BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0010.p
         (197 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2B0T7.1 Q2B0T7_9BACI YoeB                                             84   6e-15
Q65L52.1 Q65L52_BACLD YoeB                                             59   2e-07
Q2BA67.1 Q2BA67_9BACI Putative uncharacterized protein                 57   9e-07
B4ADI1.1 B4ADI1_BACPU YoeB                                             57   1e-06
A8FDP5.1 A8FDP5_BACP2 Putative uncharacterized protein yoeB            56   2e-06

>Q2B0T7.1 Q2B0T7_9BACI YoeB
          Length = 180

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 83  ETFQYKGTEYRYLSSDIGSKQQLMNYVKRAYTHNAA-AFYVQTQFLEQNGRMAQVNTDIG 141
           +TFQYKGTEYRYL S+I +K +L  Y+  ++T NA    Y + +F+E  G+MAQ N D G
Sbjct: 65  KTFQYKGTEYRYLCSEINTKAKLTKYLNESFTLNAIDKGYKKYRFIEYKGKMAQPNADGG 124

Query: 142 NSMQYDKATARMVSKTATAAVFELSVP-DQGMNQSVVVKLKKVSGYWRID 190
           + +Q++KA A+++        FE +VP  +  ++   V   KV G W+I+
Sbjct: 125 SLLQWNKAKAKLIYSRKDIRQFEFTVPYGEKQHEKKKVTFVKVRGKWQIN 174


>Q65L52.1 Q65L52_BACLD YoeB
          Length = 182

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 50  TINNLTVKSVIPLLVHAKKLYTYTSRG------GVTFQPETFQYKGTEYRYLSSDIGSKQ 103
           T  NLT K V+ L + A++ +  T  G        T   +TF+Y+G  Y Y+ S+  +K 
Sbjct: 27  TSGNLTNKQVMQLTLQAREHFWNTMSGHNPKAKNSTCPSKTFEYRGLPYTYMCSEFSTKA 86

Query: 104 QLMNYVKRAYTHNAAAFYVQT-QFLEQNGRMAQVNTDIGNSMQYDKATARMVSKTATAAV 162
           +L +Y+   +T +A    ++    +   G+MA    D  N + +DKA  +++S+      
Sbjct: 87  KLTDYLTPVFTKDAIKKGLEKYNIISYKGKMAVPVGDGDNLLGWDKAKIKLISQKNNTRT 146

Query: 163 FELSVPDQGMNQSVVVKLK----KVSGYWRID 190
           +E SVP   ++ SV  K K    K +  W+I+
Sbjct: 147 YEFSVP--ALDGSVTAKRKITFVKENNKWKIN 176


>Q2BA67.1 Q2BA67_9BACI Putative uncharacterized protein
          Length = 566

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 51  INNLTVKSVIPLLVHAKKLYTYTSRGGVTFQPETFQYKGTEYRYLSSDIGSKQQLMNYVK 110
           + NL  + +   +  A ++  +   GG   + E+      +YR++  D+ S+ +L+ Y  
Sbjct: 418 LENLEEEMLAAAINEAAQMRWHVQSGGNIEEMESITINELDYRFMGRDLDSESKLIQYFS 477

Query: 111 RAYTHNA-AAFYVQTQFLEQNGRMAQVNTDIGNSMQYDKATARMVSKTATAAVFELSVP- 168
            ++T+ A +A+ + +     NGR+ Q N D G+ M Y  A    +        F+L  P 
Sbjct: 478 SSFTNEAISAYIIHSGIKVHNGRLVQPNADGGSIMGYQHAEILQMKDAGDVKEFDLKAPL 537

Query: 169 -DQGMNQSVVVKLKKVSGYWRIDMSP 193
            D  + ++  ++ +K    W+I   P
Sbjct: 538 GDTLLYETFHIEFEKTKAGWKISSMP 563


>B4ADI1.1 B4ADI1_BACPU YoeB
          Length = 180

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 48  PATINNLTVKSVIPLLVHAKKLYT-----YTSRGGVTFQPETFQYKGTEYRYLSSDIGSK 102
           PAT+ N   K  + + + A++ +      Y       ++ ++F YK   Y YLS    +K
Sbjct: 28  PATLTN---KEALHIALDAREHFWSAMSGYKINEHSDYKLKSFSYKDMTYNYLSKTFDTK 84

Query: 103 QQLMNYVKRAYTHNAAAFYVQT-QFLEQNGRMAQVNTDIGNSMQYDKATARMVSKTATAA 161
           ++L +Y+ + +T  A    ++  QF+   G+MA    D  N + +DKAT ++VSK  T  
Sbjct: 85  KKLNSYLSQVFTKEAINQGLKDYQFIVHKGKMAVPVGDGDNMLNWDKATPKLVSKKQTVR 144

Query: 162 VFELSVPD-QGMNQSVVVKLKKVSGYWRI 189
            +E +VP   G      V  +K    W++
Sbjct: 145 TYEFTVPTLDGRKVQRTVTFEKGQKDWKV 173


>A8FDP5.1 A8FDP5_BACP2 Putative uncharacterized protein yoeB
          Length = 180

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 48  PATINNLTVKSVIPLLVHAKKLYT-----YTSRGGVTFQPETFQYKGTEYRYLSSDIGSK 102
           PAT+ N   K  + + + A++ +      Y  +    ++ ++F YK   Y YLS    +K
Sbjct: 28  PATLTN---KEALHIALDAREHFWSAMSGYKIKEHSDYKLKSFSYKDMTYNYLSKTFDTK 84

Query: 103 QQLMNYVKRAYTHNAAAFYVQT-QFLEQNGRMAQVNTDIGNSMQYDKATARMVSKTATAA 161
           ++L +Y+ + +T  A    ++  QF+   G+MA    D  N + +DKAT ++VS   T  
Sbjct: 85  KKLNSYLSQVFTKEAINQGLKDYQFIVHKGKMAVPVGDGDNMLNWDKATPKLVSNKQTVR 144

Query: 162 VFELSVPD-QGMNQSVVVKLKKVSGYWRI 189
            +E +VP   G      V  +K    W++
Sbjct: 145 TYEFTVPTLDGRKVKRTVTFEKGQKDWKV 173


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,046,657,875
Number of extensions: 37858434
Number of successful extensions: 111448
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 111444
Number of HSP's successfully gapped: 7
Length of query: 197
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 68
Effective length of database: 1,845,385,268
Effective search space: 125486198224
Effective search space used: 125486198224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)