BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0009.p (341 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KEH7.1 Q9KEH7_BACHD BH0875 protein 320 2e-85 Q65DN0.1 Q65DN0_BACLD YwcH 315 4e-84 C2W6Y6.1 C2W6Y6_BACCE Putative uncharacterized protein 311 5e-83 C3AKQ3.1 C3AKQ3_BACMY Putative uncharacterized protein 304 1e-80 C3BJH8.1 C3BJH8_9BACI Putative uncharacterized protein 303 2e-80 >Q9KEH7.1 Q9KEH7_BACHD BH0875 protein Length = 335 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/329 (47%), Positives = 209/329 (63%), Gaps = 1/329 (0%) Query: 2 MKLSILDQSPVSEGSTPAEALAETASLAIEADRLGYHRFWVSEHHAARGLAGSSPEVLMA 61 MKLS+LDQSP++ GS EAL +T LA + LGYHRFWVSEHH A LAGSSPEVL+A Sbjct: 1 MKLSVLDQSPIAYGSNAKEALRQTTELAKVTEALGYHRFWVSEHHDASTLAGSSPEVLIA 60 Query: 62 HLAAVTSRIRIGSGAVLLPHYSAYKVAENFRVLEALYPGRIDXXXXXXXXXXXXXXXXXQ 121 HLAA T +IR+GSG V+LPHYSAYKVAENF++LEAL+PGRID Q Sbjct: 61 HLAAHTKKIRLGSGGVMLPHYSAYKVAENFKLLEALHPGRIDVGLGRAPGGMPIAKMALQ 120 Query: 122 ENRTGGSAELYELQIQDLLSYLYGAPDQSHRFAGLETSPQISTAPELWXXXXXXXXXXXX 181 E + + Y LQ++D++ YL HRF GL+ +P I T P++W Sbjct: 121 EGKE-QNIHKYPLQVKDVIGYLQDDLPTDHRFHGLKATPLIDTVPDVWLLGSSGGSANVA 179 Query: 182 XXXXTGYAYARFINSAGGSMAVXXXXXXXXXXXXXXXXQALVSVFAVCAETSAEADRLAA 241 TG+A+A FIN GG AV Q V++F +CA+T +AD++A+ Sbjct: 180 AENGTGFAFAHFINGEGGVQAVESYRETFQPSALFDRPQTSVAIFVICADTDEQADQIAS 239 Query: 242 SMDLSLVQLEKGHVSTGTPSVETALGYKYTPYDRFRIEDNRRRMVLGSPDEVRRQFTALM 301 S+DLSL+ LE G +S GTPS+E+AL Y Y+P++R RI +NR+RM++GSP VR+Q L Sbjct: 240 SLDLSLIMLENGQLSKGTPSIESALSYPYSPFERARIRENRKRMIVGSPKAVRQQLVELA 299 Query: 302 EEYQCEEIMFATLMHRYEDKLRSLRLIAE 330 Y+ EE++ T+ HR+ED++RS L+ E Sbjct: 300 RAYETEEVIVVTITHRFEDRIRSYELLGE 328 >Q65DN0.1 Q65DN0_BACLD YwcH Length = 335 Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 163/332 (49%), Positives = 205/332 (61%), Gaps = 5/332 (1%) Query: 1 MMKLSILDQSPVSEGSTPAEALAETASLAIEADRLGYHRFWVSEHHAARGLAGSSPEVLM 60 M+ LSILDQ+PVSEGS P AL T LA A+RLGY RFWVSEHH +R LAGSSPEVL+ Sbjct: 1 MLSLSILDQTPVSEGSKPELALQHTVELAQAAERLGYKRFWVSEHHFSRNLAGSSPEVLI 60 Query: 61 AHLAAVTSRIRIGSGAVLLPHYSAYKVAENFRVLEALYPGRIDXXXXXXXXXXXXXXXXX 120 +LAA T +IRIGSG V+LPHYSAYKVAENFRVLE L PGRID Sbjct: 61 GYLAAKTEKIRIGSGGVMLPHYSAYKVAENFRVLEGLAPGRIDLGVGRAPGGMPIASMAL 120 Query: 121 QENRTGGS--AELYELQIQDLLSYLYGAPDQSHRFAGLETSPQISTAPELWXXXXXXXXX 178 Q GG A+ Y QIQDL++YLY D+ HRF L +P I+TAP +W Sbjct: 121 Q---NGGRRMADQYPEQIQDLVTYLYDQADEHHRFPNLTATPNIATAPAVWLLGSSGESA 177 Query: 179 