BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0063.0001.p (438 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2BCX4.1 B2BCX4_PAEPO Seryl tRNA synthetase 714 0.0 B3KK89.1 B3KK89_9BACI Seryl-tRNA synthetase EC=6.1.1.11 691 0.0 B1DKC1.1 B1DKC1_9BACL Seryl-tRNA synthetase EC=6.1.1.11 632 e-179 C5D340.1 C5D340_9BACI Seryl-tRNA synthetase EC=6.1.1.11 599 e-169 B7GFM0.1 B7GFM0_ANOFW Seryl-tRNA synthetase 594 e-168 >B2BCX4.1 B2BCX4_PAEPO Seryl tRNA synthetase Length = 427 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/426 (80%), Positives = 376/426 (88%) Query: 10 VLDVKILRSDYARVEEALNKRGKSLELIAGFPQXXXXXXXXXXXXXXXKNRRNTVSGEVA 69 +LD+KILR++ RVE+AL RGKSL+LI GF KNRRN VSGEVA Sbjct: 1 MLDIKILRNELGRVEKALQNRGKSLDLINGFTDLDVSRRELLQESEGLKNRRNVVSGEVA 60 Query: 70 KKKKNGEPADDLIAEMRTVSDRIKELDDEVRELETRIEELTMNIPNIPHESVPVGKSEEE 129 K KKN E ADDLIAEMR VSDRIKELD++VRELE +I+EL M+IPNIP+++VPVG SEE+ Sbjct: 61 KLKKNKENADDLIAEMRQVSDRIKELDEQVRELEVQIDELVMSIPNIPNDTVPVGASEED 120 Query: 130 NVEIRRWSQPREFGFTPKSHWELAQQLDIIDFEAAAKVTGSRFAFYKGLGARLERALINF 189 NVEIRRWS+PREF FTPK+HWELAQ LDI+DFEAAAKVTGSRF FYKGLGARLERALINF Sbjct: 121 NVEIRRWSEPREFSFTPKAHWELAQDLDILDFEAAAKVTGSRFTFYKGLGARLERALINF 180 Query: 190 MMDLHSGEHNYEEMLPPYIVNKDSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNYY 249 MMDLHS EH YEEMLPPYIVN+DSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNY+ Sbjct: 181 MMDLHSSEHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNYH 240 Query: 250 REEILTAADLPKYHVAYSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKLTTPETSYEELE 309 REEI+ A LPKY+VAYSSCFRSEAGSAGRDTRGLIRQHQFNKVE++KL P+TSYEELE Sbjct: 241 REEIMNAEQLPKYYVAYSSCFRSEAGSAGRDTRGLIRQHQFNKVEMLKLVHPDTSYEELE 300 Query: 310 KMTADAERVLQLLELPYRVLGLCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDFQ 369 KMT +AERVLQLL LPYRVL LCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDFQ Sbjct: 301 KMTNNAERVLQLLGLPYRVLALCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDFQ 360 Query: 370 ARRANIRYRKEPKAKPEFVHTLNGSALAVGRTVAAILENYQQEDGTVLIPAVLQPYMRNV 429 ARRANIR+R + KAKPEFVHTLNGS LAVGRTVAAILENYQQEDG+++IP VL+ YMR + Sbjct: 361 ARRANIRFRPDSKAKPEFVHTLNGSGLAVGRTVAAILENYQQEDGSIVIPEVLRSYMRGI 420 Query: 430 KAISPK 435 + I+PK Sbjct: 421 EVIAPK 426 >B3KK89.1 B3KK89_9BACI Seryl-tRNA synthetase EC=6.1.1.11 Length = 427 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/426 (77%), Positives = 367/426 (86%) Query: 10 VLDVKILRSDYARVEEALNKRGKSLELIAGFPQXXXXXXXXXXXXXXXKNRRNTVSGEVA 