BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0004.p (701 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7P9.1 B3K7P9_9BACI Molybdopterin oxidoreductase 1028 0.0 C0ZBJ0.1 C0ZBJ0_BREBN Putative formate dehydrogenase 835 0.0 Q65IQ5.1 Q65IQ5_BACLD YoaE 811 0.0 A4INP3.1 A4INP3_GEOTN Formate dehydrogenase 793 0.0 A8FE30.1 A8FE30_BACP2 Possible molybdopterin dehydrogenase 793 0.0 >B3K7P9.1 B3K7P9_9BACI Molybdopterin oxidoreductase Length = 692 Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/689 (70%), Positives = 560/689 (81%), Gaps = 1/689 (0%) Query: 1 MSYSGDGVFPAVCPLDCPDTCGLLVHKQNGKIIKVEGNPEHPVTKGAICNKVRHMAERVH 60 M + +GVFPAVCPLDCPDTCGLL+HK+NGKI+KV GNPEHP+T+GAICNKVR+MA RV+ Sbjct: 5 MIHQENGVFPAVCPLDCPDTCGLLLHKENGKIVKVTGNPEHPITQGAICNKVRNMAHRVY 64 Query: 61 HPERLLQPLRRTGPKGSGSFTPISWEEAIGEITGRFKELSADYGPESILPYSFYGNMGVL 120 HPER+L PLRR GPKG G+F ISW+EAI EI GR+K L +YG ESILPYSFYGNMG+L Sbjct: 65 HPERVLYPLRRVGPKGEGAFERISWDEAIQEIAGRYKGLIEEYGSESILPYSFYGNMGIL 124 Query: 121 SVDGMDRRFFNALGASRLEQSICNAAGSAGWKYTMGFNGGTSPEDTVNADLIIVWGGNIV 180 SVDGMDRRFFN LGASRL+QSICN+AG+ GWK MGFNGGT PEDTV AD+I+VWGGNIV Sbjct: 125 SVDGMDRRFFNRLGASRLKQSICNSAGNEGWKSVMGFNGGTVPEDTVRADVILVWGGNIV 184 Query: 181 STSMHQVVYAEQARKRGAKVVVIDVHRNRTAQWADWFLPLYPGTDTALALGLMHILFRDG 240 ST+MHQ+V AE+ARK GAKVVVIDVH+N+T QWADWF+PLYPGTD ALA+GLMHI+FRDG Sbjct: 185 STNMHQMVIAEKARKAGAKVVVIDVHKNQTGQWADWFIPLYPGTDAALAVGLMHIMFRDG 244 Query: 241 MTDDAFLERYTIGHEELRSHVLAYPPERVAEITGIAAADIEKLAKLYGEAKVSHIHIGNG 300 M ++ FL +YTIGHE LR HV Y PE V+ ITGI+ DIEKLA+LYG A S+IHIGNG Sbjct: 245 MVNEEFLRKYTIGHEALREHVKEYTPEHVSSITGISIEDIEKLAELYGRADTSYIHIGNG 304 Query: 301 LQHHDNGGMNVRTIACLPALTGAWLKTXXXXXXXXXXYSSTNDRALTRPDLXXXXXXXXX 360 LQHHDNGG+ VR+IA LPALTG WLK Y+S + AL RPDL Sbjct: 305 LQHHDNGGLTVRSIAALPALTGQWLKRGGGAAKSNGGYNSMDSDALERPDLRPNPEARTI 364 Query: 361 XXXXXGEALELKEQPVMGMFVYCSNPVVVAPDAERVRKGFAREDLFTVVHDLFMTDTALY 420 GEAL + EQP+ +FVYCSNP+VVAPD ERVR+GFAREDLFTVVHDLFMTDTA Y