BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0004.p (465 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7J6.1 B3K7J6_9BACI ATP synthase F1, beta subunit 752 0.0 B1DEG9.1 B1DEG9_9BACL ATP synthase F1, beta subunit 730 0.0 Q71CG3.1 Q71CG3_9BACI ATP synthase subunit beta 712 0.0 C2WER1.1 C2WER1_BACCE ATP synthase subunit beta 686 0.0 C0Z776.1 ATPB_BREBN ATP synthase subunit beta EC=3.6.3.14 686 0.0 >B3K7J6.1 B3K7J6_9BACI ATP synthase F1, beta subunit Length = 466 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/466 (80%), Positives = 400/466 (85%), Gaps = 1/466 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 M KGRVVSI G VVDIEFERG LPEIFNA+KI +L G + +LTLEVSNHLGDNLVRCI Sbjct: 1 MKKGRVVSITGAVVDIEFERGHLPEIFNAVKIEATLEGGRSVDLTLEVSNHLGDNLVRCI 60 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD-RNPIHRLAP 119 AMSSTDGLVRG+EA+D G PI+VPVG ATLGRVFNVLG PIDN VV++ NPIHR AP Sbjct: 61 AMSSTDGLVRGIEAVDLGRPITVPVGSATLGRVFNVLGEPIDNAGAVVSEVNNPIHREAP 120 Query: 120 TFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGIS 179 +DELSTQAE+LETGIKVIDLLAPY TV IQELINNIAQEHGGIS Sbjct: 121 AYDELSTQAEMLETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVAIQELINNIAQEHGGIS 180 Query: 180 VFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDVE 239 VFAGVGERTREGNDLYHEM+DSGVI KTAMVFGQMNEPPGARLRVALTGLTMAEYFRD E Sbjct: 181 VFAGVGERTREGNDLYHEMSDSGVINKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDQE 240 Query: 240 GRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI 299 G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLA+EMG+LQERITSTKKGSVTSI Sbjct: 241 GKDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLASEMGRLQERITSTKKGSVTSI 300 Query: 300 QAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEEH 359 QAIYV HLDATTNLERKISE GI+PAVDPLASSSRILAPEIVGEEH Sbjct: 301 QAIYVPADDYTDPAPATTFAHLDATTNLERKISEMGIYPAVDPLASSSRILAPEIVGEEH 360 Query: 360 YNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTGF 419 YNVAQGVK++L RY ELQDIIAILGMDELSEEDK IV RAR+V+RFLSQ FHVAEQF G Sbjct: 361 YNVAQGVKKILARYNELQDIIAILGMDELSEEDKAIVGRARRVQRFLSQAFHVAEQFNGI 420 Query: 420 KGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 GKYVP+KETVRSFKEILEGKHD LPEAAFLFVGTIEEAVEKAK++ Sbjct: 421 PGKYVPVKETVRSFKEILEGKHDHLPEAAFLFVGTIEEAVEKAKTL 466 >B1DEG9.1 B1DEG9_9BACL ATP synthase F1, beta subunit Length = 467 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/467 (78%), Positives = 396/467 (84%), Gaps = 2/467 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVT-SLANGSTSELTLEVSNHLGDNLVRC 59 M KGRVVS+MGPVVD+EFERG LPEI NA+KIV + A G LTLEV+ HLGDNLVR Sbjct: 1 MKKGRVVSVMGPVVDLEFERGNLPEILNAVKIVQQAPAGGIDINLTLEVAVHLGDNLVRA 60 Query: 60 IAMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVADRN-PIHRLA 118 +AMS+TDGLVRG+EA+D G PI++PVG ATLGRVFNVLG PID E V++ N PIHR A Sbjct: 61 VAMSTTDGLVRGMEAVDTGAPITIPVGAATLGRVFNVLGEPIDQAGEAVSETNLPIHRQA 120 Query: 119 PTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGI 178 P FDELSTQ+EILETGIKVIDLLAPYA TVTIQELINNIAQEHGGI Sbjct: 121 PAFDELSTQSEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVTIQELINNIAQEHGGI 180 Query: 179 SVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDV 238 SVFAGVGERTREGNDLYHEM DSGV+ KTAMVFGQMNEPPGAR RVALTGLTMAEYFRD Sbjct: 181 SVFAGVGERTREGNDLYHEMKDSGVLPKTAMVFGQMNEPPGARQRVALTGLTMAEYFRDA 240 Query: 239 EGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS 298 EG+D LLF+DNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS Sbjct: 241 EGKDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS 300 Query: 299 IQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEE 358 IQAIYV HLDATTNLERKISE GIFPAVDPLASSSR+L PEI+GEE Sbjct: 301 IQAIYVPADDYTDPAPATTFAHLDATTNLERKISEMGIFPAVDPLASSSRLLNPEILGEE 360 Query: 359 HYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTG 418 HYNVAQGVK++LQRY ELQDIIAILGMDEL+EEDK+ V+RAR+++ FLSQPFHVAE FTG Sbjct: 361 HYNVAQGVKRILQRYKELQDIIAILGMDELTEEDKLTVSRARRIQLFLSQPFHVAEPFTG 420 Query: 419 FKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 KGKYVP+KE VRSFKEILEGKHDDLPE AF +VG IEEAVEKAK++ Sbjct: 421 IKGKYVPVKEIVRSFKEILEGKHDDLPEEAFRYVGVIEEAVEKAKTL 467 >Q71CG3.1 Q71CG3_9BACI ATP synthase subunit beta Length = 462 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/466 (76%), Positives = 393/466 (84%), Gaps = 5/466 (1%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 MNKGR++ +MGPVVDI+FE GQLP+I+NAI I G T LT+E + HLGDN+VRC+ Sbjct: 1 MNKGRIIQVMGPVVDIQFESGQLPDIYNAITI--ERPQGGT--LTVEAAVHLGDNVVRCV 56 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD-RNPIHRLAP 119 AM+STDGLVRGLEA+D G PISVPVG ATLGRVFNVLG PID EV A+ R+PIHR AP Sbjct: 57 AMASTDGLVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAP 116 Query: 120 TFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGIS 179 F+ELST EILETGIKVIDLLAPYA TV IQELINN+AQEHGG+S Sbjct: 117 EFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLS 176 Query: 180 VFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDVE 239 VFAGVGERTREGNDLYHEM DSGVI KT+MVFGQMNEPPGARLRVALTGLTMAEYFRD E Sbjct: 177 VFAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDRE 236 Query: 240 GRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI 299 G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGS+TSI Sbjct: 237 GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI 296 Query: 300 QAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEEH 359 QAIYV HLDATTNLERK++E GI+PAVDPLAS+SRIL+P +VGEEH Sbjct: 297 QAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTSRILSPAVVGEEH 356 Query: 360 YNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTGF 419 Y VA+GV+Q+LQRY +LQDIIAILGMDELS+EDK+IVARARK++RFLSQPFHVAEQFTG Sbjct: 357 YRVARGVQQVLQRYNDLQDIIAILGMDELSDEDKLIVARARKIQRFLSQPFHVAEQFTGM 416 Query: 420 KGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 GKYVP+KETVR FKEILEGKHD+LPE AF VGTI+EAVEKAK + Sbjct: 417 PGKYVPVKETVRGFKEILEGKHDNLPEEAFYMVGTIDEAVEKAKKL 462 >C2WER1.1 C2WER1_BACCE ATP synthase subunit beta Length = 469 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/467 (73%), Positives = 384/467 (82%), Gaps = 2/467 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 MNKGRV IMGPVVD++F+ G+LPEI+NA+ + S NG++ LT EV+ HLGD+ VR + Sbjct: 1 MNKGRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGASINLTFEVALHLGDDTVRTV 60 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHRLA 118 AMSSTDGLVRG E D G PISVPVGDATLGRVFNVLG+ ID EV AD R+PIHR A Sbjct: 61 AMSSTDGLVRGTEVEDTGKPISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQA 120 Query: 119 PTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGI 178 P F+ELST+ EILETGIKV+DLLAPY TV IQELINNIAQEHGGI Sbjct: 121 PAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGI 180 Query: 179 SVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDV 238 SVFAGVGERTREGNDLYHEM+DSGVIKKTAMVFGQMNEPPGAR RVALTGLTMAE+FRD Sbjct: 181 SVFAGVGERTREGNDLYHEMSDSGVIKKTAMVFGQMNEPPGARQRVALTGLTMAEHFRDE 240 Query: 239 EGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS 298 +G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST KGS+TS Sbjct: 241 QGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNKGSITS 300 Query: 299 IQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEE 358 IQA+YV HLDATTNLER++++ GI+PAVDPLAS+SR L+PEIVGEE Sbjct: 301 IQAVYVPADDYTDPAPATTFAHLDATTNLERRLTQMGIYPAVDPLASTSRALSPEIVGEE 360 Query: 359 HYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTG 418 HY VA+ V+Q LQRY ELQDIIAILGMDELSEEDK++V RAR+++ FLSQ FHVAEQFTG Sbjct: 361 HYEVARQVQQTLQRYKELQDIIAILGMDELSEEDKLVVHRARRIQFFLSQNFHVAEQFTG 420 Query: 419 FKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 KG YVP+KETVR FKEILEGK+DDLPE AF VG+IEE +E AK M Sbjct: 421 QKGSYVPVKETVRGFKEILEGKYDDLPEDAFRLVGSIEEVIENAKKM 467 >C0Z776.1 ATPB_BREBN ATP synthase subunit beta EC=3.6.3.14 Length = 469 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/468 (74%), Positives = 382/468 (81%), Gaps = 3/468 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSE--LTLEVSNHLGDNLVR 58 M GRVV +MGPVVD+EF+RG LP I+NAIKI + + LT+EV+ HLGDNLVR Sbjct: 1 MANGRVVQVMGPVVDVEFDRGHLPAIYNAIKIQHKAQSAGERDIDLTVEVATHLGDNLVR 60 Query: 59 CIAMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPID-NGAEVVADRNPIHRL 117 +AMSSTDGLVRG+EA+D G ISVPVG TLGRVFNVLG PID V R+PIHR Sbjct: 61 TVAMSSTDGLVRGMEAVDTGAAISVPVGAITLGRVFNVLGEPIDLQELGQVDRRDPIHRK 120 Query: 118 APTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGG 177 AP F + +T EILETGIKVIDLLAPY TVTIQELINNIAQEHGG Sbjct: 121 APEFVDQATTVEILETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVTIQELINNIAQEHGG 180 Query: 178 ISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRD 237 ISVFAGVGERTREGNDLYHEM D+GV+ KTAMVFGQMNEPPGARLRVALTGLTMAEYFRD Sbjct: 181 ISVFAGVGERTREGNDLYHEMKDAGVLPKTAMVFGQMNEPPGARLRVALTGLTMAEYFRD 240 Query: 238 VEGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVT 297 EGRD LLF+DNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVT Sbjct: 241 EEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVT 300 Query: 298 SIQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGE 357 SIQAIYV HLDATTNLER I+E GIFPAVDPLAS+SR LAP+IVG+ Sbjct: 301 SIQAIYVPADDYTDPAPATTFAHLDATTNLERSIAELGIFPAVDPLASTSRALAPDIVGQ 360 Query: 358 EHYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFT 417 EHY+VA+ V+++LQRY ELQDIIAILGMDELS++DK +V RAR+++RFLSQ FHVAEQFT Sbjct: 361 EHYDVARSVQKILQRYKELQDIIAILGMDELSDDDKQVVGRARRIQRFLSQSFHVAEQFT 420 Query: 418 GFKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 G G+YVP+KETVRSFKEILEGKHD LPE AFL+VGTIEEAVEKAK M Sbjct: 421 GNPGQYVPLKETVRSFKEILEGKHDHLPEGAFLYVGTIEEAVEKAKKM 468 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,388,843,220 Number of extensions: 93138272 Number of successful extensions: 296549 Number of sequences better than 1.0e-05: 13831 Number of HSP's gapped: 264772 Number of HSP's successfully gapped: 13874 Length of query: 465 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 326 Effective length of database: 1,751,175,118 Effective search space: 570883088468 Effective search space used: 570883088468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)