BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0065.0002.p
         (158 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5YA95.1 Q5YA95_9CAUD 15                                              139   1e-31
B8I141.1 B8I141_CLOCE Phage protein                                   103   5e-21
B0MKW8.1 B0MKW8_9FIRM Putative uncharacterized protein                102   1e-20
Q9A0Q4.1 Q9A0Q4_STRP1 Putative uncharacterized protein                 92   1e-17
Q1CPU1.1 Q1CPU1_STRPB Phage protein                                    92   1e-17

>Q5YA95.1 Q5YA95_9CAUD 15
          Length = 185

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 78/95 (82%), Gaps = 1/95 (1%)

Query: 1   MPACNQAKIELTVHSQEHGDVVIFHNLFLHTKTEGLLSNFFAGIGQKRKGEKLKMNWQTV 60
           MP CN+AK++LT+HS EHGDV +FH L LHTKTEG LSNFFAGIGQK+ GE+L+MNW  V
Sbjct: 48  MPPCNEAKLDLTIHSPEHGDVTLFHRLLLHTKTEGFLSNFFAGIGQKKPGERLRMNWNAV 107

Query: 61  IGSKGRLKLEVNKFRGRDGEERTNNQVKSFYPADE 95
           +GSKGR K+E NK+  + GEER NNQV++F P +E
Sbjct: 108 VGSKGRCKIEHNKYMSK-GEERVNNQVQTFLPYEE 141


>B8I141.1 B8I141_CLOCE Phage protein
          Length = 160

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 1   MPACNQAKIELTVHSQEHGDVVIFHNLFLHTKTEGLLSNFFAGIGQKRKGEKLKMNWQTV 60
           +PACN+A I + + + E G   I HNLFLHTKTEG+L  FF  IGQ++KGE+  MNW  V
Sbjct: 46  LPACNKAVIHIRIEAPE-GVTTIKHNLFLHTKTEGMLCAFFTAIGQRKKGERATMNWNAV 104

Query: 61  IGSKGRLKLEVNKFRGRDGEERTNNQVKSFY 91
           +GSKGR K+ +  ++  DG E T+N +K FY
Sbjct: 105 VGSKGRCKVGIRTWKTDDGREMTSNDIKRFY 135


>B0MKW8.1 B0MKW8_9FIRM Putative uncharacterized protein
          Length = 160

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1   MPACNQAKIELTVHSQEHGDVVIFHNLFLHTKTEGLLSNFFAGIGQKRKGEKLKMNWQTV 60
           +P CN+A + + + + E G   I HNLFLH+K EG+LS FF GIGQK+ GE L+MNW  V
Sbjct: 46  LPPCNKAVVSIHIDAPE-GSTTIQHNLFLHSKCEGMLSAFFIGIGQKKHGEPLRMNWNNV 104

Query: 61  IGSKGRLKLEVNKFRGRDGEERTNNQVKSFY 91
           IG+KGR K+ ++ ++ ++GEE  +N++K FY
Sbjct: 105 IGAKGRCKVYIDTWKNKNGEEMQSNRIKKFY 135


>Q9A0Q4.1 Q9A0Q4_STRP1 Putative uncharacterized protein
          Length = 211

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 1   MPACNQAKIELTVHSQEHGDVVIFHNLFLHTKTEGLLSNFFAGIGQKRKGEKLKMNWQTV 60
           +PACN+A + + + + E G   + HNLFLHT TEG+LS FF  IGQK+ GE LKMNW TV
Sbjct: 55  LPACNKAVVTIQIETSE-GIAQLTHNLFLHTTTEGMLSAFFGAIGQKKHGEPLKMNWNTV 113

Query: 61  IGSKGRLKLEVNKFRGRDGEERTNNQVKSFYPADE 95
           IG+KG  ++   K  G D  +R  + +KS   ADE
Sbjct: 114 IGAKGVARINKRKGTG-DYADREYDNIKSMIYADE 147


>Q1CPU1.1 Q1CPU1_STRPB Phage protein
          Length = 211

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 1   MPACNQAKIELTVHSQEHGDVVIFHNLFLHTKTEGLLSNFFAGIGQKRKGEKLKMNWQTV 60
           +PACN+A + + + + E G   + HNLFLHT TEG+LS FF  IGQK+ GE LKMNW TV
Sbjct: 55  LPACNKAVVTIQIETSE-GIAQLTHNLFLHTTTEGMLSAFFGAIGQKKHGEPLKMNWNTV 113

Query: 61  IGSKGRLKLEVNKFRGRDGEERTNNQVKSFYPADE 95
           IG+KG  ++   K  G D  +R  + +KS   ADE
Sbjct: 114 IGAKGVARINKRKGTG-DYADREYDNIKSMIYADE 147


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 752,752,390
Number of extensions: 22851667
Number of successful extensions: 42070
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 42064
Number of HSP's successfully gapped: 8
Length of query: 158
Length of database: 3,060,696,203
Length adjustment: 119
Effective length of query: 39
Effective length of database: 1,939,595,418
Effective search space: 75644221302
Effective search space used: 75644221302
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)