Sbjct: 365 NMNRIGEALAMTEQPIKSLFVYCSNPLVVAPDTERVREGFAREDLFTVVHDLFMTDTAKY 424 Query: 421 ADIVLPATSTFENVDLYTSYWHHYIQLQEPVLDAPGECKSNVEVFSLLGKAMGLDAEAFS 480 ADIVLPATS+FEN DLY SYWH Y+QLQEPV+ A GE K NVE+FSLLG+AMG AF Sbjct: 425 ADIVLPATSSFENTDLYASYWHQYVQLQEPVIPALGESKGNVELFSLLGRAMGFQEPAFH 484 Query: 481 ESPYDMIRQALDYPRNPYLNGVTLERLTAERFVKLDMSPQADYLDNLPTPSGKIELYSKA 540 E+ +MI +ALD+P NPYLNGVTL++L R VKLDM+P YLD LPTPSG+IELYS Sbjct: 485 ETEEEMIARALDFPDNPYLNGVTLDKLREHRHVKLDMTPLDTYLDRLPTPSGRIELYSAQ 544 Query: 541 MELAGLPPLPTYTPLKEGYDGQQRPQPGTAYPLMFVSPPNHNFLNSTFSNVEKHQRMEKR 600 +E AGLPPLPTY PLKEGYDG +R + G YPLMF+SPPNHNFLNSTF+NVEKHQ++EK Sbjct: 545 LEEAGLPPLPTYVPLKEGYDGVRRGR-GHQYPLMFISPPNHNFLNSTFANVEKHQKLEKE 603 Query: 601 PTLQIHPEDAAVRGIGEGDGLTVYNGRGSIELWAMVTDKMLPGTVISQGLWWEGKGHKQR 660 P LQIHP DA RG+ +G+ + VYN RG+ E+ A VTDKMLPGTV+SQGLWWEG+G KQR Sbjct: 604 PALQIHPADAEERGLQDGEMVIVYNDRGTYEVRAKVTDKMLPGTVVSQGLWWEGEGRKQR 663 Query: 661 VNVLTPDRLADMGNGATFFSTTVEVKRRE 689 N LTPDRL+D+G GATFFST VEVKR++ Sbjct: 664 ANALTPDRLSDLGEGATFFSTVVEVKRKQ 692 >C0ZBJ0.1 C0ZBJ0_BREBN Putative formate dehydrogenase Length = 680 Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/689 (58%), Positives = 505/689 (73%), Gaps = 14/689 (2%) Query: 1 MSYSG--DGVFPAVCPLDCPDTCGLLVHKQNGKIIKVEGNPEHPVTKGAICNKVRHMAER 58 M+Y+ +GVFPAVC LDCPD CGLL+HK++GKI+K+EG+P HPVTKG ICNKVR+M ER Sbjct: 1 MTYTTQENGVFPAVCSLDCPDQCGLLLHKKDGKIVKIEGDPNHPVTKGNICNKVRNMTER 60 Query: 59 VHHPERLLQPLRRTGPKGSGSFTPISWEEAIGEITGRFKELSADYGPESILPYSFYGNMG 118 ++ P+RL PL+R G KGSG F ISWEEAI IT R++ L GPESILPYSFYGNMG Sbjct: 61 IYDPKRLTHPLKRIGKKGSGEFVRISWEEAITTITERWRALIDSDGPESILPYSFYGNMG 120 Query: 119 VLSVDGMDRRFFNALGASRLEQSICNAAGSAGWKYTMGFNGGTSPEDTVNADLIIVWGGN 178 +SV+GMDRR F+ +GAS+L+++ICN+AG+ G+ YTMG GT PEDTV++ L I+WG N Sbjct: 121 RISVEGMDRRLFHRMGASQLDRTICNSAGAVGYSYTMGGAFGTDPEDTVHSKLFIMWGIN 180 Query: 179 IVSTSMHQVVYAEQARKRGAKVVVIDVHRNRTAQWADWFLPLYPGTDTALALGLMHILFR 238 VST+MHQVV+AEQARK GA++VVIDVH+N+T +WADWF+P+ PGTDTALALG+MH+LF Sbjct: 181 TVSTNMHQVVFAEQARKNGAEIVVIDVHKNQTGRWADWFIPILPGTDTALALGIMHVLFA 240 Query: 239 DGMTDDAFLERYTIGHEELRSHVLAYPPERVAEITGIAAADIEKLAKLYGEAKVSHIHIG 298 + + D AF+E+YT+GHEEL+ HV Y P V+ ITG+ DI KLA++YG S I IG Sbjct: 241 ENLVDSAFMEKYTVGHEELKEHVRTYDPATVSSITGVPVDDIYKLARMYGTISPSFIRIG 300 Query: 299 NGLQHHDNGGMNVRTIACLPALTGAWLKTXXXXXXXXXXYSSTNDRALTRPDLXXXXXXX 358 NG+QHHDNGGM VRTIACLPALTG WL + N A+ RPDL Sbjct: 301 NGIQHHDNGGMCVRTIACLPALTGQWLVKGGGANKGNKGFLEHNKLAVQRPDLLVNKQTR 360 Query: 359 XXXXXXXGEALELKEQPVMGMFVYCSNPVVVAPDAERVRKGFAREDLFTVVHDLFMTDTA 418 G+AL E PV +FVY SNP +VAPD +VR+G AREDLFTVVHDLF+T+TA Sbjct: 361 VINMNELGKALLDAEPPVKSLFVYTSNPAIVAPDGNKVRQGLAREDLFTVVHDLFLTETA 420 Query: 419 LYADIVLPATSTFENVDLYTSYWHHYIQLQEPVLDAPGECKSNVEVFSLLGKAMGLDAEA 478 LYADIVLPATS++EN D YTSYWHHYIQLQ+PV+ GE KSN EVF LL AMG D A Sbjct: 421 LYADIVLPATSSYENTDFYTSYWHHYIQLQQPVIAPFGESKSNTEVFRLLAAAMGYDEPA 480 Query: 479 FSESPYDMIRQALDYPRNPYLNGVTLERLTAERFVKLDMSPQADYLDNLPTPSGKIELYS 538 F +S +M+RQAL+ NP+L G+T E L +++ K ++ P +L++LPTPSGKIELYS Sbjct: 481 FQDSDAEMVRQALEGHGNPHLEGITYETLVEKQYAKANLEPF--FLEHLPTPSGKIELYS 538 Query: 539 KAMELAGLPPLPTYTPLKEGYDGQQRPQPGTAYPLMFVSPPNHNFLNSTFSNVEKHQRME 598 +AM GLPPLPTYTPL+ D +P +FV PNHN+LNSTFSN EKH++ME Sbjct: 539 QAMAKRGLPPLPTYTPLENDGD----------FPYLFVPGPNHNYLNSTFSNNEKHKKME 588 Query: 599 KRPTLQIHPEDAAVRGIGEGDGLTVYNGRGSIELWAMVTDKMLPGTVISQGLWWEGKGHK 658 K P L ++ DA+ GI +GD + ++N RG EL A V + +L G V+SQGLW + +G K Sbjct: 589 KIPRLHMNVADASASGISDGDTVRIWNERGECELVAAVGENVLTGVVVSQGLWADNEGPK 648 Query: 659 QRVNVLTPDRLADMGNGATFFSTTVEVKR 687 VN LTPDR+ADMG GATFFS V+V++ Sbjct: 649 HYVNALTPDRIADMGGGATFFSGRVDVEK 677 >Q65IQ5.1 Q65IQ5_BACLD YoaE Length = 679 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/682 (57%), Positives = 492/682 (72%), Gaps = 12/682 (1%) Query: 6 DGVFPAVCPLDCPDTCGLLVHKQNGKIIKVEGNPEHPVTKGAICNKVRHMAERVHHPERL 65 DG+F +VC LDCPD CGLLVHK++GKI+K++G+P+HPVT+G ICNKVR+M ER++ P+RL Sbjct: 9 