BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0006.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7D1.1 B3K7D1_9BACI Cell division ATP-binding protein FtsE 437 e-121 B1DE81.1 B1DE81_9BACL Cell division ATP-binding protein FtsE 404 e-111 C0Z6R3.1 C0Z6R3_BREBN Cell division ATP-binding protein FtsE 343 7e-93 B7DSY8.1 B7DSY8_9BACL Cell division ATP-binding protein FtsE 341 2e-92 C1PV03.1 C1PV03_ALIAC Cell division ATP-binding protein FtsE 341 3e-92 >B3K7D1.1 B3K7D1_9BACI Cell division ATP-binding protein FtsE Length = 245 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/232 (91%), Positives = 224/232 (96%) Query: 5 GSDEVIEMQDVWKTYPNGTHALQGVSVKIDRNEFVYVVGPSGAGKSTFMKLIYREEMPTK 64 GSDEVIEMQDVWKTYP+G HALQGVSV I+RNEFVYVVGPSGAGKSTFMKLIYREE+PTK Sbjct: 14 GSDEVIEMQDVWKTYPSGAHALQGVSVTINRNEFVYVVGPSGAGKSTFMKLIYREEVPTK 73 Query: 65 GQISVGGFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLTAYENVAFAMEVIEAPKKVIKK 124 GQISV GFNIGKLK RKIPYVRRNIGVIFQD+RLLPKLTAYENVAFAMEVIEAP+++IK+ Sbjct: 74 GQISVNGFNIGKLKQRKIPYVRRNIGVIFQDYRLLPKLTAYENVAFAMEVIEAPQRLIKR 133 Query: 125 RVPEVLELVGLRSKANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGI 184 RV EVL+LVGL++KANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGI Sbjct: 134 RVMEVLDLVGLKAKANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGI 193 Query: 185 MQLLDEINFRGTTIVMATHNRDIVNKMRKRVLAIENGNIVRDQVRGEYGYEF 236 MQLLDEINFRGTTIVMATHNRDIVN MRKRVLAIE+G IVRDQ RGEYGYEF Sbjct: 194 MQLLDEINFRGTTIVMATHNRDIVNTMRKRVLAIEHGQIVRDQQRGEYGYEF 245 >B1DE81.1 B1DE81_9BACL Cell division ATP-binding protein FtsE Length = 229 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/227 (84%), Positives = 213/227 (93%) Query: 9 VIEMQDVWKTYPNGTHALQGVSVKIDRNEFVYVVGPSGAGKSTFMKLIYREEMPTKGQIS 68 +IEMQD+WKTY +GTHAL+GVSV+IDRNEFVY+VGPSGAGKSTFMKLIYREE+PTKGQIS Sbjct: 2 LIEMQDIWKTYTDGTHALRGVSVRIDRNEFVYLVGPSGAGKSTFMKLIYREEVPTKGQIS 61 Query: 69 VGGFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLTAYENVAFAMEVIEAPKKVIKKRVPE 128 V GFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLT YENVAFAMEVIEAP+++IKKR E Sbjct: 62 VNGFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLTVYENVAFAMEVIEAPRRLIKKRTME 121 Query: 129 VLELVGLRSKANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGIMQLL 188 VL+LVGL+ K + P+QLSGGEQQR+AIARAIVNNP+VI+ADEPTGNLDPETSWGIM LL Sbjct: 122 VLDLVGLKHKHSSLPAQLSGGEQQRVAIARAIVNNPTVIVADEPTGNLDPETSWGIMNLL 181 Query: 189 DEINFRGTTIVMATHNRDIVNKMRKRVLAIENGNIVRDQVRGEYGYE 235 +EINFRG TIVMATHN++IVN MRKRV+AIENGNI RD+ RGEYGYE Sbjct: 182 EEINFRGATIVMATHNKEIVNTMRKRVIAIENGNIARDEARGEYGYE 228 >C0Z6R3.1 C0Z6R3_BREBN Cell division ATP-binding protein FtsE Length = 228 Score = 343 bits (880), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 163/227 (71%), Positives = 198/227 (87%) Query: 9 VIEMQDVWKTYPNGTHALQGVSVKIDRNEFVYVVGPSGAGKSTFMKLIYREEMPTKGQIS 68 +IEM DVWKTYPNGT+AL+G++++I++ EFVYVVGPSGAGKSTF+KL+YREE PTKGQI Sbjct: 1 MIEMFDVWKTYPNGTNALKGINIRIEKGEFVYVVGPSGAGKSTFIKLMYREEKPTKGQIF 