BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0063.0002.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK88.1 B3KK88_9BACI SNO glutamine amidotransferase 271 2e-71 B2BCX3.1 B2BCX3_PAEPO Glutamine amidotransferase subunit 263 6e-69 B1DKC2.1 B1DKC2_9BACL SNO glutamine amidotransferase 248 1e-64 Q8L1A7.1 PDXT_BACCI Glutamine amidotransferase subunit pdxT EC=2... 246 7e-64 Q9KGN5.1 PDXT_BACHD Glutamine amidotransferase subunit pdxT EC=2... 221 3e-56 >B3KK88.1 B3KK88_9BACI SNO glutamine amidotransferase Length = 195 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 135/194 (69%), Positives = 154/194 (79%) Query: 1 MKIGVLALQGAVTEHIVSIEKTGAQGLPIKRAXXXXXXXXXXXXXXXSTTIGKLMRKYGF 60 MK+GVLALQGAV EHI SI GA+G+PIK+ STTIGKLMRKY F Sbjct: 1 MKVGVLALQGAVAEHIRSITLAGAEGVPIKKVEQLDDIDGLIIPGGESTTIGKLMRKYDF 60 Query: 61 IEAIRDFAGRGKPVFGTCAGMIVLAKRIDGGEPAHLELMDITVARNAFGRQRESFECDLD 120 ++AIR F+ +GKP+FGTCAG+IVLA+RI G E AHL+LMDITVARNAFGRQRESFE DL Sbjct: 61 MDAIRQFSAQGKPIFGTCAGLIVLAERIQGDEEAHLKLMDITVARNAFGRQRESFETDLP 120 Query: 121 VKGIDEPVRAVFIRAPLITEVGPDVDVLTVYKDEIVTARQGNLLVSSFHPELTDDYRLHQ 180 VKGIDE VRAVFIRAPLI EVGP V+VL+ YKDEIVTARQG+LL +S+HPELTDD+RLHQ Sbjct: 121 VKGIDETVRAVFIRAPLILEVGPGVEVLSTYKDEIVTARQGHLLAASYHPELTDDFRLHQ 180 Query: 181 YFADMVEHSAAANQ 194 YF +MV A A Q Sbjct: 181 YFVEMVRSRATAPQ 194 >B2BCX3.1 B2BCX3_PAEPO Glutamine amidotransferase subunit Length = 188 Score = 263 bits (672), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 130/186 (69%), Positives = 146/186 (78%) Query: 1 MKIGVLALQGAVTEHIVSIEKTGAQGLPIKRAXXXXXXXXXXXXXXXSTTIGKLMRKYGF 60 MKIGVL+LQGAV EHI S+E+ GA+ + +K+ STTIGKLMRKY F Sbjct: 1 MKIGVLSLQGAVAEHIRSVERAGAECIAVKKIEQLNELSGLIIPGGESTTIGKLMRKYDF 60 Query: 61 IEAIRDFAGRGKPVFGTCAGMIVLAKRIDGGEPAHLELMDITVARNAFGRQRESFECDLD 120 IEAIR F+ +GKPVFGTCAG+IVLAK I G E AHL LMDITV+RNAFGRQRESFE DL+ Sbjct: 61 IEAIRQFSNQGKPVFGTCAGLIVLAKTIQGQEEAHLGLMDITVSRNAFGRQRESFETDLN 120 Query: 121 VKGIDEPVRAVFIRAPLITEVGPDVDVLTVYKDEIVTARQGNLLVSSFHPELTDDYRLHQ 180 +KGI+EPVRAVFIRAPLI VG VDVL+ Y EIV ARQG+LL SSFHPELTDDYRLHQ Sbjct: 121 IKGIEEPVRAVFIRAPLIQSVGTGVDVLSEYNGEIVAARQGHLLASSFHPELTDDYRLHQ 180 Query: 181 YFADMV 186 YF DMV Sbjct: 181 YFVDMV 186 >B1DKC2.1 B1DKC2_9BACL SNO glutamine amidotransferase Length = 195 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/190 (65%), Positives = 151/190 (79%) Query: 1 MKIGVLALQGAVTEHIVSIEKTGAQGLPIKRAXXXXXXXXXXXXXXXSTTIGKLMRKYGF 60 MKIGVLALQGAV EHI S+E GA+ + +KR STTIGKL+RKY F Sbjct: 1 MKIGVLALQGAVAEHIRSLEAAGAEAVAVKRIEELAELDGIVIPGGESTTIGKLIRKYDF 60 