BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0002.p (489 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE78.1 B1DE78_9BACL Carboxyl-terminal protease EC=3.4.21.102 526 e-147 C5D7Q9.1 C5D7Q9_9BACI Carboxyl-terminal protease EC=3.4.21.102 417 e-114 C3J1M1.1 C3J1M1_9BACI Carboxyl-terminal protease EC=3.4.21.102 414 e-114 B7Y857.1 B7Y857_9BACI Carboxyl-terminal protease EC=3.4.21.102 414 e-114 Q5KVA9.1 Q5KVA9_GEOKA Carboxyl-terminal processing protease 414 e-113 >B1DE78.1 B1DE78_9BACL Carboxyl-terminal protease EC=3.4.21.102 Length = 486 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/432 (59%), Positives = 328/432 (75%) Query: 50 LQEKESQKLGTALSLIEGYYYEKVDRTKLIDGAVNGMMEALGDPYSNYMGKETAEKFEES 109 L +KE K+ L LIE Y++ +DR +L+DGAV GMME+L DPYS YM K+ A++F ES Sbjct: 55 LNKKEESKINAVLGLIETKYFKDIDRDELLDGAVRGMMESLDDPYSVYMEKDVAKQFSES 114 Query: 110 IEGSFSGIGAEVSSENGKVVIVSPIKGSPAEKAGLKAKDVILSVNGETLEGMELNDAVAK 169 IEGSFSGIGAEV+ E GKVV+V+PIKGSPAE+AGL AKDV+LSVNGE L+G+ LNDAVAK Sbjct: 115 IEGSFSGIGAEVTLEKGKVVVVAPIKGSPAERAGLLAKDVVLSVNGEKLDGLTLNDAVAK 174 Query: 170 IRGPKGSKATLKIQRTGAAEPLEYVLTRDDVKLETVYAKLEKDGVGVIEVTQFSMNTAER 229 IRGP+G+KA L+I+R G +P++ +L RDD+ +ETVYA L DGVGVIE+ QFS+NTA+R Sbjct: 175 IRGPRGTKAKLRIERAGNTQPIDLILVRDDIDVETVYANLRSDGVGVIEIRQFSLNTADR 234 Query: 230 FKEELGKLEKQGMKGLVIDVRNDPGGVLPVVIDMAEQFVPAGKTIVQVEEKGKKPEVSPS 289 FKEEL KLEKQGMKGLVIDVRNDPGG+LPVV+++A+QF+P G+TIVQVE++ E + S Sbjct: 235 FKEELAKLEKQGMKGLVIDVRNDPGGILPVVVEIAQQFIPKGETIVQVEDRDGHREKTNS 294 Query: 290 KGSSKKYPVVVLMNKGSASASEILAGALQQSAGAKLIGENSFGKGTVQTSFDKQLGDGSL 349 +G K YP+ VLMNKGSASASEILAGALQ+ A A L+GE S+GKGTVQ S++K LGDGSL Sbjct: 295 QGGGKTYPIAVLMNKGSASASEILAGALQERAAAILVGETSYGKGTVQVSYNKTLGDGSL 354 Query: 350 LKITIAKWLTPNGTWIHGKGIKPDIAVAQPDYFSVAPINKSVSLQYNMNNADVKSAQTML 409 +K+TIAKWLTP+G WIH KGIKP + V P ++VA + + +L+ +M +++AQ ML Sbjct: 355 VKMTIAKWLTPDGNWIHQKGIKPTVEVQPPKLYTVARLTLTETLRKDMLGEQIRNAQVML 414 Query: 410 DGLGYKPGRKDGYFDTATKDAVKKFQSASKLKATGIVDXXXXXXXXXXXXXXXQNPVNDN 469 GLGY R+DGY++ +T+ AVK FQ+AS L TG +D ++ ND Sbjct: 415 SGLGYATQREDGYYNASTEQAVKDFQNASGLPVTGEIDTKTAASLEQAVVKWIKDQKNDK 474 Query: 470 QLNRGIAEVQKE 481 QL I V ++ Sbjct: 475 QLLEAIQAVSRK 486 >C5D7Q9.1 C5D7Q9_9BACI Carboxyl-terminal protease EC=3.4.21.102 Length = 480 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/424 (52%), Positives = 287/424 (67%), Gaps = 6/424 (1%) Query: 52 EKESQKLGTALSLIEGYYYEKVDRTKLIDGAVNGMMEALGDPYSNYMGKETAEKFEESIE 111 EKE +K+ A LI+ Y