60 Query: 69 VGGFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLTAYENVAFAMEVIEAPKKVIKKRVPE 128 +GGFN+ ++K R+IP VRR+IGV+FQDF+LLP LT +ENVAFAMEVIE+ K IK RV + Sbjct: 61 LGGFNVSRIKERQIPLVRRSIGVVFQDFKLLPTLTVFENVAFAMEVIESNPKQIKPRVMD 120 Query: 129 VLELVGLRSKANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGIMQLL 188 VL LV L+ KA PS+LSGGEQQR+A+ARA+VN+P +IIADEPTGNLDPETSW IM+L Sbjct: 121 VLGLVKLKHKAKMLPSELSGGEQQRVALARALVNSPGIIIADEPTGNLDPETSWEIMKLF 180 Query: 189 DEINFRGTTIVMATHNRDIVNKMRKRVLAIENGNIVRDQVRGEYGYE 235 +EIN RGTT+VMATHNR+IVN MRKRV+AIE G I RD+ RGEYGYE Sbjct: 181 EEINQRGTTVVMATHNREIVNTMRKRVVAIEAGQIARDEQRGEYGYE 227 >B7DSY8.1 B7DSY8_9BACL Cell division ATP-binding protein FtsE Length = 228 Score = 341 bits (875), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 164/227 (72%), Positives = 191/227 (84%) Query: 9 VIEMQDVWKTYPNGTHALQGVSVKIDRNEFVYVVGPSGAGKSTFMKLIYREEMPTKGQIS 68 +IEMQDVWK YPNGT AL G+SV+I + EFVY+VGPSGAGKSTF+KL+YREE PT+G I Sbjct: 1 MIEMQDVWKEYPNGTQALNGISVRIQKGEFVYIVGPSGAGKSTFIKLMYREERPTRGHIF 60 Query: 69 VGGFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLTAYENVAFAMEVIEAPKKVIKKRVPE 128 + GFNI KLK RKIP +RR IGV+FQDF+LLPKLTA ENVAFA+EVI AP K I+KRV E Sbjct: 61 INGFNIDKLKDRKIPLLRRTIGVVFQDFKLLPKLTAAENVAFALEVIGAPPKYIRKRVRE 120 Query: 129 VLELVGLRSKANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGIMQLL 188 VLE VGL K N P QLSGGEQQR+A+AR++ NNP+V+IADEPTGNLDPETSW +M+L Sbjct: 121 VLEQVGLEDKMNMYPHQLSGGEQQRVAVARSLANNPAVLIADEPTGNLDPETSWDVMRLF 180 Query: 189 DEINFRGTTIVMATHNRDIVNKMRKRVLAIENGNIVRDQVRGEYGYE 235 IN GTTIVMATHNR+IVN MRKRV+AIENG IVRD+ +G YGY+ Sbjct: 181 QRINDLGTTIVMATHNREIVNTMRKRVIAIENGVIVRDEEKGYYGYD 227 >C1PV03.1 C1PV03_ALIAC Cell division ATP-binding protein FtsE Length = 228 Score = 341 bits (874), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 164/227 (72%), Positives = 191/227 (84%) Query: 9 VIEMQDVWKTYPNGTHALQGVSVKIDRNEFVYVVGPSGAGKSTFMKLIYREEMPTKGQIS 68 +IEMQDVWK YPNGT AL G+SV+I + EFVY+VGPSGAGKSTF+KL+YREE PT+G I Sbjct: 1 MIEMQDVWKEYPNGTQALNGISVRIQKGEFVYIVGPSGAGKSTFIKLMYREERPTRGHIF 60 Query: 69 VGGFNIGKLKPRKIPYVRRNIGVIFQDFRLLPKLTAYENVAFAMEVIEAPKKVIKKRVPE 128 + GFNI KLK RKIP +RR IGV+FQDF+LLPKLTA ENVAFA+EVI AP K I+KRV E Sbjct: 61 INGFNIEKLKDRKIPLLRRTIGVVFQDFKLLPKLTAAENVAFALEVIGAPPKYIRKRVRE 120 Query: 129 VLELVGLRSKANREPSQLSGGEQQRIAIARAIVNNPSVIIADEPTGNLDPETSWGIMQLL 188 VLE VGL K N P QLSGGEQQR+A+AR++ NNP+V+IADEPTGNLDPETSW +M+L Sbjct: 121 VLEQVGLEDKMNMYPHQLSGGEQQRVAVARSLANNPAVLIADEPTGNLDPETSWDVMRLF 180 Query: 189 DEINFRGTTIVMATHNRDIVNKMRKRVLAIENGNIVRDQVRGEYGYE 235 IN GTTIVMATHNR+IVN MRKRV+AIENG IVRD+ +G YGY+ Sbjct: 181 QRINDLGTTIVMATHNREIVNTMRKRVIAIENGVIVRDEEKGYYGYD 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,432,949,765 Number of extensions: 59309846 Number of successful extensions: 475586 Number of sequences better than 1.0e-05: 97926 Number of HSP's gapped: 351585 Number of HSP's successfully gapped: 107005 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)