BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0003.p (140 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7J5.1 B3K7J5_9BACI ATP synthase F1, epsilon subunit 161 2e-38 B1DEG8.1 B1DEG8_9BACL ATP synthase F1, epsilon subunit 146 7e-34 B4BP65.1 B4BP65_9BACI ATP synthase F1, epsilon subunit 121 2e-26 A4ITI8.1 ATPE_GEOTN ATP synthase epsilon chain 121 2e-26 A8VSQ2.1 A8VSQ2_9BACI Sugar-phosphate isomerase, RpiB/LacA/LacB ... 119 6e-26 >B3K7J5.1 B3K7J5_9BACI ATP synthase F1, epsilon subunit Length = 134 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/132 (58%), Positives = 97/132 (73%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 ++T LLEIVTP+ LVYS+QVNS+TV+G +G+LGILPGHI VTPLQ+AP+F+K Sbjct: 1 MSTILLEIVTPDRLVYSEQVNSVTVRGVEGELGILPGHISFVTPLQIAPVFVKIGNERTP 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 AV GGFVEV KDK+ +LAESAE EID+ L ++ +QDE+DHRRAEL Sbjct: 61 FAVQGGFVEVRKDKIVILAESAERAGEIDLERAEAAKERAETRLHAKGRQDEVDHRRAEL 120 Query: 123 ALQRAVTRIKVS 134 ALQRA+ RIKV+ Sbjct: 121 ALQRAMNRIKVT 132 >B1DEG8.1 B1DEG8_9BACL ATP synthase F1, epsilon subunit Length = 132 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 2/132 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 ++TFL+EIVTPE VY++ N ++VKG G+LGILP HIPLVTPL++AP+ IK DG Sbjct: 1 MSTFLVEIVTPERKVYAETANMVSVKGIAGELGILPNHIPLVTPLRIAPISIKRDGKVDV 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV GGF+EV KDKV +LAESAEL +EIDV L +K+DE+D +RAEL Sbjct: 61 LAVGGGFIEVRKDKVVILAESAELASEIDVNRAQAAKQRAEERLA--AKRDEVDFKRAEL 118 Query: 123 ALQRAVTRIKVS 134 ALQRA RI V+ Sbjct: 119 ALQRASNRINVT 130 >B4BP65.1 B4BP65_9BACI ATP synthase F1, epsilon subunit Length = 133 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 2/132 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 + T + +VTP+ VY V ++VK G+LGILPGHIPLV PL+++ +K DG T Sbjct: 1 MKTIRVSVVTPDGPVYEGDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKDGKTSY 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV GGF+EV DKVT+LA++AE +IDV LQ S+QD+ID +RAEL Sbjct: 61 VAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAKERAERRLQ--SQQDDIDFKRAEL 118 Query: 123 ALQRAVTRIKVS 134 AL+RA+ R+ V+ Sbjct: 119 ALKRAMNRLNVA 130 >A4ITI8.1 ATPE_GEOTN ATP synthase epsilon chain Length = 133 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 2/132 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 + T + +VTP+ VY V ++VK G+LGILPGHIPLV PL+++ +K DG T Sbjct: 1 MKTIRVSVVTPDGPVYEGDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKDGKTSY 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV GGF+EV DKVT+LA++AE +IDV LQ S+QD+ID +RAEL Sbjct: 61 VAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAKERAERRLQ--SQQDDIDFKRAEL 118 Query: 123 ALQRAVTRIKVS 134 AL+RA+ R+ V+ Sbjct: 119 ALKRAMNRLNVA 130 >A8VSQ2.1 A8VSQ2_9BACI Sugar-phosphate isomerase, RpiB/LacA/LacB family Length = 134 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 1/132 (0%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 + T +VTP+ V+S V ++VK +G LGILPGH+PLV+PL + P+ +K +G Sbjct: 1 MKTIQANVVTPDGSVFSGDVEMVSVKTPEGGLGILPGHLPLVSPLAIGPVRLKQNGNIQP 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV+GGF+EV D+V +LAESAELP+EID+ L + +K++ +D +RAEL Sbjct: 61 VAVNGGFIEVRPDEVNILAESAELPSEIDLTRARAAKERAERRL-AEAKKENLDFKRAEL 119 Query: 123 ALQRAVTRIKVS 134 AL+RAV R++V+ Sbjct: 120 ALKRAVNRLEVA 131 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 691,121,240 Number of extensions: 23109101 Number of successful extensions: 56513 Number of sequences better than 1.0e-05: 1553 Number of HSP's gapped: 55370 Number of HSP's successfully gapped: 1553 Length of query: 140 Length of database: 3,060,696,203 Length adjustment: 104 Effective length of query: 36 Effective length of database: 2,080,910,643 Effective search space: 74912783148 Effective search space used: 74912783148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)