BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0006.p (503 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7J8.1 B3K7J8_9BACI ATP synthase subunit alpha 898 0.0 B1DEH2.1 B1DEH2_9BACL ATP synthase subunit alpha 889 0.0 Q71CG5.1 Q71CG5_9BACI ATP synthase subunit alpha 811 0.0 C3IZ40.1 C3IZ40_9BACI ATP synthase F1, alpha subunit EC=3.6.3.14 788 0.0 B7Y7F2.1 B7Y7F2_9BACI ATP synthase subunit alpha 788 0.0 >B3K7J8.1 B3K7J8_9BACI ATP synthase subunit alpha Length = 507 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/503 (85%), Positives = 473/503 (94%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 LSIRPEEIS+LIKSQIE+YK+DI V+E+GTVIQV DGIARVYGLENAM+GELLEF NGV Sbjct: 4 LSIRPEEISTLIKSQIEEYKSDITVSEVGTVIQVSDGIARVYGLENAMSGELLEFQNGVF 63 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 G+ALNLEESNVGVVILG Y+EI+EGDQVKRTG+IM+VPVGEA+LGRVVN LGQPLDGKGP Sbjct: 64 GLALNLEESNVGVVILGPYSEIKEGDQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGKGP 123 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I T FRPVE++APGVIDRKSVHEPMQTG+KAIDAMVPIGRGQRELIIGDRQTGKT +AI Sbjct: 124 IEATAFRPVESSAPGVIDRKSVHEPMQTGIKAIDAMVPIGRGQRELIIGDRQTGKTTVAI 183 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D I+NQKG+G+KCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEP+PL YIAPY Sbjct: 184 DTILNQKGSGVKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPAPLQYIAPY 243 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AGCAMGEYFMYKGEH L+IYDDLSKQA+AYRELSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 244 AGCAMGEYFMYKGEHALIIYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 303 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKL+D LGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLES+LF SGQRPAINVG Sbjct: 304 AAKLNDELGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESELFYSGQRPAINVG 363 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 ISVSRVGGSAQIKAMKKVAG ++LDLAQYRELQAFSQFGSDLDKST ARLNRGAR+MEIL Sbjct: 364 ISVSRVGGSAQIKAMKKVAGGMKLDLAQYRELQAFSQFGSDLDKSTLARLNRGARLMEIL 423 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQGVNQPLSVE QV+SLY AVKG++DDI V DV+RFE EFLA++ SN + +SI+DTKD Sbjct: 424 KQGVNQPLSVEQQVVSLYAAVKGYIDDIEVADVRRFESEFLAFIGSNKPEILQSITDTKD 483 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 LT+DNE ALK AI++FK+GFA S Sbjct: 484 LTSDNENALKAAIDQFKKGFAAS 506 >B1DEH2.1 B1DEH2_9BACL ATP synthase subunit alpha Length = 507 Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/503 (85%), Positives = 472/503 (93%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 LSIRP+EIS+LIK QIEQYK++I+V ++GTVI VGDGIARV+GLENAM GELLEFSNGVV Sbjct: 4 LSIRPDEISTLIKQQIEQYKSEIQVVDVGTVINVGDGIARVHGLENAMQGELLEFSNGVV 63 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMALNLEESNVGVVILG YT+IREGDQVKRTG+IM+VPVGE +LGRVVN LGQPLDGKGP Sbjct: 64 GMALNLEESNVGVVILGPYTDIREGDQVKRTGRIMEVPVGEELLGRVVNPLGQPLDGKGP 123 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I TT+FR +E+ APGVIDRKSVHEPMQTG+KAIDAMVP+GRGQRELIIGDRQTGKTAIAI Sbjct: 124 INTTQFRAIESPAPGVIDRKSVHEPMQTGIKAIDAMVPVGRGQRELIIGDRQTGKTAIAI 183 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 DAIINQKGNG+KCIYVA+GQKQSTVA VVETLR+HGAL+YTI+VTA ASEP+PLL++APY Sbjct: 184 DAIINQKGNGVKCIYVAVGQKQSTVAGVVETLRKHGALDYTIIVTAGASEPAPLLFLAPY 243 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AGC+MGEYFMYKGEHVLVIYDDLSKQA+AYRELSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 244 AGCSMGEYFMYKGEHVLVIYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 303 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLF SGQRPA+NVG Sbjct: 304 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFYSGQRPAVNVG 363 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 ISVSRVGGSAQIKAMKKVAG+LRLDLA YRELQAFSQFGSDLDK T ARLNRGAR MEIL Sbjct: 364 ISVSRVGGSAQIKAMKKVAGTLRLDLAAYRELQAFSQFGSDLDKGTLARLNRGARTMEIL 423 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQGVNQP+ VE QVIS+Y+AVKGHLD+IPV D++RFEKEFLA++DSN + +SI TKD Sbjct: 424 KQGVNQPMPVEKQVISIYSAVKGHLDEIPVADIQRFEKEFLAFLDSNHPEIGESIRTTKD 483 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L ADNE AL +AI KFK+GF+ + Sbjct: 484 LVADNEKALVDAIAKFKKGFSVT 506 >Q71CG5.1 Q71CG5_9BACI ATP synthase subunit alpha Length = 502 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/503 (78%), Positives = 445/503 (88%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIRPEEIS+LIK QIE Y+AD+EV E+GTVIQVGDGIARV+GLE MAGELLEF NGV+ Sbjct: 1 MSIRPEEISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVM 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMA NLEE NVGVVILG YTEIREG QVKRTG+IM+VPVGEA+LGRVVN LGQPLDG+GP Sbjct: 61 GMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I T E+RP+E+ APGV+DRKSVHEP+QTG+KAID+M+PIGRGQRELIIGDRQTGKT IAI Sbjct: 121 IETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAI 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQKG + CIYVAIGQKQSTVA VVETLR+H AL+YTIVVTASASEP+PLLY+APY Sbjct: 181 DTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AGCAMGEYFMYKG+H LV+YDDLSKQA+AYRELSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 241 AGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSD GGGSLTALPFIETQA DVSAYIPTNVISITDGQIFLESDLF SG RPA+NVG Sbjct: 301 AAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 ISVSRVGG+AQIKAMKKVAG+LRLDLAQYRELQAF+QFGSDLDK+TQA+LNRG R +EIL Sbjct: 361 ISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEIL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQ ++P+ VE QVIS+Y G +DDIPV+DV+RFE+E L++M +N ++ I T + Sbjct: 421 KQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGE 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L E L AIE+FK+GF S Sbjct: 481 LPDTKE--LDAAIEEFKKGFTPS 501 >C3IZ40.1 C3IZ40_9BACI ATP synthase F1, alpha subunit EC=3.6.3.14 Length = 502 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/503 (74%), Positives = 446/503 (88%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIR EEIS+LIK QIE Y++ I+V+++GTVIQVGDGIAR +GL+N M+GEL+EF+NGV+ Sbjct: 1 MSIRAEEISALIKQQIENYESQIQVSDVGTVIQVGDGIARAHGLDNVMSGELVEFANGVM 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMALNLEE+NVG+VILG YT I+EGD+V+RTG+IM+VPVGEA++GRVVN LGQP+DG GP Sbjct: 61 GMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGEALIGRVVNPLGQPVDGLGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 + TTE RP+E+ APGV+DR+SVHEP+QTG+KAIDA+VPIGRGQRELIIGDRQTGKT++AI Sbjct: 121 VETTETRPIESPAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAI 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQK M CIYVAIGQK+STV VVETLR+HGAL+YTIVVTASAS+P+PLL++APY Sbjct: 181 DTIINQKDQNMICIYVAIGQKESTVRTVVETLRKHGALDYTIVVTASASQPAPLLFLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AG AMGEYFMYKG+HVLV+YDDLSKQA+AYRELSLLLRRPPGREA+PGD+FYLHSRLLER Sbjct: 241 AGVAMGEYFMYKGQHVLVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDA GGGSLTALPF+ETQA D+SAYIPTNVISITDGQIFL+SDLF SG RPAIN G Sbjct: 301 AAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 +SVSRVGG+AQIKAMKKVAG+LRLDLA YREL+AF+QFGSDLDK+TQA+L RGAR +E+L Sbjct: 361 LSVSRVGGAAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQAKLARGARTVEVL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQ ++QP+ VE QV+ +Y +G LDDIPV+DV+RFEKEF ++D N + + I TKD Sbjct: 421 KQDLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKD 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L NE L +AIE FK+ F S Sbjct: 481 LP--NEDDLNKAIEAFKKTFVVS 501 >B7Y7F2.1 B7Y7F2_9BACI ATP synthase subunit alpha Length = 502 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/503 (74%), Positives = 446/503 (88%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIR EEIS+LIK QIE Y++ I+V+++GTVIQVGDGIAR +GL+N M+GEL+EF+NGV+ Sbjct: 1 MSIRAEEISALIKQQIENYESQIQVSDVGTVIQVGDGIARAHGLDNVMSGELVEFANGVM 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMALNLEE+NVG+VILG YT I+EGD+V+RTG+IM+VPVGEA++GRVVN LGQP+DG GP Sbjct: 61 GMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGEALIGRVVNPLGQPVDGLGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 + TTE RP+E+ APGV+DR+SVHEP+QTG+KAIDA+VPIGRGQRELIIGDRQTGKT++AI Sbjct: 121 VETTETRPIESPAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAI 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQK M CIYVAIGQK+STV VVETLR+HGAL+YTIVVTASAS+P+PLL++APY Sbjct: 181 DTIINQKDQNMICIYVAIGQKESTVRTVVETLRKHGALDYTIVVTASASQPAPLLFLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AG AMGEYFMYKG+HVLV+YDDLSKQA+AYRELSLLLRRPPGREA+PGD+FYLHSRLLER Sbjct: 241 AGVAMGEYFMYKGQHVLVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDA GGGSLTALPF+ETQA D+SAYIPTNVISITDGQIFL+SDLF SG RPAIN G Sbjct: 301 AAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 +SVSRVGG+AQIKAMKKVAG+LRLDLA YREL+AF+QFGSDLDK+TQA+L RGAR +E+L Sbjct: 361 LSVSRVGGAAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQAKLARGARTVEVL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQ ++QP+ VE QV+ +Y +G LDDIPV+DV+RFEKEF ++D N + + I TKD Sbjct: 421 KQDLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKD 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L NE L +AIE FK+ F S Sbjct: 481 LP--NEDDLNKAIEAFKKTFVVS 501 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,702,962,280 Number of extensions: 111484556 Number of successful extensions: 352902 Number of sequences better than 1.0e-05: 13781 Number of HSP's gapped: 341813 Number of HSP's successfully gapped: 13802 Length of query: 503 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 363 Effective length of database: 1,741,754,103 Effective search space: 632256739389 Effective search space used: 632256739389 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)