DGIFKSVCSLDCPDQCGLLVHKKDGKIVKIQGDPDHPVTQGNICNKVRNMTERIYDPKRL 68 Query: 66 LQPLRRTGPKGSGSFTPISWEEAIGEITGRFKELSADYGPESILPYSFYGNMGVLSVDGM 125 PL+RTGPKG+G F PISW+EAI I R++ L GPESILPYSFYGNMG L+ +GM Sbjct: 69 KTPLKRTGPKGAGMFEPISWDEAIETIRTRWQSLIEQEGPESILPYSFYGNMGNLTAEGM 128 Query: 126 DRRFFNALGASRLEQSICNAAGSAGWKYTMGFNGGTSPEDTVNADLIIVWGGNIVSTSMH 185 DRRFF+ LG+S+L+++IC AGS G+KYTMG + GT PEDT L I WG N VST+MH Sbjct: 129 DRRFFHRLGSSQLDRAICTPAGSVGYKYTMGGSIGTDPEDTTETKLFIFWGINAVSTNMH 188 Query: 186 QVVYAEQARKRGAKVVVIDVHRNRTAQWADWFLPLYPGTDTALALGLMHILFRDGMTDDA 245 Q+ A++ARK GAK+VVIDVH+N+T + ADWF+P+ PGTD+ALALG+MH+LF++ + D++ Sbjct: 189 QITIAQKARKNGAKIVVIDVHKNQTGRMADWFIPIRPGTDSALALGIMHVLFKEHLADES 248 Query: 246 FLERYTIGHEELRSHVLAYPPERVAEITGIAAADIEKLAKLYGEAKVSHIHIGNGLQHHD 305 FL+ +T+GHEELR HV Y P V +TG++ DI +LA+LYG S I IGNGLQHHD Sbjct: 249 FLKEFTVGHEELRRHVRQYDPAAVEAVTGVSRNDIIELARLYGRTSPSLIRIGNGLQHHD 308 Query: 306 NGGMNVRTIACLPALTGAWLKTXXXXXXXXXXYSSTNDRALTRPDLXXXXXXXXXXXXXX 365 NGGM VRTI+CLPA+TG W K + + N +AL RPDL Sbjct: 309 NGGMIVRTISCLPAITGQWTKKGGGAIKGNTAFLAYNTKALQRPDLLKGRTPRVINMNQL 368 Query: 366 GEALELKEQPVMGMFVYCSNPVVVAPDAERVRKGFAREDLFTVVHDLFMTDTALYADIVL 425 G+AL E P+ +FVY SNP VVAP+A +VRKG REDLFTVVHDLF+T+TA YADIVL Sbjct: 369 GKALLETEPPIRSLFVYSSNPAVVAPEANKVRKGLEREDLFTVVHDLFLTETARYADIVL 428 Query: 426 PATSTFENVDLYTSYWHHYIQLQEPVLDAPGECKSNVEVFSLLGKAMGLDAEAFSESPYD 485 PA+S FEN D YTSYWHHY Q+Q+PV++ GE KSN EVF LL +AMG D E +S + Sbjct: 429 PASSAFENTDFYTSYWHHYAQIQKPVIEKYGESKSNTEVFRLLAEAMGFDDEPLKDSDEE 488 Query: 486 MIRQALDYPRNPYLNGVTLERLTAERFVKLDMSPQADYLDNLPTPSGKIELYSKAMELAG 545 MIRQALDYP NP+L+G+ + LT + FVK + + + D LPTPSGKIELYSK ME G Sbjct: 489 MIRQALDYPDNPWLDGIDYDSLTEKHFVKANR--KTVFPDKLPTPSGKIELYSKMMEQHG 546 Query: 546 LPPLPTYTPLKEGYDGQQRPQPGTAYPLMFVSPPNHNFLNSTFSNVEKHQRMEKRPTLQI 605 P LPT+TPL E YP +FV PNHNFLNSTFSN EKH ++EK P L + Sbjct: 547 YPGLPTHTPLIE----------TDKYPFLFVPGPNHNFLNSTFSNNEKHIKLEKEPKLHL 596 Query: 606 