BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0012.p (532 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K472.1 B3K472_9BACI FAD dependent oxidoreductase 675 0.0 C0ZGP3.1 C0ZGP3_BREBN Putative uncharacterized protein 645 0.0 B3KFT9.1 B3KFT9_9BACI FAD dependent oxidoreductase 629 e-178 C0V1V4.1 C0V1V4_9BACT Glucose inhibited division protein A 584 e-165 C1XVN9.1 C1XVN9_9DEIN Glucose inhibited division protein A 578 e-163 >B3K472.1 B3K472_9BACI FAD dependent oxidoreductase Length = 524 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/524 (62%), Positives = 396/524 (75%), Gaps = 1/524 (0%) Query: 10 MTKQIQADVIIIXXXXXXXXXXXXXXXXXRSVVMTEAYEWIGGQLTSQVVPPDENRWIEQ 69 M I+AD+II+ + VVMTE +W+GGQ+TSQ VPPDE+ WIEQ Sbjct: 1 MENHIEADIIILGGGLGGCAAALAAAKAGKRVVMTEESDWLGGQITSQGVPPDEHPWIEQ 60 Query: 70 FGCTASYRTYRNAVRDYYRRFFPLTEQARARAGFNPGNAWVSRLSHEPRTALAVLRDMLA 129 FGCTASYR +RN +RDYY+ FPL ++R NPG+A VS ++HEPR ALAVL+ MLA Sbjct: 61 FGCTASYREFRNRIRDYYKELFPLRAESRQERYLNPGSALVSGIAHEPRAALAVLQGMLA 120 Query: 130 PYVHSGRLQIWTGYKPVQAETDGDEVISVTV-CGQDGDRLVLTGSYFLDATEEGDVLPLA 188 PYVHSGRL I T + ++AE+ GD+V SV + + GD + LTG++FLDATEEGD+LPLA Sbjct: 121 PYVHSGRLTILTEHALMEAESGGDQVTSVRLRDSRSGDIVKLTGAFFLDATEEGDLLPLA 180 Query: 189 GVEYVTGAESVAETGERHALAGPANPRDIQAFTHCLALDYNEGEDYTIAKPREYDFWKNY 248 G+EYVTG+ES ETGE HAL+GPA+ D+QAFT C A+DY EG+D+TI KP YDFWK+Y Sbjct: 181 GIEYVTGSESAEETGEPHALSGPADRADMQAFTWCFAMDYREGKDHTIPKPDRYDFWKSY 240 Query: 249 QADFWPAPQLSWTVPSPSTLAPVTYVLLPEEGANPLFTYRRLADRNNFQPGTYKTDLSVV 308 +ADFWP LSWT P TL PVTY L P+ + L+ YR++ + +F+ G + + ++VV Sbjct: 241 RADFWPDAMLSWTGLVPHTLEPVTYSLFPDGRSFSLWKYRQILNPEHFEGGLFDSSVTVV 300 Query: 309 NWPQNDYWLGPIVDVAPEERHRHLERAKQLSLSLLYWMQTEAPRKDGGIGYPGLRPRPDA 368 NWPQNDYWLG I+DV PEER RHLE ++QLSLSLLYWMQTEAPR DGG GYPGLR RPD Sbjct: 301 NWPQNDYWLGSIIDVGPEERERHLEESRQLSLSLLYWMQTEAPRPDGGKGYPGLRLRPDV 360 Query: 369 TGAPHGLAQAPYIREGRRIRAEYTILEQHLSPAGRPGGKAEKYPDTVGIGSYRIDLHPST 428 G GLA+APYIRE RRIRAE+T+ EQH++ RP G+AE + D+VGIG YRIDLHPST Sbjct: 361 MGTKDGLAKAPYIRESRRIRAEFTVKEQHIAAECRPDGRAETFHDSVGIGCYRIDLHPST 420 Query: 429 ALRTFIDIPSLPFQIPLGALIPVRVNNLIAAAKNIGTTHITNGCYRLHPVEWNIGEAAGM 488 LRT+IDI