 +FQMFT AF++T GGP+ ST++Y ++LYE+AF + MGY TA+ F Sbjct: 242 GSFQMFTSAFIVTQGGPINSTYMYALFLYEKAFKHYQMGYASALAWILLVIVALMTAINF 301 Query: 337 GTSKYWVFYESQGGKK 352 S+YWVFYE+ GGK+ Sbjct: 302 LVSRYWVFYETDGGKQ 317 >B3K420.1 B3K420_9BACI Binding-protein-dependent transport systems inner membrane component Length = 304 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 173/303 (57%), Positives = 216/303 (71%), Gaps = 9/303 (2%) Query: 58 KRWESPLAG------YLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLANYT 111 ++ PL G YLFL PWLIGFF LTLGPMI SLY S T ++LL++P WTGL+NY Sbjct: 2 RKLSKPLYGQQNKTAYLFLLPWLIGFFCLTLGPMIASLYLSMTKFNLLSSPTWTGLSNYV 61 Query: 112 RIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSLIGT 171 +IFTEDD F SL +T +V L+VPLRL FAL IAM LN+ I+G+ YRT+ Y PSL+G Sbjct: 62 QIFTEDDTFQRSLWLTFYYVFLSVPLRLAFALLIAMALNKGIRGLGIYRTVYYIPSLLGG 121 Query: 172 SIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGTLILLMVWQFGSSMIIFLA 231 S+A++I+W+ IF +G +N FL FGI GP+WIA P Y + T+I L VWQFGS+M+IFLA Sbjct: 122 SVAIAIVWRQIFDGSGLVNQFLGWFGITGPSWIAHPDYVVYTIITLSVWQFGSAMVIFLA 181 Query: 232 GLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVITG- 290 GLKQIP DLYEAS VDGAGK RQFF ITLPMLSP+I FN I +MIN+FQ FT A+VI Sbjct: 182 GLKQIPTDLYEASGVDGAGKIRQFFGITLPMLSPVIFFNLIMSMINSFQAFTPAYVIGDG 241 Query: 291 -GGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFY-ESQ 348 GGP+ +T Y +YLY + F+ F MGY FT ++F TSK+WVFY ++Q Sbjct: 242 RGGPLDATMFYTLYLYLKGFSFFDMGYASALAWIMLVIIGVFTGIVFLTSKFWVFYGDNQ 301 Query: 349 GGK 351 G+ Sbjct: 302 EGR 304 >Q92T64.1 Q92T64_RHIME Putative amino acid or peptide ABC transporter, permease component Length = 315 Score = 335 bits (858), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 163/317 (51%), Positives = 224/317 (70%), Gaps = 5/317 (1%) Query: 34 MNNAAVKQAPAGSLKTVPSSKKRAKR-WESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYS 92 M + AV S + P+++ R R W S AGY+FL PWLIGFF LTLGP I SLY S Sbjct: 1 MQDTAVAVGTGASSR--PAAQGRLARIWASHGAGYMFLLPWLIGFFGLTLGPAIASLYLS 58 Query: 93 FTDYSLLTAPKWTGLANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRK 152 FT++ L+ AP+W G ANY RI T D F +++++T +V+L+VP +L FAL +A+LL+R Sbjct: 59 FTNFDLIRAPEWIGTANYARIATADPKFAAAVKVTFLYVVLSVPFKLAFALLVAILLDRG 118 Query: 153 IKGISFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALG 212 ++G++ YR + Y PSL+G S+A+++LW+ +F+ +G IN LA FGI+GP+WI+ P Y++ Sbjct: 119 VRGLTVYRAIFYLPSLLGGSVAIAVLWRQLFAGDGLINSLLAQFGIEGPSWISHPDYSIW 178 Query: 213 TLILLMVWQFGSSMIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAI 272 TL++L VWQFGS MIIFLAGL+QIP D+YEA+S+DGA KFRQF+ ITLP+L+P+I FNA+ Sbjct: 179 TLVVLSVWQFGSPMIIFLAGLRQIPTDMYEAASLDGASKFRQFYKITLPLLTPVIFFNAV 238 Query: 273 QTMINTFQMFTQAFVITG--GGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXX 330 I+ F+ FT AF+I+G GGP+ ST Y +YLY+EAF F MGY Sbjct: 239 VQTIDAFKAFTPAFIISGGTGGPINSTLFYTLYLYQEAFGNFRMGYASALAWILVLIIGL 298 Query: 331 FTAVLFGTSKYWVFYES 347 FTA F TS+YWV Y+ Sbjct: 299 FTAFSFLTSRYWVHYDD 315 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,005,658,042 Number of extensions: 78552474 Number of successful extensions: 251173 Number of sequences better than 1.0e-05: 5935 Number of HSP's gapped: 241344 Number of HSP's successfully gapped: 5953 Length of query: 352 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 215 Effective length of database: 1,770,017,148 Effective search space: 380553686820 Effective search space used: 380553686820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)