BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0005.p (306 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7D0.1 B3K7D0_9BACI Putative uncharacterized protein 352 3e-95 B1DE80.1 B1DE80_9BACL Putative uncharacterized protein 283 1e-74 C0Z6R2.1 C0Z6R2_BREBN Cell division protein FtsX 209 4e-52 Q9K6X3.1 Q9K6X3_BACHD Cell-division protein 205 5e-51 A7Z994.1 A7Z994_BACA2 FtsX 202 3e-50 >B3K7D0.1 B3K7D0_9BACI Putative uncharacterized protein Length = 302 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 180/305 (59%), Positives = 219/305 (71%), Gaps = 4/305 (1%) Query: 3 MSFKTFLRHVREGFKNVFRNGWMSVASITXXXXXXXXXXXXXXXXXXXXAIADKADSQVQ 62 M+F+TFLRH+REG K+VFRNGWMSVASIT A+ADKADS VQ Sbjct: 1 MNFRTFLRHLREGAKSVFRNGWMSVASITSIVVSLFILGVFMLLVMNVNALADKADSNVQ 60 Query: 63 INVHLALNTDQKMRETLENEIGSMPEVSKVEFVSKEQGLKEFREDMGPDAAELLEGFDE- 121 IN +L LN D+K+RET++ EI +MPEV+ ++FVSKE+G+KE E +G +E +EGF E Sbjct: 61 INTYLNLNVDEKLRETIKGEIEAMPEVNAIKFVSKEEGMKELEESLG---SEWVEGFSEA 117 Query: 122 DNNPLPDKLLVEVIQPTTVPFVAEKIEALNKTHEEKPIYKVNYGKGSVETLFKVTKAVRN 181 D NPLPD V VI+PTTV FVA+KI ALN+ + E+PI +V YG+G+VETLFK+TK VRN Sbjct: 118 DQNPLPDAFEVSVIEPTTVGFVADKITALNEKYAEEPILRVKYGEGTVETLFKITKTVRN 177 Query: 182 IGFIFVAGLALMSMFLISNTIRVTILARRKEIGIMKLVGATNYFIRWPFFIEGALIGLIG 241 IGFIFVAGL LMSMFLISNTIRVTILARR+EIGIMKLVGATN FIRWPFF+EGA+IGL+G Sbjct: 178 IGFIFVAGLGLMSMFLISNTIRVTILARRREIGIMKLVGATNNFIRWPFFVEGAMIGLLG 237 Query: 242 SLVTSGALYAGYSSLVSSVQGDPMLGLQLIPFQDXXXXXXXXXXXXXXXXXXXXSTVSIR 301 S++T L+ GY+ L ++ Q D L LIP D ST+SIR Sbjct: 238 SIITVTLLFIGYNRLYAASQTDLTLAQSLIPLGDLWLLLGTIIVALGIVIGIWGSTMSIR 297 Query: 302 KFLKV 306 KFLKV Sbjct: 298 KFLKV 302 >B1DE80.1 B1DE80_9BACL Putative uncharacterized protein Length = 305 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/305 (47%), Positives = 193/305 (63%), Gaps = 1/305 (0%) Query: 3 MSFKTFLRHVREGFKNVFRNGWMSVASITXXXXXXXXXXXXXXXXXXXXAIADKADSQVQ 62 M T LRH REGFKN+ RNGWMS ASI+ + +SQVQ Sbjct: 1 MRISTLLRHFREGFKNIIRNGWMSFASISSIFFSLFLLGVFVLLALNINNMTSNIESQVQ 60 Query: 63 INVHLALNTDQKMRETLENEIGSMPEVSKVEFVSKEQGLKEFREDMGPDAAELLEGFDED 122 I V+L + DQ+ LEN+I + +VSKVEFVSKE+GL+ R+++G D LL+G+D+D Sbjct: 61 IRVYLQTDIDQQKANELENKIRKLTDVSKVEFVSKEEGLELLRKNLGKDGDALLDGYDKD 120 Query: 123 NNPLPDKLLVEVIQPTTVPFVAEKIEALNKTHEEKPIYKVNYGKGSVETLFKVTKAVRNI 