BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0004.p
         (305 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7C9.1 B3K7C9_9BACI Peptidase M23B                                  190   2e-46
B1DE79.1 B1DE79_9BACL Peptidase M23B                                  101   7e-20
A1HSZ9.1 A1HSZ9_9FIRM Peptidase M23B                                   57   3e-06
C0GF93.1 C0GF93_9FIRM Peptidase M23                                    56   3e-06

>B3K7C9.1 B3K7C9_9BACI Peptidase M23B
          Length = 422

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 141/237 (59%)

Query: 18  FQPSDGYAKKTTVAEIXXXXXXXXXXXXXXXXXXXXXXSRNQEAKHYLNKTNLNLQYVLD 77
            QP+ G A+K T A++                         QEA+HY NKT  NL+YV++
Sbjct: 18  IQPTVGQAEKKTSADVDKELRVLQEQVKKARAQKSKAADDKQEAQHYKNKTTKNLKYVME 77

Query: 78  QIDQVKGQMTDISGKIASTEKSLNITXXXXXXXXXXXXSREKLLESRVRLMYTDGAVSYX 137
           QI  V  ++T IS KI  TE  L  T            SREKLLESR+RL+Y DG VSY 
Sbjct: 78  QISIVSNELTKISVKIEETEDLLRTTTKELEAAEERIASREKLLESRIRLIYMDGQVSYL 137

Query: 138 XXXXXXXXXXXXXXRADSLKMIVDQDQDLLVQHKLDKQTVIAKKQELEGQYAQAKQLYTD 197
                         RADSLK IVDQDQDLLVQHK DK  VI KK+ELEGQYA AK LY  
Sbjct: 138 DVLLSATSFSDFIERADSLKTIVDQDQDLLVQHKQDKLLVIDKKKELEGQYATAKDLYGQ 197

Query: 198 LESQRSTLKEKEAEKQELIAYYDKEIQETDGLTEEQDAKLVQLASQRSALENKKDQI 254
           +E ++S L EKE EK+ L+A YD++I++ D LTEEQD  LV LAS+RS L+ +K+++
Sbjct: 198 MEDRKSILNEKEQEKRVLLAQYDQDIEDADILTEEQDRMLVALASKRSDLQKEKNKL 254


>B1DE79.1 B1DE79_9BACL Peptidase M23B
          Length = 390

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 97/178 (54%)

Query: 78  QIDQVKGQMTDISGKIASTEKSLNITXXXXXXXXXXXXSREKLLESRVRLMYTDGAVSYX 137
           Q+DQV   +  +  ++ + E  L                R++LL+SR++LMY +GAVSY 
Sbjct: 77  QLDQVADNLNYVQDQVDTKEAELQKAGKELDTAIEQVKERDELLQSRLKLMYENGAVSYL 136

Query: 138 XXXXXXXXXXXXXXRADSLKMIVDQDQDLLVQHKLDKQTVIAKKQELEGQYAQAKQLYTD 197
                         R DSL  I+ QD+ +L QHK D+  V  KK  +E    + K +YT 
Sbjct: 137 EVLFSATSFSDFLDRFDSLHSILSQDRSILEQHKKDQAMVEEKKAHVETALGEVKTMYTK 196

Query: 198 LESQRSTLKEKEAEKQELIAYYDKEIQETDGLTEEQDAKLVQLASQRSALENKKDQIK 255
           L+  +  L EKE EK+ LIA Y+KE++E + ++EEQ+ +L+ LA + S L  KK+ IK
Sbjct: 197 LQKYKGELDEKEGEKEVLIASYNKEMEELEDISEEQEQQLLALAKKVSDLNKKKNAIK 254


>A1HSZ9.1 A1HSZ9_9FIRM Peptidase M23B
          Length = 373

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 73/146 (50%)

Query: 72  LQYVLDQIDQVKGQMTDISGKIASTEKSLNITXXXXXXXXXXXXSREKLLESRVRLMYTD 131
           L+ +  ++D V+G+   I  ++A+TE+ + +              R ++L  R+R +Y +
Sbjct: 61  LRLIQGELDTVQGEYNAIQAQLAATEQQIELNQAILAKAEKNLAERSQILNKRIRDIYKN 120

Query: 132 GAVSYXXXXXXXXXXXXXXXRADSLKMIVDQDQDLLVQHKLDKQTVIAKKQELEGQYAQA 191
           G +SY               R D LK ++ QD  L+ Q K +++ V+ KK ELE   A  
Sbjct: 121 GQISYLDVLLGANDFADFATRMDLLKRVISQDVALIAQVKAERELVLQKKAELERDRAAI 180

Query: 192 KQLYTDLESQRSTLKEKEAEKQELIA 217
            +L     +++  ++ ++AE++ +++
Sbjct: 181 LELKKAAAAKKQAIEARKAEREAVLS 206


>C0GF93.1 C0GF93_9FIRM Peptidase M23
          Length = 401

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 82/159 (51%)

Query: 82  VKGQMTDISGKIASTEKSLNITXXXXXXXXXXXXSREKLLESRVRLMYTDGAVSYXXXXX 141
           ++ ++  I  +I++TE  +                 ++++  R+R M+ +GAVSY     
Sbjct: 74  IQAELRSIGNQISATEAEIEKIVAELADAEASIKEMDQVMAVRLRAMHENGAVSYLDVLF 133

Query: 142 XXXXXXXXXXRADSLKMIVDQDQDLLVQHKLDKQTVIAKKQELEGQYAQAKQLYTDLESQ 201
                     R + L++I+ +D+ +L + + ++  ++A K+ELEG+  + + L  +  ++
Sbjct: 134 SSSSFGEFLTRYNDLQLIIAEDKAILTELREERARIVAMKEELEGRRQELELLRRENIAK 193

Query: 202 RSTLKEKEAEKQELIAYYDKEIQETDGLTEEQDAKLVQL 240
           R+ L++K+AE+Q L +  ++  +E D      +A+  QL
Sbjct: 194 RTDLEKKQAEQQRLASALEEAFREMDEAVSSMEAEAKQL 232


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.125    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,025,852,384
Number of extensions: 32430421
Number of successful extensions: 178457
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 178637
Number of HSP's successfully gapped: 22
Length of query: 305
Length of database: 3,060,696,203
Length adjustment: 135
Effective length of query: 170
Effective length of database: 1,788,859,178
Effective search space: 304106060260
Effective search space used: 304106060260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 131 (55.1 bits)