BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0005.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DEH0.1 B1DEH0_9BACL ATP synthase gamma chain 440 e-122 B3K7J7.1 B3K7J7_9BACI ATP synthase gamma chain 423 e-117 C0Z777.1 ATPG_BREBN ATP synthase gamma chain 393 e-108 Q71CG4.1 Q71CG4_9BACI ATP synthase gamma chain 378 e-103 A6CT55.1 A6CT55_9BACI ATP synthase gamma chain 347 6e-94 >B1DEH0.1 B1DEH0_9BACL ATP synthase gamma chain Length = 286 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/287 (73%), Positives = 244/287 (85%), Gaps = 5/287 (1%) Query: 1 MRDIKRQIKSVQNTRQITKAMEMVAASKLRKAQEKAEAARPYSEKLKEVVASIAAGSQDA 60 MRDIKR+IKS QN +QITKAMEMVAASKLR+AQE + ARPYS+KLKEVVASIAAGS+ Sbjct: 5 MRDIKREIKSKQNMKQITKAMEMVAASKLRRAQEASTKARPYSDKLKEVVASIAAGSKGV 64 Query: 61 THPMLVSRPVKKTAYLIVTSDRGLAGGYNANILRKVTMLLAERHKSKDEYALFVIGRKGR 120 HPML +RPV+KT YL++TSDRGLAGGYNAN+LRKVT + E+HKS DEY LFVIGRKGR Sbjct: 65 KHPMLETRPVQKTGYLVITSDRGLAGGYNANVLRKVTQTIREKHKSNDEYVLFVIGRKGR 124 Query: 121 DFLRRREYPIVEEITELSDTPKFADIKSIAYSAVQQFETGVYDELYLCYNRFVNAISQVP 180 D+ RRR PI++E+ LSD+P FADIKS+AY+AV+ F G YDELY+CYN+FVNAI+Q+P Sbjct: 125 DYFRRRNMPIIDEVIGLSDSPTFADIKSVAYNAVKMFSEGKYDELYICYNQFVNAITQIP 184 Query: 181 TVDRLLPMEPMENQEKKAEGLHATYEYEPSAEGVLEVLLPKYAETLIYSAILDGKASELG 240 T RLLP+ QE G +YEYEPS EGVLEVLLPKYAETLIYSA+LDGKASE G Sbjct: 185 TETRLLPL-----QEVSGNGPVTSYEYEPSPEGVLEVLLPKYAETLIYSAVLDGKASEQG 239 Query: 241 AKMTAMGSATKNASKMIGNLTLTYNRARQAAITQEITEIVAGANAQS 287 A+MTAMGSATKNA+KMI LTLTYNRARQAAITQEI+EIVAGANAQ+ Sbjct: 240 ARMTAMGSATKNANKMINQLTLTYNRARQAAITQEISEIVAGANAQA 286 >B3K7J7.1 B3K7J7_9BACI ATP synthase gamma chain Length = 286 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/286 (72%), Positives = 241/286 (84%), Gaps = 5/286 (1%) Query: 1 MRDIKRQIKSVQNTRQITKAMEMVAASKLRKAQEKAEAARPYSEKLKEVVASIAAGSQDA 60 +RDIKRQIKSVQNTRQITKAMEMVAA+KLR+AQEKA +A PYSEKLKEVV SIAAG++ Sbjct: 5 LRDIKRQIKSVQNTRQITKAMEMVAAAKLRRAQEKATSALPYSEKLKEVVGSIAAGTKGI 64 Query: 61 THPMLVSRPVKKTAYLIVTSDRGLAGGYNANILRKVTMLLAERHKSKDEYALFVIGRKGR 120 +HPML R VKKT YL++TSDRGLAG N+NILRKV+ +AERH+SKDEY LFVIGRKGR Sbjct: 65 SHPMLEKREVKKTGYLVITSDRGLAGASNSNILRKVSNFIAERHQSKDEYCLFVIGRKGR 124 Query: 121 DFLRRREYPIVEEITELSDTPKFADIKSIAYSAVQQFETGVYDELYLCYNRFVNAISQVP 