182 +NPLPD VEV P + A +I ALN + E KPI V YG+G+VE +FK+T A+RNI Sbjct: 121 SNPLPDSFTVEVFDPQNIAVTANEITALNNSDETKPITSVKYGQGTVEKMFKITNAIRNI 180 Query: 183 GFIFVAGLALMSMFLISNTIRVTILARRKEIGIMKLVGATNYFIRWPFFIEGALIGLIGS 242 G I V GL + +MFLIS TI++TILARR+EIGIMKLVGATN FIRWPFF+EGALIG++ S Sbjct: 181 GLIIVIGLGVTAMFLISTTIKMTILARRREIGIMKLVGATNSFIRWPFFVEGALIGIVAS 240 Query: 243 LVTSGALYAGYSSLVSSVQGD-PMLGLQLIPFQDXXXXXXXXXXXXXXXXXXXXSTVSIR 301 +T+ + YS LVS + + +L ++LIP ++ S +S+R Sbjct: 241 GITTLVVLLAYSKLVSMNEMELGLLMIKLIPIEECGWKITVLLMGLGTLLGVWGSVLSVR 300 Query: 302 KFLKV 306 K+LKV Sbjct: 301 KYLKV 305 >C0Z6R2.1 C0Z6R2_BREBN Cell division protein FtsX Length = 298 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 109/259 (42%), Positives = 159/259 (61%), Gaps = 8/259 (3%) Query: 3 MSFKTFLRHVREGFKNVFRNGWMSVASITXXXXXXXXXXXXXXXXXXXXAIADKADSQVQ 62 M +T RHVREG KN+ RNGWMS ASI+ A + QV+ Sbjct: 1 MKIRTLGRHVREGVKNLGRNGWMSFASISAVTITLFILGVFLILAMNVNYFAQTVEKQVE 60 Query: 63 INVHLALNTDQKMRETLENEIGSMPEVSKVEFVSKEQGLKEFREDMGPDAAELLEGFDED 122 I V + L ++ +EN I +P+V V F+ K++GLK+F+E +G + A L EG +E Sbjct: 61 IRVFMDLLATKENITQVENNIKKLPQVESVSFIPKDEGLKKFKESLG-EKAYLFEGLEE- 118 Query: 123 NNPLPDKLLVEVIQPTTVPFVAEKIEALNKTHEEKPIYKVNYGKGSVETLFKVTKAVRNI 182 +NPLPD V+ QP VA +I+ + + + + YG+G+V+ LF +T AVRN+ Sbjct: 119 SNPLPDAFTVKTKQPQDTAAVAAQIKNI------QYVKSLTYGEGTVDKLFSLTGAVRNV 172 Query: 183 GFIFVAGLALMSMFLISNTIRVTILARRKEIGIMKLVGATNYFIRWPFFIEGALIGLIGS 242 G F+ GL +MFLI+NTI++TI+ARR+EI IMKLVGATN+FIRWPFF+EG ++G+ G+ Sbjct: 173 GIAFIIGLGFTAMFLIANTIKLTIVARRREIEIMKLVGATNWFIRWPFFVEGLMMGVAGA 232 Query: 243 LVTSGALYAGYSSLVSSVQ 261 L+ + L GY L+ ++ Sbjct: 233 LIPTIMLMVGYYYLLDAIH 251 >Q9K6X3.1 Q9K6X3_BACHD Cell-division protein Length = 298 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 8/305 (2%) Query: 3 MSFKTFLRHVREGFKNVFRNGWMSVASITXXXXXXXXXXXXXXXXXXXXAIADKADSQVQ 62 M F+T RHVREG KN+ RNGWM+ ASI+ +A + V+ Sbjct: 1 MKFRTLSRHVREGTKNLGRNGWMTFASISAVAVMLFVVGAFILMIMNMNQVATTVEDDVE 60 Query: 63 INVHLALNTDQKMRETLENEIGSMPEVSKVEFVSKEQGLKEFREDMGPDAAELLEGFDED 122 INV++ L D+ +E LE EI ++P + V +VS+++GL + + + A + E E+ Sbjct: 61 INVYIELTADKTQQEALEAEIQTIPNIESVTYVSRDEGLDQLIGSLDEETAPVFESLREE 120 Query: 123 NNPLPDKLLVEVIQPTTVPFVAEKIEALNKTHEEKPIYKVNYGKGSVETLFKVTKAVRNI 182 N