BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0010.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7K2.1 B3K7K2_9BACI ATP synthase subunit a 285 4e-75 B1DEH6.1 B1DEH6_9BACL ATP synthase subunit a 280 1e-73 A7GV62.1 A7GV62_BACCN ATP synthase subunit a 218 6e-55 C3H9B6.1 C3H9B6_BACTU ATP synthase a chain 205 3e-51 Q814V6.1 Q814V6_BACCR ATP synthase subunit a 204 5e-51 >B3K7K2.1 B3K7K2_9BACI ATP synthase subunit a Length = 266 Score = 285 bits (728), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 151/278 (54%), Positives = 195/278 (70%), Gaps = 25/278 (8%) Query: 1 MHKSPIIMLGGLHIDLSIVLMLLVTCTIVFVLALLATRNLSVENPGKLQNFLEWAIEFVQ 60 MH SPII LGGL+IDLS V+MLLVTC +VFVL LA R+LSVENP KLQNF+EW +EFVQ Sbjct: 14 MHDSPIIKLGGLNIDLSAVIMLLVTCVVVFVLCRLAVRSLSVENPSKLQNFMEWVVEFVQ 73 Query: 61 GLISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYHDAEHAKVFGKEIVSVTK 120 G+++S MDLKKGK ++SLG+ LI+F+FV NLLGLP I+TD E+ VFG+ I++ T Sbjct: 74 GVVASAMDLKKGKAYISLGLTLILFIFVANLLGLPFSIITDL--PENFTVFGQPILA-TL 130 Query: 121 ELDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVMIFLMTHIVGMTRNTKNY 180 L+ H +H V WWKSPTAD +V GLA+++F++ + +G+ N K+Y Sbjct: 131 GLEHGHY--------AH------VLWWKSPTADISVTAGLAIVVFVLMNYLGLKLNRKHY 176 Query: 181 FKHYFEPYPFFFPINLIEQVSKLLTHGMRLFGNIFAGEVLISVILKLAALGVGGWIASVL 240 KHY EP+P F P+N+IE ++K + +RL+ NIFAGEVLI+VILK G+ A Sbjct: 177 LKHYIEPFPIFLPLNIIENLAKPIALAIRLYANIFAGEVLITVILKTGFYGIPFMAA--- 233 Query: 241 GLIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLETHDEH 278 WQGFSIFIG +QAFIF +LTMVY SQ H+EH Sbjct: 234 ----WQGFSIFIGALQAFIFTILTMVYISQT-TIHEEH 266 >B1DEH6.1 B1DEH6_9BACL ATP synthase subunit a Length = 254 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/277 (52%), Positives = 194/277 (70%), Gaps = 29/277 (10%) Query: 2 HKSPIIMLGGLHIDLSIVLMLLVTCTIVFVLALLATRNLSVENPGKLQNFLEWAIEFVQG 61 H SP + + G+ DL+++ M+L+T IVFVLA L+ RN+SV NP KLQNFLEW IEFVQ Sbjct: 3 HISPTVHVAGIEFDLAVIAMILITSIIVFVLARLSVRNISVTNPTKLQNFLEWVIEFVQN 62 Query: 62 LISSTMDLKKGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYHDAEHAKVFGKEIVSVTKE 121 +I ++MDLKKG+P+L LG+ LIM++FVG++LGLPLGIVT+ H A +FG + Sbjct: 63 IIGTSMDLKKGRPYLILGLTLIMYIFVGDMLGLPLGIVTEVHHG--ASIFGMNL------ 114 Query: 122 LDKLHAEAGTVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVMIFLMTHIVGMTRNTKNYF 181 + G EEA +AWWKSPTAD AV L +++ L+THI G+ NTK+Y Sbjct: 115 -----------DLGGEEEAH--IAWWKSPTADVAVTGALTLIVVLLTHIEGLRLNTKHYL 161 Query: 182 KHYFEPYPFFFPINLIEQVSKLLTHGMRLFGNIFAGEVLISVILKLAALGVGGWIASVLG 241 KHY EP+ F P++LI++VSK L+ +RL+GNIFAGEV+I+VI LG+G W + Sbjct: 162 KHYVEPHWLFLPLSLIKEVSKPLSLALRLYGNIFAGEVMIAVI-----LGMGVW--GIPA 214 Query: 242 LIVWQGFSIFIGTIQAFIFVMLTMVYFSQMLETHDEH 278 L+VWQGFS+F+G IQAF+F MLTMVY SQ + H+EH Sbjct: 215 LVVWQGFSVFVGAIQAFVFCMLTMVYMSQAI-VHEEH 250 >A7GV62.1 A7GV62_BACCN ATP synthase subunit a Length = 239 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 116/267 (43%), Positives = 167/267 (62%), Gaps = 40/267 (14%) Query: 11 GLHIDLSIVLMLLVTCTIVFVLALLATRNLSVENPGKLQNFLEWAIEFVQGLISSTMDLK 70 GL DLS V+M+ V IVF++A++ TR+L++ P +QNFLEW ++FV+G+I STMD K Sbjct: 11 GLTFDLSAVIMVTVAAVIVFLIAVIGTRSLALR-PTGMQNFLEWVLDFVKGIIGSTMDWK 69 Query: 71 KGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYHDAEHAKVFGKEIVSVTKELDKLHAEAG 