BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0003.p
         (108 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7C9.1 B3K7C9_9BACI Peptidase M23B                                  195   1e-48
B1DE79.1 B1DE79_9BACL Peptidase M23B                                  150   2e-35
B0CBT0.1 B0CBT0_ACAM1 Peptidase M23 domain protein                    140   4e-32
A8ZL70.1 A8ZL70_ACAM1 Peptidase M23 domain protein                    139   7e-32
B0KB03.1 B0KB03_THEP3 Peptidase M23B                                  131   2e-29

>B3K7C9.1 B3K7C9_9BACI Peptidase M23B
          Length = 422

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/108 (79%), Positives = 96/108 (88%)

Query: 1   VTGEVGKMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIRE 60
           VTGEVGKMHTG DFAVPQGT I AA+SGTVI+AEWWSGYG  V++DHGGGVWTLYGHIR 
Sbjct: 315 VTGEVGKMHTGQDFAVPQGTEIRAAESGTVILAEWWSGYGNCVIVDHGGGVWTLYGHIRN 374

Query: 61  GGIKVSVGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
           GGIKVS GD+VSRGQ IAE G+TG+ TGPHLHFEVR++G PV+P PYL
Sbjct: 375 GGIKVSEGDKVSRGQKIAEVGSTGQSTGPHLHFEVRVNGSPVNPSPYL 422


>B1DE79.1 B1DE79_9BACL Peptidase M23B
          Length = 390

 Score =  150 bits (380), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/104 (64%), Positives = 79/104 (75%)

Query: 5   VGKMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIK 64
           V K+H G DFAVPQGT ++AA+SG VIVA+ WSGYG T++IDHG G+WTLYGH+R GGI 
Sbjct: 286 VKKLHAGIDFAVPQGTDVYAAESGVVIVAQVWSGYGNTIIIDHGNGLWTLYGHLRNGGIM 345

Query: 65  VSVGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
           V  G  V +G+ IAESG TG  TGPHLHFEVR +   VDP  YL
Sbjct: 346 VEKGQSVKKGEKIAESGNTGDSTGPHLHFEVRKNQVAVDPAGYL 389


>B0CBT0.1 B0CBT0_ACAM1 Peptidase M23 domain protein
          Length = 411

 Score =  140 bits (353), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/103 (61%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 6   GKMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKV 65
           G+ H GTDF  P G  I A+DSGTVIVAEW+ GYG  V+IDHG G+ TLYGH  E  + V
Sbjct: 311 GRFHAGTDFGAPTGAPIFASDSGTVIVAEWYGGYGNAVIIDHGNGLTTLYGHCSE--LYV 368

Query: 66  SVGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
           +VG  V RGQTIA  G+TG  TGPHLHFEVR+ G+P +P+ YL
Sbjct: 369 TVGQGVQRGQTIAAVGSTGLSTGPHLHFEVRVQGEPTEPLAYL 411


>A8ZL70.1 A8ZL70_ACAM1 Peptidase M23 domain protein
          Length = 386

 Score =  139 bits (350), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/102 (63%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 7   KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66
           + H GTDF  P G  I AADSGTVIVAEW+ GYG TV++DHG G+ TLYGH  E  + V+
Sbjct: 287 RFHAGTDFGAPTGAPIFAADSGTVIVAEWYGGYGNTVIVDHGNGLTTLYGHCSE--LYVT 344

Query: 67  VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
           VG  V RGQTIA  G+TG  TGPHLHFEVR  G+PVDP+ YL
Sbjct: 345 VGQGVQRGQTIAAIGSTGLSTGPHLHFEVRQQGEPVDPLAYL 386


>B0KB03.1 B0KB03_THEP3 Peptidase M23B
          Length = 452

 Score =  131 bits (329), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 6   GKMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKV 65
           G+ HTG D A PQG+ I+AAD GTVI + W SGYGY V IDH  G  T YGH  +  + V
Sbjct: 349 GRFHTGVDIAAPQGSPIYAADGGTVIFSGWESGYGYLVKIDHHNGYVTYYGHASK--LLV 406

Query: 66  SVGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108
             GD+V++GQ IA  G+TGR TGPHLHFEVR +G P+DPMP+L
Sbjct: 407 KKGDKVAKGQKIALVGSTGRATGPHLHFEVRKNGVPIDPMPFL 449


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 782,819,381
Number of extensions: 33205904
Number of successful extensions: 92203
Number of sequences better than 1.0e-05: 4727
Number of HSP's gapped: 87971
Number of HSP's successfully gapped: 4727
Length of query: 108
Length of database: 3,060,696,203
Length adjustment: 76
Effective length of query: 32
Effective length of database: 2,344,699,063
Effective search space: 75030370016
Effective search space used: 75030370016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)