XXXXXXXTGYAYARFINSAGGSMAVXXXXXXXXXXXXXXXXQALVSVFAVCAETSAEADR 238 Y +A+FIN GG A +V+VF +CAET +A+ Sbjct: 178 RLAAQTGASYTFAQFINGEGGEEAARLYKERFEPSVLGEQPNVIVAVFVICAETEEKAEN 237 Query: 239 LAASMDLSLVQLEKGHVSTGTPSVETALGYKYTPYDRFRIEDNRRRMVLGSPDEVRRQFT 298 LA S+D SL+ E+G V+ G PS+ETAL Y+Y+PY+R R+EDNR+RMV+G+P +V+ Q Sbjct: 238 LAKSLDFSLLANEQGMVTEGFPSLETALSYQYSPYERKRVEDNRKRMVIGTPQQVKEQLL 297 Query: 299 ALMEEYQCEEIMFATLMHRYEDKLRSLRLIAE 330 L Y +EIM T+ H ++D+L S RL+AE Sbjct: 298 ELAGAYGTDEIMAVTITHDFQDRLDSYRLLAE 329 >C2W6Y6.1 C2W6Y6_BACCE Putative uncharacterized protein Length = 339 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 157/334 (47%), Positives = 216/334 (64%), Gaps = 1/334 (0%) Query: 1 MMKLSILDQSPVSEGSTPAEALAETASLAIEADRLGYHRFWVSEHHAARGLAGSSPEVLM 60 M+KLS+LDQSP+S+GST EA + T +LA E ++LG+ RFWVSEHH + LAGSSPEVL+ Sbjct: 1 MIKLSVLDQSPISDGSTATEAFSNTVTLAQEVEKLGFTRFWVSEHHNSVSLAGSSPEVLI 60 Query: 61 AHLAAVTSRIRIGSGAVLLPHYSAYKVAENFRVLEALYPGRIDXXXXXXXXXXXXXXXXX 120 H+AA T+RIR+GSG V+LPHYS+YKVAENFRVLEALYP RID Sbjct: 61 THIAAKTNRIRVGSGGVMLPHYSSYKVAENFRVLEALYPNRIDLGVGRAPGGMPIATRAL 120 Query: 121 QENRTGGSAELYELQIQDLLSYLYGAPDQSHRFAGLETSPQISTAPELWXXXXXXXXXXX 180 QE + S + Y QIQD+ YL+ ++H++A L+ SP I TAPE+W Sbjct: 121 QEGKM-ISLDQYPEQIQDVAMYLHDKVPENHQYANLKASPIIPTAPEIWMLGSSGESAMI 179 Query: 181 XXXXXTGYAYARFINSAGGSMAVXXXXXXXXXXXXXXXXQALVSVFAVCAETSAEADRLA 240 T +A+A+FIN GG + +++V++F +C ET+ EA+++A Sbjct: 180 AAKQGTAFAFAQFINGYGGPEVMQAYQKQFQPSFLGDKPKSIVAIFVICGETTEEAEKIA 239 Query: 241 ASMDLSLVQLEKGHVSTGTPSVETALGYKYTPYDRFRIEDNRRRMVLGSPDEVRRQFTAL 300 +S+DLS++ LE+G +TGTPS+ETA Y Y+ YD FRI++NR+RM++G PD V+ Q L Sbjct: 240 SSLDLSILLLEQGKRTTGTPSIETAQNYSYSAYDLFRIKENRQRMIVGDPDYVKEQIVHL 299 Query: 301 MEEYQCEEIMFATLMHRYEDKLRSLRLIAEVCGL 334 Y EE M T+ H++EDKL+S RL+AE L Sbjct: 300 SNTYNTEEFMIVTITHQFEDKLKSYRLLAEAFDL 333 >C3AKQ3.1 C3AKQ3_BACMY Putative uncharacterized protein Length = 333 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/334 (47%), Positives = 215/334 (64%), Gaps = 1/334 (0%) Query: 1 MMKLSILDQSPVSEGSTPAEALAETASLAIEADRLGYHRFWVSEHHAARGLAGSSPEVLM 60 M+KLSILDQSP+S+GST EA + T +LA E ++LG+ RFWVSEHH + LAGSSPEVL+ Sbjct: 1 MIKLSILDQSPISDGSTATEAFSNTVTLAQEVEKLGFTRFWVSEHHNSVSLAGSSPEVLI 60 Query: 61 AHLAAVTSRIRIGSGAVLLPHYSAYKVAENFRVLEALYPGRIDXXXXXXXXXXXXXXXXX 120 +H+AA T+RIR+GSG V+LPHYS+YKVAENFRVLEALYP RID Sbjct: 61 SHIAAKTNRIRVGSGGVMLPHYSSYKVAENFRVLEALYPNRIDLGVGRAPGGMPIATRAL 120 Query: 121 QENRTGGSAELYELQIQDLLSYLYGAPDQSHRFAGLETSPQISTAPELWXXXXXXXXXXX 180 QE + S + Y