BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0005.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7Q1.1 B3K7Q1_9BACI Formate/nitrite transporter 361 4e-98 A7Z714.1 A7Z714_BACA2 YrhG 296 1e-78 C2P270.1 C2P270_BACCE Uncharacterized transporter 290 1e-76 C2N4L7.1 C2N4L7_BACCE Uncharacterized transporter 290 1e-76 C3EP38.1 C3EP38_BACTK Uncharacterized transporter 290 1e-76 >B3K7Q1.1 B3K7Q1_9BACI Formate/nitrite transporter Length = 286 Score = 361 bits (927), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 178/265 (67%), Positives = 204/265 (76%) Query: 1 MAYNKPQGIAEVTVENGIKKAHNPLSTVXXXXXXXXXXXXXXXXXDIRVIAGAPKEWGSI 60 MAY+KP+ IAE+TVENG+KKAHN V DIRVIAGA EWG I Sbjct: 1 MAYHKPERIAEITVENGVKKAHNSAINVMILGFLAGAFIALGFLLDIRVIAGASPEWGGI 60 Query: 61 ANFIGASVFPVGLIMVLLAGGELLTGNMMAVPLAFMSKKISFWETIKNLVLITISNFAGA 120 A FIGA+VFPVGLI+VLLAGGELLTGNMMAV LA ++IS E ++NL L+T+SN GA Sbjct: 61 AGFIGAAVFPVGLILVLLAGGELLTGNMMAVSLARFKRRISTKEMMRNLALVTVSNMLGA 120 Query: 121 LFVAYFFGHVVGLTADGVYLDKLVDMAGHKIDATFLQAFVSGIGCNWLVALAVWLSYGAD 180 LFVAYFFGHV G+T GVYL+KLVDMAGHK+D +FLQAF+SGIGCNWLVALAVWLSYG+D Sbjct: 121 LFVAYFFGHVTGMTGSGVYLEKLVDMAGHKLDDSFLQAFLSGIGCNWLVALAVWLSYGSD 180 Query: 181 NFSGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEGHFTWSQYFSNFVPVWLGNLTGG 240 SGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEG+++W +Y NF+PVWLGN GG Sbjct: 181 QMSGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEGYYSWGEYLMNFIPVWLGNFVGG 240 Query: 241 AIFVAFAYWMAYLRKAPAAVQPVEG 265 A+FV Y YL++ A G Sbjct: 241 ALFVGATYGTVYLKQENQAAAAPRG 265 >A7Z714.1 A7Z714_BACA2 YrhG Length = 266 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 144/255 (56%), Positives = 185/255 (72%) Query: 1 MAYNKPQGIAEVTVENGIKKAHNPLSTVXXXXXXXXXXXXXXXXXDIRVIAGAPKEWGSI 60 MA+ KP IAE+ VE+G+KK H+PLS + DIRVI PKEWGS+ Sbjct: 1 MAFRKPDEIAELAVESGVKKVHSPLSALIVLGFLGGAFIALGYLLDIRVIGDLPKEWGSL 60 Query: 61 ANFIGASVFPVGLIMVLLAGGELLTGNMMAVPLAFMSKKISFWETIKNLVLITISNFAGA 120 ++ IGASVFP+GL++V+LAG EL+TGNMM+V +A S++IS +KN V++T+ N GA Sbjct: 61 SSLIGASVFPIGLVLVVLAGAELITGNMMSVSMALFSRRISAGALVKNWVIVTLMNLVGA 120 Query: 121 LFVAYFFGHVVGLTADGVYLDKLVDMAGHKIDATFLQAFVSGIGCNWLVALAVWLSYGAD 180 LFVAYFFGHVVGLT G YL+K + +A K+D F + VS IGCNWLV LAVWLS+GA+ Sbjct: 121 LFVAYFFGHVVGLTETGPYLEKTIAVAQGKLDMPFGKVIVSAIGCNWLVCLAVWLSFGAE 180 Query: 181 NFSGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEGHFTWSQYFSNFVPVWLGNLTGG 240 + +GKI GIWFP MAFVAIGFQHVVANMF+IPAAIF G F+W N +P ++GN+ GG Sbjct: 181 DGAGKIAGIWFPIMAFVAIGFQHVVANMFIIPAAIFAGSFSWGDLIGNLIPAFIGNVIGG 240 Query: 241 AIFVAFAYWMAYLRK 255 A+FV Y++AY +K Sbjct: 241 AVFVGLIYFIAYSKK 255 >C2P270.1 C2P270_BACCE Uncharacterized transporter Length = 271 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/264 (55%), Positives = 188/264 (71%), Gaps = 1/264 (0%) Query: 1 MAYNKPQGIAEVTVENGIKKAHNPLSTVXXXXXXXXXXXXXXXXXDIRVIAGAPKEWGSI 60 M+ P+ I E+ +G KKAH L + DI VI PK WGS Sbjct: 1 MSVFTPEEITELAANSGRKKAHLSLLPMLILGFFGGAFIALGYLLDIHVIGTMPKYWGSF 60 Query: 61 ANFIGASVFPVGLIMVLLAGGELLTGNMMAVPLAFMSKKISFWETIKNLVLITISNFAGA 120 ++F+GA+VFP+GLI+V+LAGGEL+TGNMM V +A++ KKI+ + I+NLV++T SNF GA Sbjct: 61 