69 +LDVKILRS+Y+RVEEAL RGKSL+LIA FP+ KNRRNTVS EVA Sbjct: 1 MLDVKILRSEYSRVEEALKNRGKSLDLIADFPKLDARRRELLQESESLKNRRNTVSAEVA 60 Query: 70 KKKKNGEPADDLIAEMRTVSDRIKELDDEVRELETRIEELTMNIPNIPHESVPVGKSEEE 129 K KKN E AD+LI EMR VSD+IK +D+EVRELE I ELT+ IPNIPHESVP+G SEEE Sbjct: 61 KLKKNRENADELILEMRQVSDQIKAMDEEVRELEASISELTLAIPNIPHESVPIGASEEE 120 Query: 130 NVEIRRWSQPREFGFTPKSHWELAQQLDIIDFEAAAKVTGSRFAFYKGLGARLERALINF 189 NVEIRRW++P+ F F PK+HWE+AQ L I+DFEA AKVTGSRF FYKGLGARLERALI+F Sbjct: 121 NVEIRRWAEPKAFDFEPKAHWEIAQNLSILDFEAGAKVTGSRFTFYKGLGARLERALISF 180 Query: 190 MMDLHSGEHNYEEMLPPYIVNKDSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNYY 249 MMDLHS +H YEEMLPPYIVN+DSLYGTGQLPKFEEDLFK+ DT+YYLIPTAEVPVTNY+ Sbjct: 181 MMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISDTDYYLIPTAEVPVTNYH 240 Query: 250 REEILTAADLPKYHVAYSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKLTTPETSYEELE 309 REEIL + DLPKY+VAYSSCFRSEAG+AGRDTRGLIRQHQFNKVE+VK+ PETS++ELE Sbjct: 241 REEILNSEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQFNKVEMVKIVHPETSFDELE 300 Query: 310 KMTADAERVLQLLELPYRVLGLCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDFQ 369 KMTADAERVLQLL LPYRV+ LCTGDMGF S KTYDLEVWLPESG+YREISSCSN DFQ Sbjct: 301 KMTADAERVLQLLNLPYRVMTLCTGDMGFGSMKTYDLEVWLPESGVYREISSCSNIGDFQ 360 Query: 370 ARRANIRYRKEPKAKPEFVHTLNGSALAVGRTVAAILENYQQEDGTVLIPAVLQPYMRNV 429 ARRANIR+R EPK+KPEFVHTLNGS LAVGRTVAAILENYQQ DG+V+IP VL+PYM NV Sbjct: 361 ARRANIRFRPEPKSKPEFVHTLNGSGLAVGRTVAAILENYQQADGSVVIPEVLRPYMGNV 420 Query: 430 KAISPK 435 I K Sbjct: 421 SIIELK 426 >B1DKC1.1 B1DKC1_9BACL Seryl-tRNA synthetase EC=6.1.1.11 Length = 427 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 300/427 (70%), Positives = 354/427 (82%) Query: 10 VLDVKILRSDYARVEEALNKRGKSLELIAGFPQXXXXXXXXXXXXXXXKNRRNTVSGEVA 69 +LDVK LR++Y +VE+AL R SL+LI+GFP+ K RRNTVS EVA Sbjct: 1 MLDVKWLRNEYEQVEKALKNRSASLDLISGFPELDVKRRALLVETDNLKTRRNTVSQEVA 60 Query: 70 KKKKNGEPADDLIAEMRTVSDRIKELDDEVRELETRIEELTMNIPNIPHESVPVGKSEEE 129 K KK+G A+ LI EMR V DRIKELD+E+R +E ++EEL + IPN+PHESVPVG SEE+ Sbjct: 61 KLKKSGGDAEALIIEMREVGDRIKELDEEIRTVEAQVEELMLAIPNLPHESVPVGSSEED 120 Query: 130 NVEIRRWSQPREFGFTPKSHWELAQQLDIIDFEAAAKVTGSRFAFYKGLGARLERALINF 189 NVEIRR + F F PK+HW+LAQ L I+DFE A KVTGSRF FY+GLGARLERALI+F Sbjct: 121 NVEIRRNGEQTTFDFEPKAHWDLAQDLGILDFERAGKVTGSRFTFYRGLGARLERALISF 180 Query: 190 MMDLHSGEHNYEEMLPPYIVNKDSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNYY 249 MMDLHS +H YEE+LPPY+VN+DSL GTGQLPKFEEDLFK+ D++Y+LIPTAEVPVTN + Sbjct: 181 MMDLHSDQHGYEEVLPPYLVNRDSLIGTGQLPKFEEDLFKISDSDYFLIPTAEVPVTNLH 240 Query: 250 REEILTAADLPKYHVAYSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKLTTPETSYEELE 309 REEIL+ +LPK+ VAYSSCFRSEAG+AGRDTRGLIRQHQFNKVEL+KL PE SY+ELE Sbjct: 241 REEILSIEELPKHFVAYSSCFRSEAGAAGRDTRGLIRQHQFNKVELIKLAKPEESYDELE 300 Query: 310 KMTADAERVLQLLELPYRVLGLCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDFQ 369 KMTA+AE+VLQLL LPYRVL LCTGDMGFT+AKTYDLEVWLP +G YREISSCSN EDFQ Sbjct: 301 KMTANAEKVLQLLGLPYRVLALCTGDMGFTAAKTYDLEVWLPSAGTYREISSCSNVEDFQ 360 Query: 370 ARRANIRYRKEPKAKPEFVHTLNGSALAVGRTVAAILENYQQEDGTVLIPAVLQPYMRNV 429 ARRA IR+R++ K+KPEFVHTLNGS LAVGRT AAILENYQQ DGT+++P VL+PYM + Sbjct: 361 ARRAGIRFRRDAKSKPEFVHTLNGSGLAVGRTFAAILENYQQADGTIVVPEVLRPYMGGL 420 Query: 430 KAISPKA 436 + ISP+ Sbjct: 421 EKISPRV 427 >C5D340.1 C5D340_9BACI Seryl-tRNA synthetase EC=6.1.1.11 Length = 424 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 284/423 (67%), Positives = 342/423 (80%) Query: 10 VLDVKILRSDYARVEEALNKRGKSLELIAGFPQXXXXXXXXXXXXXXXKNRRNTVSGEVA 69 +LDVK LR+ + V+E L KRG+ L I F + KN+RN VS ++A Sbjct: 1 MLDVKYLRNHFEEVKEKLLKRGEDLTNIDRFEELDKKRRELIAKAEELKNKRNEVSQQIA 60 Query: 70 KKKKNGEPADDLIAEMRTVSDRIKELDDEVRELETRIEELTMNIPNIPHESVPVGKSEEE 129 K+ + AD LIAEMR V DRIK +DDE+R++E + L ++IPNIPHESVPVGKSEE+ Sbjct: 61 VLKREKKDADHLIAEMRDVGDRIKTMDDEIRQVEEELNALLLSIPNIPHESVPVGKSEED 120 Query: 130 NVEIRRWSQPREFGFTPKSHWELAQQLDIIDFEAAAKVTGSRFAFYKGLGARLERALINF 189 NVE+R+W +PR F F PK HW++A+QL I+DFE AAKVTGSRF FYKGLGARLERALINF Sbjct: 121 NVEVRKWGEPRSFSFEPKPHWDIAEQLGILDFERAAKVTGSRFVFYKGLGARLERALINF 180 Query: 190 MMDLHSGEHNYEEMLPPYIVNKDSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNYY 249 M+D+H E Y+E+LPPY+VN+ S+ GTGQLPKFEED F++ +Y+LIPTAEVPVTN + Sbjct: 181 MLDVHIEEFGYQEILPPYLVNRASMTGTGQLPKFEEDAFRIETDDYFLIPTAEVPVTNLH 240 Query: 250 REEILTAADLPKYHVAYSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKLTTPETSYEELE 309 R+EIL+A DLP Y+VAYS+CFR+EAGSAGRDTRGLIRQHQFNKVELVK PE SY+ELE Sbjct: 241 RDEILSAEDLPIYYVAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYDELE 300 Query: 310 KMTADAERVLQLLELPYRVLGLCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDFQ 369 K+T AER+LQLL LPYRV+ LCTGD+GF+SAKTYD+EVWLP G YREISSCSN E FQ Sbjct: 301 KLTNQAERILQLLGLPYRVVCLCTGDLGFSSAKTYDIEVWLPSYGTYREISSCSNFEAFQ 360 Query: 370 ARRANIRYRKEPKAKPEFVHTLNGSALAVGRTVAAILENYQQEDGTVLIPAVLQPYMRNV 