BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0009.p
         (75 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q59201.1 Q59201_BACFI ATP synthase C chain EC=3.6.3.-                  73   1e-11
C2C2Y5.1 C2C2Y5_LISGR H(+)-transporting two-sector ATPase EC=3.6...    72   1e-11
B1HM51.1 B1HM51_LYSSC ATP synthase C chain EC=3.6.3.-                  71   3e-11
C5D995.1 C5D995_9BACI ATP synthase F0, C subunit                       71   3e-11
B4BP71.1 B4BP71_9BACI ATP synthase C chain EC=3.6.3.-                  71   3e-11

>Q59201.1 Q59201_BACFI ATP synthase C chain EC=3.6.3.-
          Length = 70

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFMFYVG 73
          SKTVEG+ARQPEA+  LQTTMFIGVALVEA+PIIGVV+AFM   G
Sbjct: 26 SKTVEGMARQPEARGMLQTTMFIGVALVEAVPIIGVVIAFMVIGG 70


>C2C2Y5.1 C2C2Y5_LISGR H(+)-transporting two-sector ATPase EC=3.6.3.14
          Length = 72

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFM 69
          SKTVEG+ARQPEA+S LQT MFIG+ALVEALPII VV+AFM
Sbjct: 28 SKTVEGVARQPEARSMLQTIMFIGIALVEALPIIAVVIAFM 68


>B1HM51.1 B1HM51_LYSSC ATP synthase C chain EC=3.6.3.-
          Length = 74

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 38/41 (92%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFM 69
          SKTVEGIARQPEA+  LQTTMFIGVALVEALPII VV+AF+
Sbjct: 30 SKTVEGIARQPEARGVLQTTMFIGVALVEALPIIAVVVAFI 70


>C5D995.1 C5D995_9BACI ATP synthase F0, C subunit
          Length = 70

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFM 69
          S+TVEGIARQPEA+  LQTTMFIGVALVEA+PII VV+AFM
Sbjct: 26 SRTVEGIARQPEARGMLQTTMFIGVALVEAIPIIAVVIAFM 66


>B4BP71.1 B4BP71_9BACI ATP synthase C chain EC=3.6.3.-
          Length = 70

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFM 69
          S+TVEGIARQPEA+  LQTTMFIGVALVEA+PII VV+AFM
Sbjct: 26 SRTVEGIARQPEARGMLQTTMFIGVALVEAIPIIAVVIAFM 66


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 229,180,474
Number of extensions: 5143272
Number of successful extensions: 23292
Number of sequences better than 1.0e-05: 217
Number of HSP's gapped: 23293
Number of HSP's successfully gapped: 217
Length of query: 75
Length of database: 3,060,696,203
Length adjustment: 46
Effective length of query: 29
Effective length of database: 2,627,329,513
Effective search space: 76192555877
Effective search space used: 76192555877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)