QIQD+ YL+ ++H++A L+ SP I TAPE+W Sbjct: 121 QEGKM-ISLDQYPEQIQDVAMYLHDNVPENHQYANLKASPVIPTAPEIWMLGSSGESAMV 179 Query: 181 XXXXXTGYAYARFINSAGGSMAVXXXXXXXXXXXXXXXXQALVSVFAVCAETSAEADRLA 240 +A+A+FIN GG + +++VS+F VC ET+ EA+++A Sbjct: 180 AAKQGASFAFAQFINGYGGPEVMKAYQEQFQPSFLGDKPKSIVSIFVVCGETTEEAEKIA 239 Query: 241 ASMDLSLVQLEKGHVSTGTPSVETALGYKYTPYDRFRIEDNRRRMVLGSPDEVRRQFTAL 300 +S+DLS++ LE+G +TGTPS+ETA Y Y+ YD FRI++NR+RM++G V+ Q L Sbjct: 240 SSLDLSILLLEQGKRTTGTPSIETAQNYPYSAYDLFRIKENRQRMIVGDQRYVKEQILNL 299 Query: 301 MEEYQCEEIMFATLMHRYEDKLRSLRLIAEVCGL 334 + Y EE M T+ H++EDKL+S RL+AE L Sbjct: 300 SKAYNTEEFMIVTITHQFEDKLKSYRLLAEAFHL 333 >C3BJH8.1 C3BJH8_9BACI Putative uncharacterized protein Length = 333 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 156/334 (46%), Positives = 215/334 (64%), Gaps = 1/334 (0%) Query: 1 MMKLSILDQSPVSEGSTPAEALAETASLAIEADRLGYHRFWVSEHHAARGLAGSSPEVLM 60 M+KLS+LDQSP+S+GST EA + T +LA E ++LG+ RFWVSEHH + LAGSSPEVL+ Sbjct: 1 MIKLSVLDQSPISDGSTATEAFSNTVTLAQEVEKLGFTRFWVSEHHNSVSLAGSSPEVLI 60 Query: 61 AHLAAVTSRIRIGSGAVLLPHYSAYKVAENFRVLEALYPGRIDXXXXXXXXXXXXXXXXX 120 +H+AA T+RIR+GSG V+LPHYS+YKVAENFRVLEALYP RID Sbjct: 61 SHIAAKTNRIRVGSGGVMLPHYSSYKVAENFRVLEALYPNRIDLGVGRAPGGMPIATRAL 120 Query: 121 QENRTGGSAELYELQIQDLLSYLYGAPDQSHRFAGLETSPQISTAPELWXXXXXXXXXXX 180 QE + S + Y QIQD+ YL+ ++H++A L+ SP I TAPE+W Sbjct: 121 QEGKM-ISLDQYPEQIQDVAMYLHDNVPENHQYANLKASPVIPTAPEIWMLGSSGESAMV 179 Query: 181 XXXXXTGYAYARFINSAGGSMAVXXXXXXXXXXXXXXXXQALVSVFAVCAETSAEADRLA 240 +A+A+FIN GG + +++VS+F VC ET+ EA+++A Sbjct: 180 AAKQGASFAFAQFINGYGGPEVMKAYQEQFQPSFLGDKPKSIVSIFVVCGETTEEAEKIA 239 Query: 241 ASMDLSLVQLEKGHVSTGTPSVETALGYKYTPYDRFRIEDNRRRMVLGSPDEVRRQFTAL 300 +S+DLS++ LE+G +TGTPS+ETA Y Y+ YD FRI++NR+RM++G V+ Q L Sbjct: 240 SSLDLSILLLEQGKRTTGTPSIETAQNYPYSAYDLFRIKENRQRMIVGDQRYVKEQILNL 299 Query: 301 MEEYQCEEIMFATLMHRYEDKLRSLRLIAEVCGL 334 + Y EE M T+ H++EDKL+S RL+AE L Sbjct: 300 SKAYNTEEFMIVTITHQFEDKLKSYRLLAEAFHL 333 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,647,919,433 Number of extensions: 55831841 Number of successful extensions: 123313 Number of sequences better than 1.0e-05: 1015 Number of HSP's gapped: 122867 Number of HSP's successfully gapped: 1046 Length of query: 341 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 205 Effective length of database: 1,779,438,163 Effective search space: 364784823415 Effective search space used: 364784823415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)