429 ARRANIR+R+EPKAKPE+VHTLNGS LA+GRTVAAILENYQQEDGTV+IP VL+PYM N+ Sbjct: 361 ARRANIRFRREPKAKPEYVHTLNGSGLAIGRTVAAILENYQQEDGTVVIPEVLRPYMGNL 420 Query: 430 KAI 432 + I Sbjct: 421 EVI 423 >B7GFM0.1 B7GFM0_ANOFW Seryl-tRNA synthetase Length = 426 Score = 594 bits (1532), Expect = e-168, Method: Compositional matrix adjust. Identities = 281/425 (66%), Positives = 337/425 (79%) Query: 9 FVLDVKILRSDYARVEEALNKRGKSLELIAGFPQXXXXXXXXXXXXXXXKNRRNTVSGEV 68 +LD+K LR+ + V++ L RG+ L F Q KN+RN VS ++ Sbjct: 2 LMLDLKFLRTHFEEVKQKLQHRGEDLADFERFEQLDRRRRELIAQAEELKNKRNDVSQQI 61 Query: 69 AKKKKNGEPADDLIAEMRTVSDRIKELDDEVRELETRIEELTMNIPNIPHESVPVGKSEE 128 A K+ + AD LIAEMR V DRIK LDDE+RE+E +++ L ++IPNIPHESVP+G+SE+ Sbjct: 62 ALLKREKKDADHLIAEMRQVGDRIKVLDDELREVEQQLDTLLLSIPNIPHESVPIGESED 121 Query: 129 ENVEIRRWSQPREFGFTPKSHWELAQQLDIIDFEAAAKVTGSRFAFYKGLGARLERALIN 188 +NVEIR+W +PR F F PK HWE+A QL I+DFE AAKVTGSRF FYKGLGARLERALIN Sbjct: 122 DNVEIRKWGEPRSFSFEPKPHWEIADQLGILDFERAAKVTGSRFVFYKGLGARLERALIN 181 Query: 189 FMMDLHSGEHNYEEMLPPYIVNKDSLYGTGQLPKFEEDLFKLRDTEYYLIPTAEVPVTNY 248 FM+D+H +H YEE+LPPYIVN+ S+ GTGQLPKFEED F++ +Y+LIPTAEVPVTN Sbjct: 182 FMLDVHVEQHGYEEVLPPYIVNRASMTGTGQLPKFEEDAFRIESEDYFLIPTAEVPVTNL 241 Query: 249 YREEILTAADLPKYHVAYSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKLTTPETSYEEL 308 +R+EIL+A DLP + AYS+CFRSEAGSAGRDTRGLIRQHQFNKVELVK PE SYEEL Sbjct: 242 HRDEILSADDLPIKYAAYSACFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEEL 301 Query: 309 EKMTADAERVLQLLELPYRVLGLCTGDMGFTSAKTYDLEVWLPESGMYREISSCSNTEDF 368 EK+T DAER+LQLL LPYRV+ +CT D+GFT+AK YD+EVWLP G YREISSCSN E F Sbjct: 302 EKLTNDAERILQLLGLPYRVMSMCTADLGFTAAKKYDIEVWLPSYGTYREISSCSNFEAF 361 Query: 369 QARRANIRYRKEPKAKPEFVHTLNGSALAVGRTVAAILENYQQEDGTVLIPAVLQPYMRN 428 QARRANIR+R++PKAKPE VHTLNGS LA+GRTVAAILENYQQEDGTV+IP VL+PYM Sbjct: 362 QARRANIRFRRDPKAKPEHVHTLNGSGLAIGRTVAAILENYQQEDGTVVIPEVLRPYMGG 421 Query: 429 VKAIS 433 + IS Sbjct: 422 KEVIS 426 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,572,033,520 Number of extensions: 107945398 Number of successful extensions: 325243 Number of sequences better than 1.0e-05: 1944 Number of HSP's gapped: 320499 Number of HSP's successfully gapped: 1963 Length of query: 438 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 299 Effective length of database: 1,751,175,118 Effective search space: 523601360282 Effective search space used: 523601360282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)