SLPFQIP+G+LIPVRV N++AA KNIGTTHITNGCYRLHPVEWNIGEAAG Sbjct: 421 GLRTYIDISSLPFQIPMGSLIPVRVANVLAACKNIGTTHITNGCYRLHPVEWNIGEAAGF 480 Query: 489 LAAYCLDNGTTPRGVRNSPQQLSSFQTRLRNNGFELEWPSIGAV 532 LAAYC+++G PR VRN+P L +FQ RL G E WPSI V Sbjct: 481 LAAYCIEHGLKPREVRNTPDHLEAFQRRLTEQGIERSWPSIHVV 524 >C0ZGP3.1 C0ZGP3_BREBN Putative uncharacterized protein Length = 524 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/523 (60%), Positives = 375/523 (71%), Gaps = 2/523 (0%) Query: 12 KQIQADVIIIXXXXXXXXXXXXXXXXXRSVVMTEAYEWIGGQLTSQVVPPDENRWIEQFG 71 +++ ADV+II +SV+MTE +WIGGQ TSQ VPPDE+ WIEQFG Sbjct: 2 RELHADVVIIGGGTGGCAAALAAAKSGKSVIMTEETDWIGGQFTSQAVPPDEHPWIEQFG 61 Query: 72 CTASYRTYRNAVRDYYRRFFPLTEQARARAGFNPGNAWVSRLSHEPRTALAVLRDMLAPY 131 CT SYRT+R++VRDYYR +P+T +AR +PGN VSRL HEP+ ALAV MLAPY Sbjct: 62 CTRSYRTFRDSVRDYYRNHYPMTAEARVIPNLDPGNGSVSRLCHEPKVALAVFYQMLAPY 121 Query: 132 VHSGRLQIWTGYKPVQAETDGDEVISVTVCGQDG-DRLVLTGSYFLDATEEGDVLPLAGV 190 ++SGRL I T +K GD V+S+TV Q D L YFLDATE GDVLP AGV Sbjct: 122 INSGRLTILTNHKLHAVRMAGDNVLSITVEDQKHHDFHELVAPYFLDATECGDVLPQAGV 181 Query: 191 EYVTGAESVAETGERHALAGPANPRDIQAFTHCLALDYNEGEDYTIAKPREYDFWKNYQA 250 EYV GAESV +TGE +A+ GP P DIQAFT+C A+DY EGED+TIAKP YDFW+NY+A Sbjct: 182 EYVLGAESVDQTGEPNAVVGPPQPNDIQAFTYCFAMDYLEGEDHTIAKPETYDFWRNYKA 241 Query: 251 DFWPAPQLSWTVPSP-STLAPVTYVLLPEEGANPLFTYRRLADRNNFQPGTYKTDLSVVN 309 DFWP LSWT +P +T V Y L P PLFTYR++AD NFQ G YK+ ++ VN Sbjct: 242 DFWPDKLLSWTGSNPRNTAESVRYELFPGTKYFPLFTYRQIADPKNFQTGLYKSGVTTVN 301 Query: 310 WPQNDYWLGPIVDVAPEERHRHLERAKQLSLSLLYWMQTEAPRKDGGIGYPGLRPRPDAT 369 WPQNDYWLG I+DV EER RHL KQLSLSLLYWMQTEAPR DGG GYPGLR R D Sbjct: 302 WPQNDYWLGSIIDVPEEERQRHLYGGKQLSLSLLYWMQTEAPRPDGGQGYPGLRLRKDVM 361 Query: 370 GAPHGLAQAPYIREGRRIRAEYTILEQHLSPAGRPGGKAEKYPDTVGIGSYRIDLHPSTA 429 G GLA PYIRE RRI+AE+T+LEQH+S R GKAE + D+VG+GSYRIDLHPSTA Sbjct: 362 GTEDGLAMYPYIRESRRIKAEFTVLEQHVSAFVRKTGKAEAFEDSVGVGSYRIDLHPSTA 421 Query: 430 LRTFIDIPSLPFQIPLGALIPVRVNNLIAAAKNIGTTHITNGCYRLHPVEWNIGEAAGML 489 R ++D+ + PFQIPLG+LIPVRVNNL+ A KN+G THITNGC+RLHPVEWN+GE AG L Sbjct: 422 NRNYVDVSTYPFQIPLGSLIPVRVNNLLPAGKNLGVTHITNGCFRLHPVEWNVGEVAGYL 481 Query: 490 AAYCLDNGTTPRGVRNSPQQLSSFQTRLRNNGFELEWPSIGAV 