SSFLGAAVFPIGLILVILAGGELVTGNMMTVSMAWLQKKITLFYFIRNLVIVTFSNFIGA 120 Query: 121 LFVAYFFGHVVGLTADGVYLDKLVDMAGHKIDATFLQAFVSGIGCNWLVALAVWLSYGAD 180 +FVAYFFGH+VGLT +G +L K + +A K+ T LQAF+S IGCNWLV LAVWLS G+ Sbjct: 121 VFVAYFFGHIVGLT-EGAFLAKTISIAQAKLQDTPLQAFISAIGCNWLVCLAVWLSMGSK 179 Query: 181 NFSGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEGHFTWSQYFSNFVPVWLGNLTGG 240 F GKI+GIWFP M FVAIGFQHVVANMF+IPAAIF GHFTW++YF NF+ V+ GNL GG Sbjct: 180 EFIGKIIGIWFPVMTFVAIGFQHVVANMFVIPAAIFAGHFTWAEYFPNFIFVFFGNLVGG 239 Query: 241 AIFVAFAYWMAYLRKAPAAVQPVE 264 +FVA Y+++Y +K PA + E Sbjct: 240 MLFVALPYFISYNKKLPAHQEKTE 263 >C2N4L7.1 C2N4L7_BACCE Uncharacterized transporter Length = 271 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/264 (55%), Positives = 188/264 (71%), Gaps = 1/264 (0%) Query: 1 MAYNKPQGIAEVTVENGIKKAHNPLSTVXXXXXXXXXXXXXXXXXDIRVIAGAPKEWGSI 60 M+ P+ I E+ +G KKAH L + DI VI PK WGS Sbjct: 1 MSVFTPEEITELAANSGRKKAHLSLLPMLILGFFGGAFIALGYLLDIHVIGTMPKYWGSF 60 Query: 61 ANFIGASVFPVGLIMVLLAGGELLTGNMMAVPLAFMSKKISFWETIKNLVLITISNFAGA 120 ++F+GA+VFP+GLI+V+LAGGEL+TGNMM V +A++ KKI+ + I+NLV++T SNF GA Sbjct: 61 SSFLGAAVFPIGLILVILAGGELVTGNMMTVSMAWLQKKITLFYFIRNLVIVTFSNFIGA 120 Query: 121 LFVAYFFGHVVGLTADGVYLDKLVDMAGHKIDATFLQAFVSGIGCNWLVALAVWLSYGAD 180 +FVAYFFGH+VGLT +G +L K + +A K+ T LQAF+S IGCNWLV LAVWLS G+ Sbjct: 121 VFVAYFFGHIVGLT-EGAFLAKTISIAQAKLQDTPLQAFISAIGCNWLVCLAVWLSMGSK 179 Query: 181 NFSGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEGHFTWSQYFSNFVPVWLGNLTGG 240 F GKI+GIWFP M FVAIGFQHVVANMF+IPAAIF GHFTW++YF NF+ V+ GNL GG Sbjct: 180 EFIGKIIGIWFPVMTFVAIGFQHVVANMFVIPAAIFAGHFTWAEYFPNFIFVFFGNLVGG 239 Query: 241 AIFVAFAYWMAYLRKAPAAVQPVE 264 +FVA Y+++Y +K PA + E Sbjct: 240 MLFVALPYFISYNKKLPAHQEKTE 263 >C3EP38.1 C3EP38_BACTK Uncharacterized transporter Length = 271 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/264 (55%), Positives = 187/264 (70%), Gaps = 1/264 (0%) Query: 1 MAYNKPQGIAEVTVENGIKKAHNPLSTVXXXXXXXXXXXXXXXXXDIRVIAGAPKEWGSI 60 M+ P+ I E+ +G KKAH L + DI VI PK WGS Sbjct: 1 MSVFTPEEITELAANSGRKKAHLSLLPMLILGFFGGAFIALGYLLDIHVIGTMPKAWGSF 60 Query: 61 ANFIGASVFPVGLIMVLLAGGELLTGNMMAVPLAFMSKKISFWETIKNLVLITISNFAGA 120 +F+GA+VFP+GLI+V+LAGGEL+TGNMM V +A++ KKI+ + I+NLV++T SNF GA Sbjct: 61 TSFLGAAVFPIGLILVILAGGELVTGNMMTVSMAWLQKKITLFYFIRNLVIVTFSNFIGA 120 Query: 121 LFVAYFFGHVVGLTADGVYLDKLVDMAGHKIDATFLQAFVSGIGCNWLVALAVWLSYGAD 180 +FVAYFFGH+VGLT +G +L K + +A K+ T LQAF+S IGCNWLV LAVWLS G+ Sbjct: 121 VFVAYFFGHIVGLT-EGAFLAKTISIAQAKLQDTPLQAFISAIGCNWLVCLAVWLSMGSK 179 Query: 181 NFSGKILGIWFPTMAFVAIGFQHVVANMFLIPAAIFEGHFTWSQYFSNFVPVWLGNLTGG 240 F GKI+GIWFP M FVAIGFQHVVANMF+IPAAIF GHFTW++YF NF+ V+ GNL GG Sbjct: 180 EFIGKIIGIWFPVMTFVAIGFQHVVANMFVIPAAIFAGHFTWAEYFPNFIFVFFGNLVGG 239 Query: 241 AIFVAFAYWMAYLRKAPAAVQPVE 264 +FVA Y+++Y +K PA + E Sbjct: 240 MLFVALPYFISYNKKLPAHQEKTE 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,621,074,349 Number of extensions: 64576688 Number of successful extensions: 209923 Number of sequences better than 1.0e-05: 1249 Number of HSP's gapped: 206923 Number of HSP's successfully gapped: 1249 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)