BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0007.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7J9.1 B3K7J9_9BACI ATP synthase 228 2e-58 B1DEH3.1 B1DEH3_9BACL ATP synthase 178 2e-43 C2ZX58.1 C2ZX58_BACCE ATP synthase F1, delta subunit 142 1e-32 Q4MIB2.1 Q4MIB2_BACCE ATP synthase 141 2e-32 B5V8U6.1 B5V8U6_BACCE ATP synthase 141 2e-32 >B3K7J9.1 B3K7J9_9BACI ATP synthase Length = 181 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 106/178 (59%), Positives = 148/178 (83%) Query: 1 MSQDTIVAKRYAKALFEVAFEERQIMEVEEDLKSLVAALNSDAELQRFISSPRITGENKL 60 MSQ+T+ AKRYA+ALFEVA ++++ +EVEE+L+++V A+ DA++Q+FI++P + K+ Sbjct: 1 MSQNTVAAKRYARALFEVAAQQQKGLEVEEELRAVVHAIEGDADIQKFIATPNVPQSVKM 60 Query: 61 AVLKKALEGKLSGAVINTLEILMKRGRMDILPDLLDSYIKIEGDSLGLADATVYSTYTLS 120 V+ +AL GK+S V+NT+E+L+ RGR ++ +LL+SY+KI+G SLGLADATVYSTY LS Sbjct: 61 NVISQALAGKVSQPVLNTIELLLDRGRAEMFAELLNSYVKIQGASLGLADATVYSTYPLS 120 Query: 121 SSEQTQVAEEFGRLSGRNIRITNVVDKSLLGGLKVIIGDTLYDGSLSGKLTRLEKSFN 178 E+ QVA EFG+L+ + IR+TNVVD+SLLGGLKV+IGD LYDGS++GKL RLEKSFN Sbjct: 121 DQEKEQVASEFGQLAHQKIRVTNVVDESLLGGLKVVIGDKLYDGSIAGKLERLEKSFN 178 >B1DEH3.1 B1DEH3_9BACL ATP synthase Length = 179 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 127/178 (71%) Query: 1 MSQDTIVAKRYAKALFEVAFEERQIMEVEEDLKSLVAALNSDAELQRFISSPRITGENKL 60 MS+DT+VAKRYAKALFE+A E+ + E E+ LK +V L +DA+ ++F+ P I E K+ Sbjct: 1 MSRDTVVAKRYAKALFELANEQSIVSETEDQLKLIVQGLKNDADARKFLELPSIEPEKKI 60 Query: 61 AVLKKALEGKLSGAVINTLEILMKRGRMDILPDLLDSYIKIEGDSLGLADATVYSTYTLS 120 AVLK A +S V++TLE+++ RGR +++ D+ D+Y KI G++LG A A VY+ ++LS Sbjct: 61 AVLKGAFGDHVSALVLHTLELILVRGRQELISDVYDAYTKIAGEALGQAHAVVYTAHSLS 120 Query: 121 SSEQTQVAEEFGRLSGRNIRITNVVDKSLLGGLKVIIGDTLYDGSLSGKLTRLEKSFN 178 +SE +V FG+LSG+ I +V LLGG++V IGD LYDGSLSGKL RL+KSF Sbjct: 121 ASELAEVEVSFGKLSGKKIVAEQIVKPDLLGGVQVRIGDRLYDGSLSGKLERLQKSFK 178 >C2ZX58.1 C2ZX58_BACCE ATP synthase F1, delta subunit Length = 180 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 2/173 (1%) Query: 6 IVAKRYAKALFEVAFEERQIMEVEEDLKSLVAALNSDAELQRFISSPRITGENKLAVLKK 65 IVAKRYA ALF++A E+ + EE+L+ + + EL F++ P I+ E K L Sbjct: 5 IVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLAN 64 Query: 66 ALEGKLSGAVINTLEILMKRGRMDILPDLLDSYIKIEGDSLGLADATVYSTYTLSSSEQT 125 G +S +++NTL IL+ R+DILP++ D Y+ + + +ADATVYST LS E+ Sbjct: 65 VF-GSVSESILNTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKL 123 Query: 126 QVAEEFGRLSGRN-IRITNVVDKSLLGGLKVIIGDTLYDGSLSGKLTRLEKSF 177 VAE F + +G++ IR+ NVVD+ LLGG+KV IG+ +YDGSL GKL R+++ Sbjct: 124 NVAEAFAKRTGKDAIRVKNVVDEDLLGGIKVRIGNRIYDGSLQGKLARIQREL 176 >Q4MIB2.1 Q4MIB2_BACCE ATP synthase Length = 180 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 112/173 (64%), Gaps = 2/173 (1%) Query: 6 IVAKRYAKALFEVAFEERQIMEVEEDLKSLVAALNSDAELQRFISSPRITGENKLAVLKK 65 IVAKRYA ALF++A E+ + EE+L+ + + EL F++ P I+ E K L Sbjct: 5 IVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLAN 64 Query: 66 ALEGKLSGAVINTLEILMKRGRMDILPDLLDSYIKIEGDSLGLADATVYSTYTLSSSEQT 125 G +S +++NTL IL+ R+DILP++ D Y+ + + +ADATVYST LS E+ Sbjct: 65 VF-GSVSESILNTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKL 123 Query: 126 QVAEEFGRLSGRN-IRITNVVDKSLLGGLKVIIGDTLYDGSLSGKLTRLEKSF 177 +AE F + +G++ IR+ NVVD+ LLGG+KV IG+ +YDGSL GKL R+++ Sbjct: 124 NIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVRIGNRIYDGSLQGKLARIQREL 176 >B5V8U6.1 B5V8U6_BACCE ATP synthase Length = 180 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 112/173 (64%), Gaps = 2/173 (1%) Query: 6 IVAKRYAKALFEVAFEERQIMEVEEDLKSLVAALNSDAELQRFISSPRITGENKLAVLKK 65 IVAKRYA ALF++A E+ + EE+L+ + + EL F++ P I+ E K L Sbjct: 5 IVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLAN 64 Query: 66 ALEGKLSGAVINTLEILMKRGRMDILPDLLDSYIKIEGDSLGLADATVYSTYTLSSSEQT 125 G +S +++NTL IL+ R+DILP++ D Y+ + + +ADATVYST LS E+ Sbjct: 65 VF-GSVSESILNTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSTRLLSEEEKL 123 Query: 126 QVAEEFGRLSGRN-IRITNVVDKSLLGGLKVIIGDTLYDGSLSGKLTRLEKSF 177 +AE F + +G++ IR+ NVVD+ LLGG+KV IG+ +YDGSL GKL R+++ Sbjct: 124 NIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVRIGNRIYDGSLQGKLARIQREL 176 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 932,271,672 Number of extensions: 34131641 Number of successful extensions: 84011 Number of sequences better than 1.0e-05: 1399 Number of HSP's gapped: 83041 Number of HSP's successfully gapped: 1399 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)