532 AYCL +G TPR VRN+P +L FQ L G E WP++ AV Sbjct: 482 TAYCLQHGLTPRAVRNTPDELKKFQAFLYAEGVEYFWPTMYAV 524 >B3KFT9.1 B3KFT9_9BACI FAD dependent oxidoreductase Length = 524 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/524 (57%), Positives = 374/524 (71%), Gaps = 1/524 (0%) Query: 10 MTKQIQADVIIIXXXXXXXXXXXXXXXXXRSVVMTEAYEWIGGQLTSQVVPPDENRWIEQ 69 M +++QAD++I+ ++V+MTE WIGGQLTSQ VPPDE+ WIE Sbjct: 1 MIREMQADIVILGGGTGGTAAALAAAKSGKTVIMTEETTWIGGQLTSQAVPPDEHPWIES 60 Query: 70 FGCTASYRTYRNAVRDYYRRFFPLTEQARARAGFNPGNAWVSRLSHEPRTALAVLRDMLA 129 FGCT SYR +R VR YYR +FP+T +AR+ NPG+ VSRL HEPRTALAVL MLA Sbjct: 61 FGCTRSYRQFREGVRQYYRDYFPMTPKARSNVQLNPGSGIVSRLCHEPRTALAVLHQMLA 120 Query: 130 PYVHSGRLQIWTGYKPVQAETDGDEVISVTVCG-QDGDRLVLTGSYFLDATEEGDVLPLA 188 PY+HSGRL I Y A+ GD V SVTV + D++VL +F+DATE GD+LPLA Sbjct: 121 PYIHSGRLTILYQYAAESADVSGDRVDSVTVRHLETEDQIVLRAPFFVDATELGDLLPLA 180 Query: 189 GVEYVTGAESVAETGERHALAGPANPRDIQAFTHCLALDYNEGEDYTIAKPREYDFWKNY 248 G+EYVTGAES A+TGE HA+ G P+D+Q FT+C A+DY EGED+TI KP YDFW+ Y Sbjct: 181 GIEYVTGAESKAQTGEPHAVDGDPLPQDMQGFTYCFAVDYLEGEDHTIEKPALYDFWREY 240 Query: 249 QADFWPAPQLSWTVPSPSTLAPVTYVLLPEEGANPLFTYRRLADRNNFQPGTYKTDLSVV 308 + DFWP LS T PST P+ Y + P G PL+ YR++ D +F GT+ + +S+V Sbjct: 241 KPDFWPDKLLSLTAVKPSTNEPIEYEIFPGHGKFPLYQYRQILDPKHFAEGTFDSSVSLV 300 Query: 309 NWPQNDYWLGPIVDVAPEERHRHLERAKQLSLSLLYWMQTEAPRKDGGIGYPGLRPRPDA 368 NWPQNDYWLG I+DV EE H+++AKQLSLSLLYW+QTE PR DGG GYPGLR RPD Sbjct: 301 NWPQNDYWLGSIIDVPKEEADHHIDQAKQLSLSLLYWLQTEVPRPDGGQGYPGLRLRPDV 360 Query: 369 TGAPHGLAQAPYIREGRRIRAEYTILEQHLSPAGRPGGKAEKYPDTVGIGSYRIDLHPST 428 G G+A PYIRE RRI+AE+T+LEQH++ RP G AE + D+VGIG YRIDLHPST Sbjct: 361 VGTEDGMAMYPYIRESRRIQAEFTVLEQHVATESRPDGVAETFHDSVGIGCYRIDLHPST 420 Query: 429 ALRTFIDIPSLPFQIPLGALIPVRVNNLIAAAKNIGTTHITNGCYRLHPVEWNIGEAAGM 488 R +IDI SLPFQIPLG+LIP R+ N++AA+KNIG THITNGCYRLHPVEWNIGEAAG Sbjct: 421 GERPYIDISSLPFQIPLGSLIPKRIKNVLAASKNIGVTHITNGCYRLHPVEWNIGEAAGY 480 Query: 489 LAAYCLDNGTTPRGVRNSPQQLSSFQTRLRNNGFELEWPSIGAV 532 ++CLD+ P VRN +L+SFQ +L + G EL WP++ V Sbjct: 481 CISHCLDHDILPTDVRNDEDRLASFQQKLVSEGIELAWPALRPV 524 >C0V1V4.1 C0V1V4_9BACT Glucose inhibited division