EKVD KLI GA+ GM+ L DPYS YM +ET+E+F ES++ Sbjct: 50 EKELKKVEQAYELIKKRYVEKVDDDKLIQGAIQGMISTLNDPYSVYMDEETSEQFTESLD 109 Query: 112 GSFSGIGAEVSSENGKVVIVSPIKGSPAEKAGLKAKDVILSVNGETLEGMELNDAVAKIR 171 SF GIGAEVS NGKV IV+PIK SPAEKAGLK D IL VNGE+LEG++L +AV KIR Sbjct: 110 SSFEGIGAEVSMMNGKVTIVAPIKNSPAEKAGLKPNDQILRVNGESLEGLDLYEAVLKIR 169 Query: 172 GPKGSKATLKIQRTGAAEPLEYVLTRDDVKLETVYAKLEK---DGVGVIEVTQFSMNTAE 228 G KG+ L I R G E ++ + RD++ +ETVY ++ VG +EVT FS NTA+ Sbjct: 170 GEKGTTVQLDILRPGVKEVIKVKVVRDEIPIETVYDSVKTYNGKKVGYLEVTSFSENTAK 229 Query: 229 RFKEELGKLEKQGMKGLVIDVRNDPGGVLPVVIDMAEQFVPAGKTIVQVEEK-GKKPEVS 287 FK++L +LE + + GL+IDVR +PGG L V ++ +QF+P K VQ+EE+ G K Sbjct: 230 DFKKKLAELESKHIDGLIIDVRGNPGGYLQSVEEILKQFIPKDKPYVQIEERNGDKQRFY 289 Query: 288 PSKGSSKKYPVVVLMNKGSASASEILAGALQQSAGAKLIGENSFGKGTVQTSFDKQLGDG 347 K YP+ VL++KGSASASEILAGA++++ G KL+GE SFGKGTVQ + +GDG Sbjct: 290 SDLTKKKPYPIAVLIDKGSASASEILAGAMKEAGGYKLVGETSFGKGTVQQAI--PMGDG 347 Query: 348 SLLKITIAKWLTPNGTWIHGKGIKPDIAVAQPDYFSVAPINKSVSLQYNMNNADVKSAQT 407 S +K+T+ KWLTP+G WIH KG+KPD+ V QPDYF V+P++ L ++MNN VKSAQ Sbjct: 348 SNIKLTLYKWLTPDGHWIHKKGVKPDVEVKQPDYFHVSPLHIEKELSFDMNNEQVKSAQQ 407 Query: 408 MLDGLGYKPGRKDGYFDTATKDAVKKFQSASKLKATGIVDXXXXXXXXXXXXXXXQNPVN 467 ML GLG+ PGR DGYF T+ AVK FQ A+KL TG +D ++ N Sbjct: 408 MLKGLGFDPGRTDGYFSKETESAVKAFQKANKLPQTGKIDKNTAEVLQAKVMDAIRDDNN 467 Query: 468 DNQL 471 D QL Sbjct: 468 DVQL 471 >C3J1M1.1 C3J1M1_9BACI Carboxyl-terminal protease EC=3.4.21.102 Length = 482 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/478 (46%), Positives = 305/478 (63%), Gaps = 6/478 (1%) Query: 2 LKKSTAAFMIVAALLCGSLLTLGVTGYADIFXXXXXXXXXXXXXXXXXLQEKESQKLGTA 61 +KKST A ++ ++L G+ T AD +E +K+ A Sbjct: 1 MKKSTTAALMAISMLIGAGGTYAGLQLADRPMEGSLSTIVSNEPSKSTNDSEEMKKIRQA 60 Query: 62 LSLIEGYYYEKVDRTKLIDGAVNGMMEALGDPYSNYMGKETAEKFEESIEGSFSGIGAEV 121 LI+ Y EKVD KL +GA+ GM+ L DPYS YM ET E+F ES++ SF GIGAEV Sbjct: 61 YELIKNRYVEKVDEEKLTEGAIQGMINTLHDPYSVYMDAETTEQFNESLDSSFEGIGAEV 120 Query: 122 SSENGKVVIVSPIKGSPAEKAGLKAKDVILSVNGETLEGMELNDAVAKIRGPKGSKATLK 181 S +GKV IV+PIK SPAEKAGLK D IL VNGE+LEG++L +AV KIRG KG+ L Sbjct: 121 SMIDGKVTIVAPIKNSPAEKAGLKPNDQILRVNGESLEGLDLYEAVLKIRGKKGTTVELD 180 Query: 182 IQRTGAAEPLEYVLTRDDVKLETVYAKLEK---DGVGVIEVTQFSMNTAERFKEELGKLE 238 I R G ++ + RD++ ++TVY ++ G +++T FS NTA FK++L KLE Sbjct: 181 ILRPGVKNVMKVKVVRDEIPIQTVYDSIKTYNGKKAGYLQITSFSENTAADFKKKLAKLE 240 Query: 239 KQGMKGLVIDVRNDPGGVLPVVIDMAEQFVPAGKTIVQVEEK-GKKPEVSPSKGSSKKYP 297 + + GL+IDVR +PGG L V ++ +Q +P GK VQ+EE+ G + + + K YP Sbjct: 241 AEHIDGLIIDVRGNPGGYLQSVEEILKQLIPKGKPYVQIEERDGDRQKFYSDLTAKKPYP 300 Query: 298 VVVLMNKGSASASEILAGALQQSAGAKLIGENSFGKGTVQTSFDKQLGDGSLLKITIAKW 357 +VVL++KGSASASEILAGA++++ G KL+GE +FGKGTVQ + +GDGS +K+T+ KW Sbjct: 301 IVVLIDKGSASASEILAGAMKEAGGYKLVGEATFGKGTVQQAI--PMGDGSNIKLTLYKW 358 Query: 358 LTPNGTWIHGKGIKPDIAVAQPDYFSVAPINKSVSLQYNMNNADVKSAQTMLDGLGYKPG 417 LTP+G WIH KGIKPD+AVAQPDYF VAP++ L+Y+MN+ + +AQ ML GLG+ PG Sbjct: 359 LTPDGHWIHKKGIKPDVAVAQPDYFHVAPLHVEKPLRYDMNDEQIANAQKMLKGLGFNPG 418 Query: 418 RKDGYFDTATKDAVKKFQSASKLKATGIVDXXXXXXXXXXXXXXXQNPVNDNQLNRGI 475 R DGYF T+ AV+ FQ A++L TG +D ++P +D QL + + Sbjct: 419 RTDGYFSKETEQAVQAFQKANQLPVTGRIDETTADVLQTKIMEAVRDPNHDVQLKKAL 476 >B7Y857.1 B7Y857_9BACI Carboxyl-terminal protease EC=3.4.21.102 Length = 482 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/478 (46%), Positives = 305/478 (63%), Gaps = 6/478 (1%) Query: 2 LKKSTAAFMIVAALLCGSLLTLGVTGYADIFXXXXXXXXXXXXXXXXXLQEKESQKLGTA 61 +KKST A ++ ++L G+ T AD +E +K+ A Sbjct: 1 MKKSTTAALMAISMLIGAGGTYAGLQLADRPMEGSLSTIVSNEPSKSTNDSEEMKKIRQA 60 Query: 62 LSLIEGYYYEKVDRTKLIDGAVNGMMEALGDPYSNYMGKETAEKFEESIEGSFSGIGAEV 121 LI+ Y EKVD KL +GA+ GM+ L DPYS YM ET E+F ES++ SF GIGAEV Sbjct: 61 YELIKNRYVEKVDEEKLTEGAIQGMINTLHDPYSVYMDAETTEQFNESLDSSFEGIGAEV 120 Query: 122 SSENGKVVIVSPIKGSPAEKAGLKAKDVILSVNGETLEGMELNDAVAKIRGPKGSKATLK 181 S +GKV IV+PIK SPAEKAGLK D IL VNGE+LEG++L +AV KIRG KG+ L Sbjct: 121 SMIDGKVTIVAPIKNSPAEKAGLKPNDQILRVNGESLEGLDLYEAVLKIRGKKGTTVELD 180 Query: 182 IQRTGAAEPLEYVLTRDDVKLETVYAKLEK---DGVGVIEVTQFSMNTAERFKEELGKLE 238 I R G ++ + RD++ ++TVY ++ G +++T FS NTA FK++L KLE Sbjct: 181 ILRPGVKNVMKVKVVRDEIPIQTVYDSIKTYNGKKAGYLQITSFSENTAADFKKKLAKLE 240 Query: 239 KQGMKGLVIDVRNDPGGVLPVVIDMAEQFVPAGKTIVQVEEK-GKKPEVSPSKGSSKKYP 297 + + GL+IDVR +PGG L V ++ +Q +P GK VQ+EE+ G + + + K YP Sbjct: 241 AEHIDGLIIDVRGNPGGYLQSVEEILKQLIPKGKPYVQIEERDGDRQKFYSDLTAKKPYP 300 Query: 298 VVVLMNKGSASASEILAGALQQSAGAKLIGENSFGKGTVQTSFDKQLGDGSLLKITIAKW 357 +VVL++KGSASASEILAGA++++ G KL+GE +FGKGTVQ + +GDGS +K+T+ KW Sbjct: 301 IVVLIDKGSASASEILAGAMKEAGGYKLVGEATFGKGTVQQAI--PMGDGSNIKLTLYKW 358 Query: 358 LTPNGTWIHGKGIKPDIAVAQPDYFSVAPINKSVSLQYNMNNADVKSAQTMLDGLGYKPG 417 LTP+G WIH KGIKPD+AVAQPDYF VAP++ L+Y+MN+ + +AQ ML GLG+ PG Sbjct: 359 LTPDGHWIHKKGIKPDVAVAQPDYFHVAPLHVEKPLRYDMNDEQIANAQKMLKGLGFNPG 418 Query: 418 RKDGYFDTATKDAVKKFQSASKLKATGIVDXXXXXXXXXXXXXXXQNPVNDNQLNRGI 475 R DGYF T+ AV+ FQ A++L TG +D ++P +D