PL DK +V P +A++IEA+N V +G+ V LF +T VR Sbjct: 121 N-PLNDKFVVRATNPQLTEQIADQIEAMNHVD------YVRFGREVVNRLFTITNFVRTG 173 Query: 183 GFIFVAGLALMSMFLISNTIRVTILARRKEIGIMKLVGATNYFIRWPFFIEGALIGLIGS 242 G + + G+ L +MFLISNTI++TI AR++EI IMKLVGATN FIRWPFFIEG L+G+IG+ Sbjct: 174 GLVLIIGMMLTAMFLISNTIKLTIFARKREIQIMKLVGATNGFIRWPFFIEGILLGVIGA 233 Query: 243 LVTSGALYAGYSSLVSSVQGDPMLGL-QLIPFQDXXXXXXXXXXXXXXXXXXXXSTVSIR 301 L+ L+ GY + ++ G L L P S +S+R Sbjct: 234 LIPIAILWGGYYYVYNNFGGQVQNFLFSLTPVTPSILQVAVVLVAVGAFIGMWGSVMSVR 293 Query: 302 KFLKV 306 KFLKV Sbjct: 294 KFLKV 298 >A7Z994.1 A7Z994_BACA2 FtsX Length = 299 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/310 (38%), Positives = 173/310 (55%), Gaps = 15/310 (4%) Query: 1 MVMSFKTFLRHVREGFKNVFRNGWMSVASITXXXXXXXXXXXXXXXXXXXXAIADKADSQ 60 MV+ K RH+RE FK++ RN WM+ ASI+ +A A+ + Sbjct: 1 MVLMIKILGRHLRESFKSLGRNTWMTFASISAVTVTLILVGVFLVIMLNLNNMAKNAEKE 60 Query: 61 VQINVHLALNTDQKMRETLENEIGSMPEVSKVEFVSKEQGLKEFREDMGPDAAELLEGFD 120 V+I V + L +++K ++TL+NEI + + VEF SK++ L + + G D+ + ++ D Sbjct: 61 VEIKVLIDLTSNKKTQDTLQNEIKDISGIQSVEFSSKDKELDQLVKSFG-DSGKAMKMQD 119 Query: 121 EDNNPLPDKLLVEVIQPTTVPFVAEKIEALNKTHEEKPIYKVNYGKGSVETLFKVTKAVR 180 ++N PL + +V+ P P VA+KIE L+ +YKV YGK V LFK+ R Sbjct: 120 QEN-PLNNAFIVKTTDPHDTPKVAKKIEKLDH------VYKVTYGKEEVSRLFKIVGVSR 172 Query: 181 NIGFIFVAGLALMSMFLISNTIRVTILARRKEIGIMKLVGATNYFIRWPFFIEGALIGLI 240 NIG + GL +MFLISNTI++TI ARRKEI IMKLVGATN+FIRWPFF+EG L+G+ Sbjct: 173 NIGIALIIGLLFTAMFLISNTIKITIFARRKEIEIMKLVGATNWFIRWPFFLEGLLLGVF 232 Query: 241 GSLVTSGALYAGYSSLVS----SVQGDPMLGLQLIPFQDXXXXXXXXXXXXXXXXXXXXS 296 GS++ + + Y S+V+ VQG + L+P+ S Sbjct: 233 GSIIPIALVLSTYQSMVAWVAPKVQGS---FVSLLPYSPFVFQVSLVLILIGAVIGVWGS 289 Query: 297 TVSIRKFLKV 306 SIRKFL+V Sbjct: 290 LTSIRKFLRV 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,416,674,138 Number of extensions: 52770372 Number of successful extensions: 162292 Number of sequences better than 1.0e-05: 913 Number of HSP's gapped: 161507 Number of HSP's successfully gapped: 913 Length of query: 306 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 171 Effective length of database: 1,788,859,178 Effective search space: 305894919438 Effective search space used: 305894919438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)