HPEDAAVRGIGEGDGLTVYNGRGSIELWAMVTDKMLPGTVISQGLWWEGKGHKQRVNVLT 665 + +DA +GI GD + V+N RGS L A V + +LPG +SQGLW + +G VN LT Sbjct: 597 NIKDAEEKGIENGDLVKVWNDRGSCILPAAVGENVLPGVAVSQGLWADAEGKHYLVNALT 656 Query: 666 PDRLADMGNGATFFSTTVEVKR 687 PDRLADMG GATFFS V++++ Sbjct: 657 PDRLADMGGGATFFSGRVQIEK 678 >A4INP3.1 A4INP3_GEOTN Formate dehydrogenase Length = 679 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/681 (56%), Positives = 484/681 (71%), Gaps = 12/681 (1%) Query: 7 GVFPAVCPLDCPDTCGLLVHKQNGKIIKVEGNPEHPVTKGAICNKVRHMAERVHHPERLL 66 GVFP+VC LDCPD CGLLVHK++GK++K++G+P HPVTKG ICNKVR+M ER++ P+RL Sbjct: 10 GVFPSVCSLDCPDQCGLLVHKKDGKVVKIQGDPSHPVTKGHICNKVRNMMERIYDPKRLK 69 Query: 67 QPLRRTGPKGSGSFTPISWEEAIGEITGRFKELSADYGPESILPYSFYGNMGVLSVDGMD 126 PL+R G KG G F ISW+EA+ I ++KEL YGPESILPYSFYGNMG LS +GMD Sbjct: 70 YPLKRIGAKGEGKFARISWDEALETIAAKWKELIETYGPESILPYSFYGNMGRLSAEGMD 129 Query: 127 RRFFNALGASRLEQSICNAAGSAGWKYTMGFNGGTSPEDTVNADLIIVWGGNIVSTSMHQ 186 RRFF+ LGAS L+++IC++AGS G +YTMG G PE+T++A L+I WG N VST+MHQ Sbjct: 130 RRFFHRLGASLLDRTICSSAGSQGLQYTMGGGFGIDPEETIHAKLVIFWGINAVSTNMHQ 189 Query: 187 VVYAEQARKRGAKVVVIDVHRNRTAQWADWFLPLYPGTDTALALGLMHILFRDGMTDDAF 246 V+ A++ARK GAK+VVIDVH+N+T Q ADWF+P+ PGTD ALALG+MHILF + + DD F Sbjct: 190 VILAQKARKNGAKIVVIDVHKNQTGQLADWFIPILPGTDAALALGMMHILFAENLIDDEF 249 Query: 247 LERYTIGHEELRSHVLAYPPERVAEITGIAAADIEKLAKLYGEAKVSHIHIGNGLQHHDN 306 L +YT+G+EELR HV+ Y P V+ ITG+ D+ LA+ YG+ S I IGNGLQHHDN Sbjct: 250 LRKYTVGYEELREHVVQYDPVTVSNITGVPVEDLYTLARWYGQTTPSFIRIGNGLQHHDN 309 Query: 307 GGMNVRTIACLPALTGAWLKTXXXXXXXXXXYSSTNDRALTRPDLXXXXXXXXXXXXXXG 366 GGM +RTIACLPALTG WL Y + N +L RPDL G Sbjct: 310 GGMCIRTIACLPALTGQWLVKGGGAIKSNSGYLALNQISLQRPDLLQNKHTRIINMNRLG 369 Query: 367 EALELKEQPVMGMFVYCSNPVVVAPDAERVRKGFAREDLFTVVHDLFMTDTALYADIVLP 426 EAL + P+ +FVY +NP VVAP++ +VR+G AREDLF +VHDLF+T+TA YADIVLP Sbjct: 370 EALLELDPPIRSLFVYGTNPAVVAPNSNKVRQGLAREDLFVIVHDLFVTETAKYADIVLP 429 Query: 427 ATSTFENVDLYTSYWHHYIQLQEPVLDAPGECKSNVEVFSLLGKAMGLDAEAFSESPYDM 