Query: 61 IEAIRDFAGRGKPVFGTCAGMIVLAKRIDGGEPAHLELMDITVARNAFGRQRESFECDLD 120 +EA+++F+ +GKP+FGTCAG+I+LA++I+G + AHLELMD+ VARNAFGRQRESFE DL Sbjct: 61 LEALKEFSKQGKPLFGTCAGLIILARKIEGQDDAHLELMDMVVARNAFGRQRESFETDLP 120 Query: 121 VKGIDEPVRAVFIRAPLITEVGPDVDVLTVYKDEIVTARQGNLLVSSFHPELTDDYRLHQ 180 ++GIDEP+RAVFIRAPLI EVG V+VL+VY DEIV ARQG+LL SFHPELTDDYRLH Sbjct: 121 IQGIDEPIRAVFIRAPLIKEVGSSVEVLSVYNDEIVAARQGHLLACSFHPELTDDYRLHA 180 Query: 181 YFADMVEHSA 190 YF DMV+ +A Sbjct: 181 YFVDMVKEAA 190 >Q8L1A7.1 PDXT_BACCI Glutamine amidotransferase subunit pdxT EC=2.6.-.- Length = 190 Score = 246 bits (628), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 123/189 (65%), Positives = 142/189 (75%) Query: 1 MKIGVLALQGAVTEHIVSIEKTGAQGLPIKRAXXXXXXXXXXXXXXXSTTIGKLMRKYGF 60 MK+GVLALQGAV EHI IE G +G+ +KRA STTIGKLMR+YGF Sbjct: 1 MKVGVLALQGAVAEHIRLIEAVGGEGVVVKRAEQLAELDGLIIPGGESTTIGKLMRRYGF 60 Query: 61 IEAIRDFAGRGKPVFGTCAGMIVLAKRIDGGEPAHLELMDITVARNAFGRQRESFECDLD 120 IEAIRDF+ +GK VFGTCAG+IV+A +I G E AHL LMD+TV RNAFGRQRESFE DL Sbjct: 61 IEAIRDFSNQGKAVFGTCAGLIVIADKIAGQEEAHLGLMDMTVQRNAFGRQRESFETDLP 120 Query: 121 VKGIDEPVRAVFIRAPLITEVGPDVDVLTVYKDEIVTARQGNLLVSSFHPELTDDYRLHQ 180 VKGID PVRAVFIRAPLI +VG VDVL+ Y +IV ARQG+LL +SFHPELTDD +H Sbjct: 121 VKGIDRPVRAVFIRAPLIDQVGNGVDVLSEYNGQIVAARQGHLLAASFHPELTDDSSMHA 180 Query: 181 YFADMVEHS 189 YF DM+ + Sbjct: 181 YFLDMIREA 189 >Q9KGN5.1 PDXT_BACHD Glutamine amidotransferase subunit pdxT EC=2.6.-.- Length = 196 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/194 (57%), Positives = 138/194 (71%) Query: 1 MKIGVLALQGAVTEHIVSIEKTGAQGLPIKRAXXXXXXXXXXXXXXXSTTIGKLMRKYGF 60 +KIGVLALQGAV EH+ +E G + +K+ STT+ +L+ KYGF Sbjct: 2 VKIGVLALQGAVREHVRCLEAPGVEVSIVKKVEQLEDLDGLVFPGGESTTMRRLIDKYGF 61 Query: 61 IEAIRDFAGRGKPVFGTCAGMIVLAKRIDGGEPAHLELMDITVARNAFGRQRESFECDLD 120 E ++ FA +GKPVFGTCAG+I++A RIDG + HLELMD+TV RNAFGRQRESFE DL Sbjct: 62 FEPLKAFAAQGKPVFGTCAGLILMATRIDGEDHGHLELMDMTVQRNAFGRQRESFETDLI 121 Query: 121 VKGIDEPVRAVFIRAPLITEVGPDVDVLTVYKDEIVTARQGNLLVSSFHPELTDDYRLHQ 180 V+G+ + VRAVFIRAPLI EVG +VDVL+ + DEIV ARQG+LL SFHPELTDD R HQ Sbjct: 122 VEGVGDDVRAVFIRAPLIQEVGQNVDVLSKFGDEIVVARQGHLLGCSFHPELTDDRRFHQ 181 Query: 181 YFADMVEHSAAANQ 194 YF MV+ + Q Sbjct: 182 YFVQMVKEAKTIAQ 195 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,018,402,966 Number of extensions: 37533689 Number of successful extensions: 77296 Number of sequences better than 1.0e-05: 584 Number of HSP's gapped: 75917 Number of HSP's successfully gapped: 587 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)