BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0013.p (394 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7K5.1 B3K7K5_9BACI UDP-N-acetylglucosamine 2-epimerase EC=5.1... 692 0.0 B1DEH9.1 B1DEH9_9BACL UDP-N-acetylglucosamine 2-epimerase EC=5.1... 637 0.0 C0Z817.1 C0Z817_BREBN UDP-N-acetylglucosamine 2-epimerase EC=5.1... 536 e-150 C3GAQ7.1 C3GAQ7_BACTU UDP-N-acetylglucosamine 2-epimerase 533 e-149 Q630Y4.1 Q630Y4_BACCZ UDP-N-acetylglucosamine 2-epimerase EC=5.1... 531 e-149 >B3K7K5.1 B3K7K5_9BACI UDP-N-acetylglucosamine 2-epimerase EC=5.1.3.14 Length = 385 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/384 (85%), Positives = 356/384 (92%) Query: 11 MSKIKVMTIFGVRPEAIKMAPLVLELAKHPEHIESVVCVTAQHRELLDQVLEVFKITPDY 70 MSK+KVMTIFGVRPEAIKMAPL+LEL +HPEHIESVVCVTAQHR++LDQVL+VFKI PDY Sbjct: 1 MSKVKVMTIFGVRPEAIKMAPLILELQRHPEHIESVVCVTAQHRQMLDQVLDVFKIVPDY 60 Query: 71 DLDVMKDRQTLNEITIRVLEGLEPVLREAKPDLVLVHGDTLTTFLASYASFLQQIQVGHV 130 DLDVMKDRQTLNEIT+RVLEGLEPVLREAKPD+VLVHGDTLTTFLASYA+FLQQIQVGHV Sbjct: 61 DLDVMKDRQTLNEITVRVLEGLEPVLREAKPDIVLVHGDTLTTFLASYAAFLQQIQVGHV 120 Query: 131 EAGLRTWNKLSPYPEEMNRQLTGVLADLHFSPTDWSAGNLRHENKKESSIYITGNTVTDV 190 EAGLRTWNKL+PYPEEMNRQLTGVLADLHF+PTDWSA NLR ENK ES IY+TGNT TDV Sbjct: 121 EAGLRTWNKLNPYPEEMNRQLTGVLADLHFAPTDWSAENLRKENKPESRIYVTGNTATDV 180 Query: 191 FQYTVQPDYRHPVLDFASGKRLILMTAHRRESQGEPHRHIFRAVKRIADEFEDVAIVYPV 250 FQYTV+ Y HPVLD+A KRLILMTAHRRESQGEPHR IF AVKRIADEFED+AIVYPV Sbjct: 181 FQYTVREGYTHPVLDWAQDKRLILMTAHRRESQGEPHRQIFEAVKRIADEFEDIAIVYPV 240 Query: 251 HPSPAVKEPAHEILGGHPRIKLIDPLDVVDLHNFYPHTHLILTDSGGLQEEAPSFGVPVL 310 HPSPAVKEPAH ILG HPRIKLI+PLDVVD++N + TH I+TDSGG+QEEAPSFGVP L Sbjct: 241 HPSPAVKEPAHRILGNHPRIKLIEPLDVVDMNNIFTRTHFIITDSGGMQEEAPSFGVPTL 300 Query: 311 VLRDTTERPEGIEAGTLELVGTDEEKVYQRTHALLTDQELYQSMSRAANPYGDGKASERI 370 VLRDTTERPEGIEAGTLELVGT EE VY+R ALLTDQELY MS+AANPYGDG+AS+RI Sbjct: 301 VLRDTTERPEGIEAGTLELVGTQEENVYERIKALLTDQELYDKMSKAANPYGDGQASQRI 360 Query: 371 VNAILHHFGVIQDRPEEFHRMFTK 394 VNAILHHFG+ ++RPEEFHRMFTK Sbjct: 361 VNAILHHFGIRKERPEEFHRMFTK 384 >B1DEH9.1 B1DEH9_9BACL UDP-N-acetylglucosamine 2-epimerase EC=5.1.3.14 Length = 382 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/378 (78%), Positives = 338/378 (89%) Query: 11 MSKIKVMTIFGVRPEAIKMAPLVLELAKHPEHIESVVCVTAQHRELLDQVLEVFKITPDY 70 MSK+KVMTIFG RPEA+KMAPLVLEL KH + IES+VCVTAQHR++LDQVL+ F+I P+Y Sbjct: 1 MSKLKVMTIFGTRPEAVKMAPLVLELNKHADQIESIVCVTAQHRQMLDQVLDFFEIQPNY 60 Query: 71 DLDVMKDRQTLNEITIRVLEGLEPVLREAKPDLVLVHGDTLTTFLASYASFLQQIQVGHV 130 DL+VMKDRQTL E T+RVLEGL+PVL EAKPD+VLVHGDT TTFLASYASFL+QIQVGHV Sbjct: 61 DLNVMKDRQTLTETTVRVLEGLDPVLAEAKPDIVLVHGDTQTTFLASYASFLKQIQVGHV 120 Query: 131 EAGLRTWNKLSPYPEEMNRQLTGVLADLHFSPTDWSAGNLRHENKKESSIYITGNTVTDV 190 EAGLRTWNKLSPYPEEMNRQL GVL+D+HF+PT+WSAGNLR ENK E+SIY+TGNT TDV Sbjct: 121 EAGLRTWNKLSPYPEEMNRQLAGVLSDVHFAPTEWSAGNLRKENKSEASIYVTGNTATDV 180 Query: 191 FQYTVQPDYRHPVLDFASGKRLILMTAHRRESQGEPHRHIFRAVKRIADEFEDVAIVYPV 250 FQYTV P + HPV+++A GKR+ILMTAHRRE+ GEPHR+IFRAVKRIADE EDVAIVY V Sbjct: 181 FQYTVDPSFSHPVIEWAKGKRMILMTAHRREALGEPHRNIFRAVKRIADEHEDVAIVYAV 240 Query: 251 HPSPAVKEPAHEILGGHPRIKLIDPLDVVDLHNFYPHTHLILTDSGGLQEEAPSFGVPVL 310 HP+PAV+EPA+EILG HPRI+LI+PLDV + HNFYPH ++I+TDSGGLQEEAPSFGVP L Sbjct: 241 HPNPAVREPANEILGNHPRIQLIEPLDVFEFHNFYPHAYMIMTDSGGLQEEAPSFGVPTL 300 Query: 311 VLRDTTERPEGIEAGTLELVGTDEEKVYQRTHALLTDQELYQSMSRAANPYGDGKASERI 370 VLRDTTERPEGIEAGTLELVGTDEE VY R ALL D LY+ MS++ANPYGDG+AS RI Sbjct: 301 VLRDTTERPEGIEAGTLELVGTDEETVYSRARALLNDAALYEKMSKSANPYGDGQASVRI 360 Query: 371 VNAILHHFGVIQDRPEEF 388 V AILHHFG +RPE F Sbjct: 361 VQAILHHFGRTNERPEPF 378 >C0Z817.1 C0Z817_BREBN UDP-N-acetylglucosamine 2-epimerase EC=5.1.3.14 Length = 382 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/379 (67%), Positives = 306/379 (80%) Query: 11 MSKIKVMTIFGVRPEAIKMAPLVLELAKHPEHIESVVCVTAQHRELLDQVLEVFKITPDY 70 M +KVMT+FG RPEAIKMAPLV EL K+ E IESVVCVTAQHR++LDQVL++F I PD Sbjct: 1 MKTVKVMTVFGTRPEAIKMAPLVHELNKYSEQIESVVCVTAQHRQMLDQVLDIFDIQPDI 60 Query: 71 DLDVMKDRQTLNEITIRVLEGLEPVLREAKPDLVLVHGDTLTTFLASYASFLQQIQVGHV 130 DL++MKDRQTL +T R LE L+ ++E KPD+VLVHGDT TTF+AS A+F Q+ +GHV Sbjct: 61 DLNIMKDRQTLVGVTTRALESLDETMKEVKPDIVLVHGDTTTTFVASLAAFYNQVAIGHV 120 Query: 131 EAGLRTWNKLSPYPEEMNRQLTGVLADLHFSPTDWSAGNLRHENKKESSIYITGNTVTDV 190 EAGLRTW+K SP+PEEMNRQLTGV+ADLHFSPT+ SA NLR E K E SIY+TGNT D Sbjct: 121 