486 ATS+FEN DLYTSYWHHY+Q+Q+PV++ GE KSNVEVF LL K MG + E+ +M Sbjct: 430 ATSSFENTDLYTSYWHHYVQIQQPVIERYGESKSNVEVFQLLAKRMGFEDPCLYETEEEM 489 Query: 487 IRQALDYPRNPYLNGVTLERLTAERFVKLDMSPQADYLDNLPTPSGKIELYSKAMELAGL 546 I QALD P NP+L G+ E L ++++K + LPTPSGKIELYSK ME G Sbjct: 490 ISQALDNPTNPFLEGIRYETLVEKQYIKAKVKRLLP--GTLPTPSGKIELYSKKMEQDGY 547 Query: 547 PPLPTYTPLKEGYDGQQRPQPGTAYPLMFVSPPNHNFLNSTFSNVEKHQRMEKRPTLQIH 606 PPLPTYTP+ + D +P FV PNHNFLN+TFSN EKH +EK P L ++ Sbjct: 548 PPLPTYTPIVDDGD----------FPFFFVPGPNHNFLNTTFSNNEKHISLEKEPRLYMN 597 Query: 607 PEDAAVRGIGEGDGLTVYNGRGSIELWAMVTDKMLPGTVISQGLWWEGKGHKQRVNVLTP 666 +DA +GI +GD + V+N RG L A V + +LPG V++QGLW + K VN LTP Sbjct: 598 VKDALAKGIQDGDRVRVWNDRGECVLKASVGEHVLPGVVVTQGLWADSPDTKHLVNSLTP 657 Query: 667 DRLADMGNGATFFSTTVEVKR 687 DR+ADMG GATFFS V+V++ Sbjct: 658 DRIADMGGGATFFSGRVDVEK 678 >A8FE30.1 A8FE30_BACP2 Possible molybdopterin dehydrogenase Length = 680 Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/682 (55%), Positives = 482/682 (70%), Gaps = 12/682 (1%) Query: 6 DGVFPAVCPLDCPDTCGLLVHKQNGKIIKVEGNPEHPVTKGAICNKVRHMAERVHHPERL 65 DG+F +VC LDCPD CGLL+HK+NGKI+KV+G+P+HPVT+G ICNK+R++ R++ +RL Sbjct: 9 DGIFKSVCSLDCPDQCGLLIHKENGKIVKVQGDPDHPVTQGNICNKMRNVTARLYDEKRL 68 Query: 66 LQPLRRTGPKGSGSFTPISWEEAIGEITGRFKELSADYGPESILPYSFYGNMGVLSVDGM 125 PL+R G KG G F PI+WEEAI I ++ +L + GPESILPYSFYGNMG L+ +GM Sbjct: 69 TTPLKRVGRKGDGQFAPITWEEAIETIRQKWTKLIDEKGPESILPYSFYGNMGNLNAEGM 128 Query: 126 DRRFFNALGASRLEQSICNAAGSAGWKYTMGFNGGTSPEDTVNADLIIVWGGNIVSTSMH 185 DRRFF LG+S+L+++IC +AG+ G+KYTMG + GT PEDT++ L I WG N VST+MH Sbjct: 129 DRRFFYRLGSSQLDRTICQSAGTTGYKYTMGASIGTDPEDTIHTKLFIFWGINAVSTNMH 188 Query: 186 QVVYAEQARKRGAKVVVIDVHRNRTAQWADWFLPLYPGTDTALALGLMHILFRDGMTDDA 245 Q+ A++ARK+GAK+VVIDVH+N+T + ADWF+PL PGTD+ALALG+MH+LF++G+TD+A Sbjct: 189 QITLAQKARKQGAKIVVIDVHKNQTGRMADWFIPLRPGTDSALALGIMHVLFKEGLTDEA 248 Query: 246 FLERYTIGHEELRSHVLAYPPERVAEITGIAAADIEKLAKLYGEAKVSHIHIGNGLQHHD 305 FLE YT GH+ELR