protein A Length = 527 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 294/494 (59%), Positives = 358/494 (72%), Gaps = 8/494 (1%) Query: 39 RSVVMTEAYEWIGGQLTSQVVPPDENRWIEQFGCTASYRTYRNAVRDYYRRFFPLTEQAR 98 R V+++E +W+GGQLTSQ VPPDE+ WIE GCTASYR R +RDYYRR +PL +R Sbjct: 29 RKVLLSEETDWLGGQLTSQGVPPDEHPWIESTGCTASYRLLRTKIRDYYRRNYPLLASSR 88 Query: 99 ARAGFNPGNAWVSRLSHEPRTALAVLRDMLAPYVHSGRLQIWTGYKPVQAETDGDEVISV 158 NPG VS L HEPR ALA + ++LAPY +GRL++ ++PV AE+DGD V SV Sbjct: 89 QDPYLNPGKGNVSALCHEPRVALAAIEELLAPYRATGRLEVLLEHRPVAAESDGDIVRSV 148 Query: 159 TVCGQDG-DRLVLTGSYFLDATEEGDVLPLAGVEYVTGAESVAETGERHALAGPANPRDI 217 T+ +++ + SY LDATE GD+L LAG+E+V GAES A+TGE HAL G NP D Sbjct: 149 TLEALGSQEKVQVHASYILDATELGDILELAGIEHVIGAESQAQTGEPHALEGDPNPLDQ 208 Query: 218 QAFTHCLALDYNEGEDYTIAKPREYDFWKNYQADFWPAPQLSWTVPSPSTLAPVTYVLLP 277 QA T C ALD+ EGED+TI KP EYDFW+ YQA FWP QL WT P TL T+ L Sbjct: 209 QAITWCFALDFIEGEDHTIDKPSEYDFWRRYQASFWPGRQLGWTDVHPETLEVRTHKLFD 268 Query: 278 EEGANPLFTYRRLADRNNFQPGTYKTDLSVVNWPQNDYWLGPIVDVAPEERHRHLERAKQ 337 +G L+ YRR+ R ++ GTY +D+++VNWPQNDYWLGPIV V+P+E+ HL RA+Q Sbjct: 269 PQGNFDLWRYRRIFFRGHYPEGTYPSDITLVNWPQNDYWLGPIVGVSPQEKDIHLHRARQ 328 Query: 338 LSLSLLYWMQTEAPRKDGGIGYPGLRPRPDATGAPHGLAQAPYIREGRRIRAEYTILEQH 397 LSLSLLYWMQTEAPR DGG GYP LR R D G GLA+ Y+RE RR+RAE+T+LE H Sbjct: 329 LSLSLLYWMQTEAPRHDGGYGYPELRLRGDVLGTD-GLAKHMYVRESRRLRAEFTVLEHH 387 Query: 398 LSPAGRPGGK---AEKYPDTVGIGSYRIDLHPSTALRTFIDIPSLPFQIPLGALIPVRVN 454 + R GK AE++PD+VG+GSYRIDLHPST RT+IDI S PFQIPLGALIP+RV Sbjct: 388 VGVEAR--GKLQGAEEFPDSVGVGSYRIDLHPSTGGRTYIDISSYPFQIPLGALIPIRVE 445 Query: 455 NLIAAAKNIGTTHITNGCYRLHPVEWNIGEAAGMLAAYCLDNGTTPRGVRNSPQQLSSFQ 514 N++ A KN+G THITNGCYRLHPVEWNIGEAAG LAAYCL++ TPR VRN Q L+ FQ Sbjct: 446 NVLPACKNLGVTHITNGCYRLHPVEWNIGEAAGALAAYCLEHDLTPRAVRNMQQHLTDFQ 505 Query: 515 TRLRNN-GFELEWP 527 L+N GF+L WP Sbjct: 506 HLLQNKLGFQLAWP 519 >C1XVN9.1 C1XVN9_9DEIN Glucose inhibited division protein A Length = 532 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 293/498 (58%), Positives = 354/498 (71%), Gaps = 11/498 (2%) Query: 39 RSVVMTEAYEWIGGQLTSQVVPPDENRWIEQFGCTASYRTYRNAVRDYYRRFFPLTEQAR 98 ++V+MTE +WIGGQLTSQ VPPDE WIE+ GCTA+YR +R VRD+YRR +PL +++ Sbjct: 28 KTVLMTEETDWIGGQLTSQAVPPDEGLWIEELGCTATYRQFREGVRDFYRRHYPLRPESK 87 Query: 99 ARAGFNPGNAWVSRLSHEPRTALAVLRDMLAPYVHSGRLQIWTGYKPVQAETDGDEVISV 158 A NPG VS L HEPR ALAVL MLAPY +L++W +PVQ +GD V +V Sbjct: 88 ADPRLNPGAGNVSLLCHEPRVALAVLEAMLAPYRADRQLEVWLNTRPVQVHVEGDRVQAV 147 Query: 159 TVCG-QDGDRLVLTGSYFLDATEEGDVLPLAGVEYVTGAESVAETGERHALAGPANPRDI 217 V + G+R L Y LDATE G +L L VE+V GAE AETGE HAL ANP + Sbjct: 148 VVEDTRSGERCALLAPYILDATETGQLLELGRVEHVVGAEGQAETGEPHALP-QANPLNQ 206 Query: 218 QAFTHCLALDYNEGEDYTIAKPREYDFWKNYQADFWPAPQLSWTVPSPSTLAPVTY---- 273 QA + C A+DY EGED+TI KP YDFW+NYQA FWP QLSW + P T V Sbjct: 207 QAVSWCFAMDYIEGEDFTIPKPAHYDFWRNYQAPFWPDKQLSWNLCHPITHQAVYRDLFG 266 Query: 274 --VLLPEEGANPLFTYRRLADRNNFQPGTYKTDLSVVNWPQNDYWLGPIVDVAPEERHRH 331 V +P +G L+ +RR+ R ++ G YK+D+++VNWPQNDYWLGPI+ V+ EER RH Sbjct: 267 DPVEIPHKGD--LWHFRRIFARRHYPEGRYKSDITLVNWPQNDYWLGPIIAVSEEERQRH 324 Query: 332 LERAKQLSLSLLYWMQTEAPRKDGGIGYPGLRPRPDATGAPHGLAQAPYIREGRRIRAEY 391 LE A+QLSLSLLYWMQTEAPR DGG GYPGLR R D TG HGLA+A Y+RE RRIRAE+ Sbjct: 325 LEGARQLSLSLLYWMQTEAPRHDGGTGYPGLRLRGDVTGTDHGLAKAVYVRESRRIRAEF 384 Query: 392 TILEQHLSPAGRPGGK-AEKYPDTVGIGSYRIDLHPSTALRTFIDIPSLPFQIPLGALIP 450 T+LEQH+ R + AE + DTVG+G YRIDLHPSTA R ++DI S PFQIPLGALIP Sbjct: 385 TVLEQHVGVEARGNLQGAEIFHDTVGVGQYRIDLHPSTAGRNYVDIASWPFQIPLGALIP 444 Query: 451 VRVNNLIAAAKNIGTTHITNGCYRLHPVEWNIGEAAGMLAAYCLDNGTTPRGVRNSPQQL 510 VRV NL+ A KN+G THITNGCYRLHPVEWNIGEAAG LAA+CL++G P VRN+P+ L Sbjct: 445 VRVQNLLPACKNLGVTHITNGCYRLHPVEWNIGEAAGALAAFCLNHGYAPSQVRNTPRLL 504 Query: 511 SSFQTRLRNNGFELEWPS 528 + FQ + GFEL WP Sbjct: 505 ADFQRLIGEMGFELSWPE 522 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,526,875,860 Number of extensions: 160601423 Number of successful extensions: 324493 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 324289 Number of HSP's successfully gapped: 165 Length of query: 532 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 391 Effective length of database: 1,732,333,088 Effective search space: 677342237408 Effective search space used: 677342237408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)