180 D+ RRR P+VEE+T+LSD+P +ADIK+IA +AV Q+E G DELYLCYN+FVNA++Q+ Sbjct: 125 DYFRRRGLPVVEELTDLSDSPTYADIKTIANAAVHQYELGQIDELYLCYNQFVNALTQLQ 184 Query: 181 TVDRLLPMEPMENQEKKAEGLHATYEYEPSAEGVLEVLLPKYAETLIYSAILDGKASELG 240 + +LLPME + E YEYEPS EGVLEVLLPKYAETLI+SA+L+ KASELG Sbjct: 185 EISKLLPMENIGGGEN-----LTGYEYEPSPEGVLEVLLPKYAETLIFSAMLNAKASELG 239 Query: 241 AKMTAMGSATKNASKMIGNLTLTYNRARQAAITQEITEIVAGANAQ 286 AKMTAMG+ATKNASK+I L LTYNRARQAAITQEI+EIV GANAQ Sbjct: 240 AKMTAMGAATKNASKLINELNLTYNRARQAAITQEISEIVGGANAQ 285 >C0Z777.1 ATPG_BREBN ATP synthase gamma chain Length = 287 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/287 (65%), Positives = 237/287 (82%), Gaps = 4/287 (1%) Query: 1 MRDIKRQIKSVQNTRQITKAMEMVAASKLRKAQEKAEAARPYSEKLKEVVASIAAGSQDA 60 +R+I+R IKS ++ RQITKAM+MVAA+KLR+ Q+KAEAARPY++K++EV+ASIA+G+ + Sbjct: 5 IREIRRSIKSKKDMRQITKAMKMVAAAKLRRNQDKAEAARPYADKIQEVIASIASGTSGS 64 Query: 61 THPMLVSRPVKKTAYLIVTSDRGLAGGYNANILRKVTMLLAERHKSKDEYALFVIGRKGR 120 HPML +RPVKKT Y+++TSDRGLAGGYNANILRKV + E+HKSKDEY +FVIGRKGR Sbjct: 65 KHPMLQNRPVKKTGYIVITSDRGLAGGYNANILRKVVNTINEKHKSKDEYGIFVIGRKGR 124 Query: 121 DFLRRREYPIVEEITELSDTPKFADIKSIAYSAVQQFETGVYDELYLCYNRFVNAISQVP 180 DF +R YP+++E+T L +P FADIK IA +AVQ FE DELYLCYN+F +AISQ+P Sbjct: 125 DFFSKRNYPLLDEVTGLPTSPAFADIKKIAGAAVQMFENEQIDELYLCYNKFQSAISQIP 184 Query: 181 TVDRLLPMEPMENQEKKAEGLHATYEYEPSAEGVLEVLLPKYAETLIYSAILDGKASELG 240 TV +LLP+E E+ +A YEYEPS+E VL LLPKYAETL+YSA+L+ KASE G Sbjct: 185 TVKQLLPLEAPESNNARA----INYEYEPSSEEVLADLLPKYAETLVYSALLEAKASEEG 240 Query: 241 AKMTAMGSATKNASKMIGNLTLTYNRARQAAITQEITEIVAGANAQS 287 ++MTAMG+AT NA+ MI LTL+YNRARQAAITQEI+EIVAGANAQ+ Sbjct: 241 SRMTAMGNATDNATDMINRLTLSYNRARQAAITQEISEIVAGANAQA 287 >Q71CG4.1 Q71CG4_9BACI ATP synthase gamma chain Length = 286 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/285 (63%), Positives = 230/285 (80%), Gaps = 4/285 (1%) Query: 1 MRDIKRQIKSVQNTRQITKAMEMVAASKLRKAQEKAEAARPYSEKLKEVVASIAAGSQDA 60 MR+IKR+I+SV+NTRQITKAM+MVAA+KLR+AQE AE ARPY++K+KEV++SIAAG++D Sbjct: 4 MREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDF 63 Query: 61 THPMLVSRPVKKTAYLIVTSDRGLAGGYNANILRKVTMLLAERHKSKDEYALFVIGRKGR 120 +HPML +RPVKKT Y+++TSDRGLAG YNANILR V+ + ERH+SKDEY +F +GRKGR Sbjct: 64 SHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGR 123 Query: 121 DFLRRREYPIVEEITELSDTPKFADIKSIAYSAVQQFETGVYDELYLCYNRFVNAISQVP 180 DF ++R YP+VEE+T +SDTP +I+ IA SA+ F +D+L + YN FV+ I Q P Sbjct: 124 DFFKKRGYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQRP 183 Query: 181 TVDRLLPMEPMENQEKKAEGLHATYEYEPSAEGVLEVLLPKYAETLIYSAILDGKASELG 240 +LLP+ E+ +G + YEYEP +E VLEVLLPKYAETLIYSA+LD KASE G Sbjct: 184 VEKQLLPL----TSEEVLDGPVSAYEYEPDSESVLEVLLPKYAETLIYSALLDAKASEFG 239 Query: 241 AKMTAMGSATKNASKMIGNLTLTYNRARQAAITQEITEIVAGANA 285 A+MTAMG+AT NA++M+ LTL +NRARQAAITQEI EIVAGANA Sbjct: 240 ARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANA 284 >A6CT55.1 A6CT55_9BACI ATP synthase gamma chain Length = 285 Score = 347 bits (891), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 168/285 (58%), Positives = 218/285 (76%), Gaps = 5/285 (1%) Query: 1 MRDIKRQIKSVQNTRQITKAMEMVAASKLRKAQEKAEAARPYSEKLKEVVASIAAGSQDA 60 +RDIK +I S + T QITKAM+MV+ASK+ +A+ A+A PY EK++EVV+SIA GS+DA Sbjct: 4 LRDIKSRITSTKKTSQITKAMQMVSASKMARAETNAKAFVPYMEKIQEVVSSIALGSKDA 63 Query: 61 THPMLVSRPVKKTAYLIVTSDRGLAGGYNANILRKVTMLLAERHKSKDEYALFVIGRKGR 120 +HPMLVSRPVKKT YL++TSDRGLAG YN+N++R V + ERH S DE+A+ IGR GR Sbjct: 64 SHPMLVSRPVKKTGYLVITSDRGLAGAYNSNVIRLVHNTIKERHSSNDEFAIIAIGRIGR 123 Query: 121 DFLRRREYPIVEEITELSDTPKFADIKSIAYSAVQQFETGVYDELYLCYNRFVNAISQVP 180 DF ++R+Y ++E IT + D P F+DIK IA AV F G YDELYL YN +V+AI Q Sbjct: 124 DFFQKRDYNVIEGITGIPDQPSFSDIKDIATKAVGMFSDGAYDELYLYYNHYVSAIQQDV 183 Query: 181 TVDRLLPMEPMENQEKKAEGLHATYEYEPSAEGVLEVLLPKYAETLIYSAILDGKASELG 240 T ++LP+ +++ K +YE+EPSAE +LEVLLP+YAE+LIY A+LDGKASE Sbjct: 184 TEKKVLPLTDLDSSAKL-----TSYEFEPSAEDILEVLLPQYAESLIYGALLDGKASEHA 238 Query: 241 AKMTAMGSATKNASKMIGNLTLTYNRARQAAITQEITEIVAGANA 285 A+M+AM SAT NA ++I +L+L+YNRARQAAITQEITEIV GA A Sbjct: 239 ARMSAMKSATDNAKELINSLSLSYNRARQAAITQEITEIVGGAAA 283 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.128 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,429,392,828 Number of extensions: 55617367 Number of successful extensions: 135131 Number of sequences better than 1.0e-05: 1874 Number of HSP's gapped: 131251 Number of HSP's successfully gapped: 1904 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)