HV Y P+ V ITG++ DI LA++Y E S I IGNGLQHHD Sbjct: 249 FLETYTTGHQELREHVKQYDPDTVEGITGVSKEDIVTLARMYAETSPSLIRIGNGLQHHD 308 Query: 306 NGGMNVRTIACLPALTGAWLKTXXXXXXXXXXYSSTNDRALTRPDLXXXXXXXXXXXXXX 365 NGGM++RTI+CLPALTG WL + S N+ AL RPDL Sbjct: 309 NGGMSIRTISCLPALTGQWLHKGGGAMKSNSSFLSYNETALQRPDLLKDHTPRSFNMNQL 368 Query: 366 GEALELKEQPVMGMFVYCSNPVVVAPDAERVRKGFAREDLFTVVHDLFMTDTALYADIVL 425 G L + +FVY SNP VV P+A +VR+G REDLFTVVHDLF+T+TA YADIVL Sbjct: 369 GSVLTNAAPSIDALFVYSSNPAVVTPEANKVREGLLREDLFTVVHDLFLTETAKYADIVL 428 Query: 426 PATSTFENVDLYTSYWHHYIQLQEPVLDAPGECKSNVEVFSLLGKAMGLDAEAFSESPYD 485 PATS FEN D YTSYWHHYIQ+QEPV++ GE KSN EVF LL AMG + EAF E+ + Sbjct: 429 PATSAFENEDFYTSYWHHYIQIQEPVIERYGESKSNTEVFRLLAHAMGFEDEAFRETDAE 488 Query: 486 MIRQALDYPRNPYLNGVTLERLTAERFVKLDMSPQADYLDNLPTPSGKIELYSKAMELAG 545 ++ QAL +P NP+ ++ E L ++++K P D L TPSGKIELYS+ M+ G Sbjct: 489 LMEQALHHPENPHYEDISYEALKEKKWIKAKRGPFQDL--KLSTPSGKIELYSEQMKKDG 546 Query: 546 LPPLPTYTPLKEGYDGQQRPQPGTAYPLMFVSPPNHNFLNSTFSNVEKHQRMEKRPTLQI 605 P LPTY PL + + YPL F+ PNHNFLNSTFS EKHQ++EK P L + Sbjct: 547 YPALPTYVPLYQ----------ESEYPLTFIPGPNHNFLNSTFSLHEKHQKLEKFPKLHM 596 Query: 606 HPEDAAVRGIGEGDGLTVYNGRGSIELWAMVTDKMLPGTVISQGLWWEGKGHKQRVNVLT 665 + EDA R I +GD + V N RG EL V +L G V+SQGLW + KG KQ VN LT Sbjct: 597 NEEDAKAREIEDGDMVRVLNDRGECELVVSVGQNVLSGVVVSQGLWADQKGKKQLVNGLT 656 Query: 666 PDRLADMGNGATFFSTTVEVKR 687 PDRLADMG GATFFS VEV++ Sbjct: 657 PDRLADMGGGATFFSGRVEVEK 678 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,428,713,399 Number of extensions: 196214395 Number of successful extensions: 469422 Number of sequences better than 1.0e-05: 5094 Number of HSP's gapped: 458038 Number of HSP's successfully gapped: 6850 Length of query: 701 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 558 Effective length of database: 1,713,491,058 Effective search space: 956128010364 Effective search space used: 956128010364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)