130 G FL+LG+ L+MF+FV N+LGLP Sbjct: 70 TGGRFLTLGVTLMMFIFVSNMLGLPFMF-------------------------------S 98 Query: 131 TVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVMIFLMTHIVGMT-RNTKNYFKHYFEPYP 189 T G H +AWW+SPT+DPAV + LAVM+ +TH G+ + TK Y K YF+P Sbjct: 99 TTEAGEH------IAWWRSPTSDPAVTLTLAVMVVTLTHYYGIKMKGTKEYIKGYFQPMK 152 Query: 190 FFFPINLIEQVSKLLTHGMRLFGNIFAGEVLISVILKLAALGVGGWIASVLGLIVWQGFS 249 F FP+ +IE+ + LT G+RLFGNI+AGE+L++++ +L A G G + +V+ ++ W GFS Sbjct: 153 FLFPLKVIEEFANTLTLGLRLFGNIYAGEILLTLLAQLGASGAFGALGAVVPMLAWMGFS 212 Query: 250 IFIGTIQAFIFVMLTMVYFSQMLETHD 276 +F+G+IQAFIF MLTMVY + + +HD Sbjct: 213 VFVGSIQAFIFTMLTMVYMAHKV-SHD 238 >C3H9B6.1 C3H9B6_BACTU ATP synthase a chain Length = 239 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/267 (43%), Positives = 166/267 (62%), Gaps = 40/267 (14%) Query: 11 GLHIDLSIVLMLLVTCTIVFVLALLATRNLSVENPGKLQNFLEWAIEFVQGLISSTMDLK 70 GL DLS V+M+ V IVF++A++ TR+L++ P +QNF+EW +FV+G+I+STMD K Sbjct: 11 GLTFDLSSVMMVTVAAVIVFLIAVIGTRSLALR-PTGMQNFMEWVFDFVKGIINSTMDWK 69 Query: 71 KGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYHDAEHAKVFGKEIVSVTKELDKLHAEAG 130 G FL+LG+ LIMF+ V N LGLP + A A Sbjct: 70 TGGRFLTLGVTLIMFIIVSNFLGLPF-----MYSATEA---------------------- 102 Query: 131 TVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVMIFLMTHIVGMT-RNTKNYFKHYFEPYP 189 G H +AWW+SPT+DPAV + LAVM+ +TH G+ + TK Y K YF+P Sbjct: 103 ----GEH------IAWWRSPTSDPAVTLTLAVMVVTLTHYYGIKMKGTKEYVKGYFQPMK 152 Query: 190 FFFPINLIEQVSKLLTHGMRLFGNIFAGEVLISVILKLAALGVGGWIASVLGLIVWQGFS 249 F FP+ +IE+ + LT G+RLFGNI+AGE+L+ ++ KL V G + +++ ++ W GFS Sbjct: 153 FLFPLKVIEEFANTLTLGLRLFGNIYAGEILLGLLAKLGGASVLGAVGALVPMLAWMGFS 212 Query: 250 IFIGTIQAFIFVMLTMVYFSQMLETHD 276 +F+G+IQAFIFVMLTMVY + + +HD Sbjct: 213 VFVGSIQAFIFVMLTMVYMAHKV-SHD 238 >Q814V6.1 Q814V6_BACCR ATP synthase subunit a Length = 239 Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/267 (43%), Positives = 166/267 (62%), Gaps = 40/267 (14%) Query: 11 GLHIDLSIVLMLLVTCTIVFVLALLATRNLSVENPGKLQNFLEWAIEFVQGLISSTMDLK 70 GL DLS V+M+ V IVF++A++ TR+L++ P +QNF+EW +FV+G+I+STMD K Sbjct: 11 GLTFDLSSVMMVTVAAVIVFLIAVIGTRSLALR-PTGMQNFMEWVFDFVKGIINSTMDWK 69 Query: 71 KGKPFLSLGMALIMFLFVGNLLGLPLGIVTDYHDAEHAKVFGKEIVSVTKELDKLHAEAG 130 G FL+LG+ LIMF+ V N LGLP + A A Sbjct: 70 TGGRFLTLGVTLIMFIIVSNFLGLPF-----MYSATEA---------------------- 102 Query: 131 TVNTGSHEEAEVGVAWWKSPTADPAVAMGLAVMIFLMTHIVGMT-RNTKNYFKHYFEPYP 189 G H +AWW+SPT+DPAV + LAVM+ +TH G+ + TK Y K YF+P Sbjct: 103 ----GEH------IAWWRSPTSDPAVTLTLAVMVVTLTHYYGIKMKGTKEYVKGYFQPMK 152 Query: 190 FFFPINLIEQVSKLLTHGMRLFGNIFAGEVLISVILKLAALGVGGWIASVLGLIVWQGFS 249 F FP+ +IE+ + LT G+RLFGNI+AGE+L+ ++ KL V G + +++ ++ W GFS Sbjct: 153 FLFPLKVIEEFANTLTLGLRLFGNIYAGEILLGLLAKLGGASVLGALGALVPMLAWMGFS 212 Query: 250 IFIGTIQAFIFVMLTMVYFSQMLETHD 276 +F+G+IQAFIFVMLTMVY + + +HD Sbjct: 213 VFVGSIQAFIFVMLTMVYMAHKV-SHD 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,608,600,384 Number of extensions: 64695697 Number of successful extensions: 268896 Number of sequences better than 1.0e-05: 1511 Number of HSP's gapped: 271173 Number of HSP's successfully gapped: 1698 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)