EAGLRTWDKYSPFPEEMNRQLTGVMADLHFSPTNGSADNLRREAKPEKSIYVTGNTAIDA 180 Query: 191 FQYTVQPDYRHPVLDFASGKRLILMTAHRRESQGEPHRHIFRAVKRIADEFEDVAIVYPV 250 + TV+ DY HPVLD +G++L+LMTAHRRE+ GEP R IFRAV+R+ DE ++++VYPV Sbjct: 181 LKTTVREDYTHPVLDRVAGQKLVLMTAHRRENLGEPMRRIFRAVRRLVDEHPEISVVYPV 240 Query: 251 HPSPAVKEPAHEILGGHPRIKLIDPLDVVDLHNFYPHTHLILTDSGGLQEEAPSFGVPVL 310 H +PAV+E A EILG H RI LI+PLD +D HNF +HLILTDSGG+QEEAPS GVPVL Sbjct: 241 HLNPAVQEVAQEILGNHDRISLIEPLDALDFHNFARRSHLILTDSGGVQEEAPSLGVPVL 300 Query: 311 VLRDTTERPEGIEAGTLELVGTDEEKVYQRTHALLTDQELYQSMSRAANPYGDGKASERI 370 VLRDTTERPEGIEAGTL+LVGTDEE+VY LLT+Q Y +M+ A NPYGDG+AS RI Sbjct: 301 VLRDTTERPEGIEAGTLKLVGTDEEQVYAMAKELLTNQAAYDAMAHAVNPYGDGEASRRI 360 Query: 371 VNAILHHFGVIQDRPEEFH 389 V AIL+HFG+ ++PE F Sbjct: 361 VEAILYHFGLRAEQPEPFQ 379 >C3GAQ7.1 C3GAQ7_BACTU UDP-N-acetylglucosamine 2-epimerase Length = 371 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/367 (68%), Positives = 302/367 (82%) Query: 13 KIKVMTIFGVRPEAIKMAPLVLELAKHPEHIESVVCVTAQHRELLDQVLEVFKITPDYDL 72 ++KVMTIFG RPEAIKMAPLVLEL KHPE IES+V VTAQHR++LDQVL +F ITPD+DL Sbjct: 4 RLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDL 63 Query: 73 DVMKDRQTLNEITIRVLEGLEPVLREAKPDLVLVHGDTLTTFLASYASFLQQIQVGHVEA 132 ++MKDRQTL +IT R LEGL+ V++EAKPD+VLVHGDT TTF+AS A+F QI VGHVEA Sbjct: 64 NIMKDRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEA 123 Query: 133 GLRTWNKLSPYPEEMNRQLTGVLADLHFSPTDWSAGNLRHENKKESSIYITGNTVTDVFQ 192 GLRTW+K SPYPEEMNRQLTGV+ADLHFSPT SA NL+ ENK ES I+ITGNT D + Sbjct: 124 GLRTWDKYSPYPEEMNRQLTGVMADLHFSPTTKSATNLQKENKDESRIFITGNTAIDALK 183 Query: 193 YTVQPDYRHPVLDFASGKRLILMTAHRRESQGEPHRHIFRAVKRIADEFEDVAIVYPVHP 252 TV+ Y HPVLD RL+LMTAHRRE+ GEP R++FRA+KR+ D+ EDV +VYPVH Sbjct: 184 TTVKETYSHPVLDKLGNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHM 243 Query: 253 SPAVKEPAHEILGGHPRIKLIDPLDVVDLHNFYPHTHLILTDSGGLQEEAPSFGVPVLVL 312 +P V+E A++ILG H RI LI+PLDV+D HN ++L+LTDSGG+QEEAPS GVPVLVL Sbjct: 244 NPVVRETANDILGDHGRIHLIEPLDVIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVL 303 Query: 313 RDTTERPEGIEAGTLELVGTDEEKVYQRTHALLTDQELYQSMSRAANPYGDGKASERIVN 372 RDTTERPEGIEAGTL+L GTDEE ++ LL+D+E + MS+A+NPYGDG+ASERIV Sbjct: 304 RDTTERPEGIEAGTLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVE 363 Query: 373 AILHHFG 379 AIL HF Sbjct: 364 AILKHFN 370 >Q630Y4.1 Q630Y4_BACCZ UDP-N-acetylglucosamine 2-epimerase EC=5.1.3.14 Length = 371 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/367 (68%), Positives = 302/367 (82%) Query: 13 KIKVMTIFGVRPEAIKMAPLVLELAKHPEHIESVVCVTAQHRELLDQVLEVFKITPDYDL 72 ++KVMTIFG RPEAIKMAPLVLEL KHPE IES+V VTAQHR++LDQVL +F ITPD+DL Sbjct: 4 RLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDL 63 Query: 73 DVMKDRQTLNEITIRVLEGLEPVLREAKPDLVLVHGDTLTTFLASYASFLQQIQVGHVEA 132 ++MKDRQTL +IT R LEGL+ V++EAKPD+VLVHGDT TTF+AS A+F QI VGHVEA Sbjct: 64 NIMKDRQTLIDITTRSLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEA 123 Query: 133 GLRTWNKLSPYPEEMNRQLTGVLADLHFSPTDWSAGNLRHENKKESSIYITGNTVTDVFQ 192 GLRTW+K SPYPEEMNRQLTGV+ADLHFSPT SA NL+ ENK ES I+ITGNT D + Sbjct: 124 GLRTWDKYSPYPEEMNRQLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNTAIDALK 183 Query: 193 YTVQPDYRHPVLDFASGKRLILMTAHRRESQGEPHRHIFRAVKRIADEFEDVAIVYPVHP 252 TV+ Y HPVL+ RL+LMTAHRRE+ GEP R++FRA+KR+ D+ EDV +VYPVH Sbjct: 184 TTVKETYSHPVLEKLGNDRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHM 243 Query: 253 SPAVKEPAHEILGGHPRIKLIDPLDVVDLHNFYPHTHLILTDSGGLQEEAPSFGVPVLVL 312 +P V+E A++ILG H RI LI+PLDV+D HN ++L+LTDSGG+QEEAPS GVPVLVL Sbjct: 244 NPVVRETANDILGDHGRIHLIEPLDVIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVL 303 Query: 313 RDTTERPEGIEAGTLELVGTDEEKVYQRTHALLTDQELYQSMSRAANPYGDGKASERIVN 372 RDTTERPEGIEAGTL+L GTDEE ++ LL+D+E + MS+A+NPYGDG+ASERIV Sbjct: 304 RDTTERPEGIEAGTLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVE 363 Query: 373 AILHHFG 379 AIL HF Sbjct: 364 AILQHFN 370 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,437,290,154 Number of extensions: 105586980 Number of successful extensions: 253199 Number of sequences better than 1.0e-05: 1285 Number of HSP's gapped: 250500 Number of HSP's successfully gapped: 1287 Length of query: 394 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 256 Effective length of database: 1,760,596,133 Effective search space: 450712610048 Effective search space used: 450712610048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)