QL + + Sbjct: 419 RTDGYFSKETEQAVQAFQKANQLPVTGRIDETTADVLQTKIMEAVRDPNHDVQLKKAL 476 >Q5KVA9.1 Q5KVA9_GEOKA Carboxyl-terminal processing protease Length = 482 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 220/478 (46%), Positives = 304/478 (63%), Gaps = 6/478 (1%) Query: 2 LKKSTAAFMIVAALLCGSLLTLGVTGYADIFXXXXXXXXXXXXXXXXXLQEKESQKLGTA 61 +KKST A ++ ++L G+ T AD +E +K+ A Sbjct: 1 MKKSTTAALMAISMLIGAGGTYAGLQLADRPMEGSLSTIVSNEPSKSTNDSEEMKKIRQA 60 Query: 62 LSLIEGYYYEKVDRTKLIDGAVNGMMEALGDPYSNYMGKETAEKFEESIEGSFSGIGAEV 121 LI+ Y EKVD KL +GA+ GM+ L DPYS YM ET E+F ES++ SF GIGAEV Sbjct: 61 YELIKNRYVEKVDEEKLTEGAIQGMINTLHDPYSVYMDAETTEQFNESLDSSFEGIGAEV 120 Query: 122 SSENGKVVIVSPIKGSPAEKAGLKAKDVILSVNGETLEGMELNDAVAKIRGPKGSKATLK 181 S +GKV IV+PIK SPAEKAGLK D IL VNGE+LEG++L +AV KIRG KG+ L Sbjct: 121 SMIDGKVTIVAPIKNSPAEKAGLKPNDQILRVNGESLEGLDLYEAVLKIRGKKGTTVELD 180 Query: 182 IQRTGAAEPLEYVLTRDDVKLETVYAKLEK---DGVGVIEVTQFSMNTAERFKEELGKLE 238 I R G ++ + RD++ ++TVY ++ G +++T FS NTA FK++L KLE Sbjct: 181 ILRPGVKNVMKVKVVRDEIPIQTVYDSIKTYNGKKAGYLQITSFSENTAADFKKKLAKLE 240 Query: 239 KQGMKGLVIDVRNDPGGVLPVVIDMAEQFVPAGKTIVQVEEK-GKKPEVSPSKGSSKKYP 297 + + GL+IDVR +PGG L V ++ +Q +P GK VQ+EE+ G + + + K YP Sbjct: 241 AEHIDGLIIDVRGNPGGYLQSVEEILKQLIPKGKPYVQIEERDGDRQKFYSDLTAKKPYP 300 Query: 298 VVVLMNKGSASASEILAGALQQSAGAKLIGENSFGKGTVQTSFDKQLGDGSLLKITIAKW 357 +VVL++KGSASASEILAGA++++ G KL+GE +FGKGTVQ + +GDGS +K+T+ KW Sbjct: 301 IVVLIDKGSASASEILAGAMKEAGGYKLVGETTFGKGTVQQAI--PMGDGSNIKLTLYKW 358 Query: 358 LTPNGTWIHGKGIKPDIAVAQPDYFSVAPINKSVSLQYNMNNADVKSAQTMLDGLGYKPG 417 LTP+G WIH KGIKPD+AV QPDYF VAP++ L+Y+MN+ + +AQ ML GLG+ PG Sbjct: 359 LTPDGHWIHKKGIKPDVAVVQPDYFHVAPLHVEKPLRYDMNDEQIANAQKMLKGLGFNPG 418 Query: 418 RKDGYFDTATKDAVKKFQSASKLKATGIVDXXXXXXXXXXXXXXXQNPVNDNQLNRGI 475 R DGYF T+ AV+ FQ A++L TG +D ++P +D QL + + Sbjct: 419 RTDGYFSKETEQAVQAFQKANQLPVTGRIDEATADALQTKIMEAVRDPNHDVQLKKAL 476 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.131 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,606,013,905 Number of extensions: 107253214 Number of successful extensions: 265203 Number of sequences better than 1.0e-05: 1826 Number of HSP's gapped: 259151 Number of HSP's successfully gapped: 1831 Length of query: 489 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 349 Effective length of database: 1,741,754,103 Effective search space: 607872181947 Effective search space used: 607872181947 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)