BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0002.p
         (65 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7J4.1 B3K7J4_9BACI Conserved hypothetical integral membrane p...    79   9e-14
B1DEF1.1 B1DEF1_9BACL Putative uncharacterized protein                 63   8e-09
C5D977.1 C5D977_9BACI Putative uncharacterized protein                 57   5e-07
Q5WB80.1 Q5WB80_BACSK Putative uncharacterized protein                 57   8e-07
C0Z762.1 C0Z762_BREBN Putative uncharacterized protein                 55   1e-06

>B3K7J4.1 B3K7J4_9BACI Conserved hypothetical integral membrane protein
          Length = 84

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDYLGWSGQ 60
          ++VSL C+A++WWALQ +KLDLV+R+PK PQG+      A+VLG FVA FL+DY+ WS  
Sbjct: 20 IVVSLVCIALAWWALQQVKLDLVVRHPKGPQGKLLHLLLAVVLGRFVAEFLIDYITWSQM 79

Query: 61 IRNMF 65
          IR MF
Sbjct: 80 IRYMF 84


>B1DEF1.1 B1DEF1_9BACL Putative uncharacterized protein
          Length = 87

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDYLGWSGQ 60
          ++V+LF +   W+ LQ +KLD+  ++P+SP+ R      A+V+GH  AGF+LDY  W+  
Sbjct: 22 IVVNLFSIVFVWYILQEIKLDVFFKFPRSPKARMFQVVMAVVIGHGFAGFILDYWNWTKL 81

Query: 61 IR 62
          +R
Sbjct: 82 LR 83


>C5D977.1 C5D977_9BACI Putative uncharacterized protein
          Length = 80

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDYLGWSGQ 60
          ++V L  +AI+WW LQ ++L+++I+  +  QGR       I++G  VA F LDYL WS Q
Sbjct: 13 IVVHLVFIAITWWTLQGVRLEMIIKPNRVFQGRLLYILLTIMIGSTVANFFLDYLSWSKQ 72

Query: 61 IRNMF 65
          +  +F
Sbjct: 73 LPFLF 77


>Q5WB80.1 Q5WB80_BACSK Putative uncharacterized protein
          Length = 77

 Score = 56.6 bits (135), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDY 54
          ++V+L C+ I+WWAL++ + DL ++ PKS Q        AI LG  VA FLLDY
Sbjct: 13 IVVNLLCLVIAWWALESFRFDLFVKNPKSKQAALLRVMCAIALGTLVARFLLDY 66


>C0Z762.1 C0Z762_BREBN Putative uncharacterized protein
          Length = 76

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDYLGWSGQ 60
          +I+S+  + ++WWALQ+ + D +++ P   Q +      +IV+G+ ++ F LDYLGWS  
Sbjct: 11 IILSIAFIGLAWWALQSFRFDKILKKPNGAQAKLLQIILSIVIGYELSRFFLDYLGWSLT 70

Query: 61 IRNMF 65
            N+F
Sbjct: 71 FGNLF 75


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.333    0.146    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 351,338,511
Number of extensions: 9236324
Number of successful extensions: 19949
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 19949
Number of HSP's successfully gapped: 10
Length of query: 65
Length of database: 3,060,696,203
Length adjustment: 37
Effective length of query: 28
Effective length of database: 2,712,118,648
Effective search space: 75939322144
Effective search space used: 75939322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 125 (52.8 bits)