BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0008.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7K0.1 B3K7K0_9BACI ATP synthase B chain 211 1e-53 B1DEH4.1 B1DEH4_9BACL ATP synthase B chain 160 4e-38 A8VSP7.1 A8VSP7_9BACI ATP synthase B chain 124 3e-27 P22481.3 ATPF_BACPF ATP synthase subunit b 120 3e-26 Q9K6H1.1 ATPF_BACHD ATP synthase subunit b 118 2e-25 >B3K7K0.1 B3K7K0_9BACI ATP synthase B chain Length = 162 Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 106/153 (69%), Positives = 131/153 (85%) Query: 1 VLAIIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQT 60 V+ IIAF ILY LL K+AF LF +ME+RRELV+ QMNEAAQTR+QA +YVEEQK+AL+ Sbjct: 9 VITIIAFVILYLLLQKFAFSKLFGIMEQRRELVMSQMNEAAQTRQQATAYVEEQKKALEQ 68 Query: 61 ARKEALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAA 120 AR++A EIIE+SRQTS+KQ EQ+++QAK EA R+K EAVRDI+NEK KAVEELR E+G+ Sbjct: 69 ARQDAHEIIERSRQTSNKQAEQIMEQAKEEAIRLKSEAVRDIENEKKKAVEELRSEIGSV 128 Query: 121 SVKIASKLLQKEVSSDPEQEALVDQYLKEVGGR 153 SVKIA+KL+++EV +D QE LVDQYLKEVGGR Sbjct: 129 SVKIATKLIEREVKNDQAQEELVDQYLKEVGGR 161 >B1DEH4.1 B1DEH4_9BACL ATP synthase B chain Length = 160 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 84/153 (54%), Positives = 120/153 (78%), Gaps = 1/153 (0%) Query: 1 VLAIIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQT 60 V+ ++AF IL +LL +YAFGPL SVME+RR+ V +Q+ A ++++A +E+QKQALQ Sbjct: 9 VIQLVAFLILLYLLKRYAFGPLLSVMEQRRQYVAEQIANAETSKKEAEQQLEQQKQALQE 68 Query: 61 ARKEALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAA 120 ARKEA +IIEQ++ TS+KQ + +I AK E++R+K+EAV+DI++EKNKAV LR E+G Sbjct: 69 ARKEAYDIIEQAKATSTKQADDIIQVAKSESTRLKDEAVKDIESEKNKAVAALREEVGGI 128 Query: 121 SVKIASKLLQKEVSSDPEQEALVDQYLKEVGGR 153 SVKIASK+++K+V + QE LV+QYLKEVG + Sbjct: 129 SVKIASKIIEKQV-DEKSQEQLVNQYLKEVGSK 160 >A8VSP7.1 A8VSP7_9BACI ATP synthase B chain Length = 165 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 1 VLAIIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQT 60 V I+AF L +LL +YAFGP+ +MEKR + V Q+ A + R++A Y++EQ++A+QT Sbjct: 13 VYQILAFLFLMWLLKRYAFGPIMDMMEKREKHVADQIKSAEKNRDEAEQYLKEQREAIQT 72 Query: 61 ARKEALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAA 120 AR+EA EI+E +++ S +Q ++ A+ EA R+KE A +I +EK +AV LR ++ Sbjct: 73 ARQEAKEIVENAKKMSDQQAADIVASARTEAERLKETAKAEINSEKEQAVSALREQVSTL 132 Query: 121 SVKIASKLLQKEVSSDPEQEALVDQYLKEVGG 152 SV +ASK+++KE+ + EQE L+ + LKEVGG Sbjct: 133 SVLVASKVIEKEL-DEKEQEKLIQETLKEVGG 163 >P22481.3 ATPF_BACPF ATP synthase subunit b Length = 163 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 4 IIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQTARK 63 ++AF +L F L+K+A PL +MEKR +++ +Q++ A + R+ + +++ EQ+QAL+ AR Sbjct: 14 LLAFSVLLFFLSKFALKPLLGIMEKREQMINEQISSAEKNRKDSEAFIAEQRQALEQARM 73 Query: 64 EALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAASVK 123 EA EII+ +++ S +Q + ++ A+ +A RIKE AV +IQ EK +AV LR ++ SV Sbjct: 74 EANEIIQNAKKLSEQQGQDIVKAARNDAERIKESAVAEIQREKEQAVSALREQVAGLSVL 133 Query: 124 IASKLLQKEVSSDPEQEALVDQYLKEVG 151 IA+K+++KE+ ++ EQE LV +YLKEVG Sbjct: 134 IATKVIEKEL-NEAEQEKLVQEYLKEVG 160 >Q9K6H1.1 ATPF_BACHD ATP synthase subunit b Length = 162 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 109/148 (73%), Gaps = 1/148 (0%) Query: 4 IIAFGILYFLLNKYAFGPLFSVMEKRRELVLQQMNEAAQTREQAVSYVEEQKQALQTARK 63 +IAF +L +LL+K+A PL VMEKR +++ Q+++A + R+ A Y+E+Q+ A++ AR+ Sbjct: 13 LIAFCVLLWLLSKFALKPLMGVMEKREQMINDQIDQADKDRKAAQEYLEQQRLAVEKARE 72 Query: 64 EALEIIEQSRQTSSKQTEQLIDQAKVEASRIKEEAVRDIQNEKNKAVEELRGELGAASVK 123 EA EI++++++ S +Q +++++ A+ E R+KE A+ +IQ EK +AV LR ++ + SV Sbjct: 73 EAQEIVQKAKKLSEQQGQEIVEAARAEGERLKEAALAEIQREKEQAVASLREQVASLSVL 132 Query: 124 IASKLLQKEVSSDPEQEALVDQYLKEVG 151 IA+K+++KE+ + EQE L+ +YLKEVG Sbjct: 133 IATKVIEKEL-DEKEQEKLIAEYLKEVG 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.126 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 683,633,602 Number of extensions: 21446658 Number of successful extensions: 220782 Number of sequences better than 1.0e-05: 1254 Number of HSP's gapped: 220071 Number of HSP's successfully gapped: 1254 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 125 (52.8 bits)