BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0001.p (436 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7C6.1 B3K7C6_9BACI Putative uncharacterized protein 337 2e-90 B1DE77.1 B1DE77_9BACL Conserved hypothetical serine protease 251 8e-65 C0Z6Q9.1 C0Z6Q9_BREBN Conserved hypothetical membrane protein 183 4e-44 A6CNB0.1 A6CNB0_9BACI Putative uncharacterized protein 119 4e-25 B7GL59.1 B7GL59_ANOFW Membrane protein containing C-terminal PDZ... 114 1e-23 >B3K7C6.1 B3K7C6_9BACI Putative uncharacterized protein Length = 440 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/422 (44%), Positives = 232/422 (54%), Gaps = 5/422 (1%) Query: 1 MPELLTSWGTAVVHLLIQPXXXXXXXXXXXXXRRQVALERKFIHVKLHSWGRETWRTVWX 60 + +LL A + LL QP RRQV +ERK HVKLHSWG +TWRT Sbjct: 4 LKQLLMYGIDAGIQLLTQPFYYISILFVMLFYRRQVLVERKLFHVKLHSWGLQTWRTFLG 63 Query: 61 XXXXXXXXXXXXXXXXISLTGTAVAIIWAVSLVLMLFRVRYLCFAYSIGLLGILQFILSF 120 ISL+ A+ IW SL+LMLF +RYLCFAYSIGLLGI+QF+L + Sbjct: 64 GLAAGIGVSIVVAFLGISLSLEAIICIWVTSLILMLFHIRYLCFAYSIGLLGIIQFVLGW 123 Query: 121 FPDTLQSGLAGTIATALREMDIPXXXXXXXXXXXXXXXXXRWQGARLAAPLFLKGKRGKV 180 FP+ G + + +DIP + QG+ A PLFL+GKRGK+ Sbjct: 124 FPNWQPEGWIHQVTATILGLDIPALLALSAVLHFAEALLVKLQGSGFATPLFLEGKRGKL 183 Query: 181 VGGYQLEAFWPLPLFLLIPSGAGIGDLPWHPXX-----XXXXXXVSLPVIIGFSEMTQGL 235 VGGY +++FWPLPLFLL+P+ G LPW P ++LPV+IGF EMTQ + Sbjct: 184 VGGYHMQSFWPLPLFLLVPAVGGGSVLPWTPFFGGDAWSTGFTMMALPVVIGFGEMTQSM 243 Query: 236 LPGRKSARTAGRXXXXXXXXXXXXXXXXXXXXXTVXXXXXXXXXXXXXGWYSALEERSLS 295 LP K+ T+ R T+ WYS EE+ S Sbjct: 244 LPQEKAGITSKRLIFYGAIVLALSLLAEWWSPLTIVAALAALLLHEGLVWYSRYEEQQRS 303 Query: 296 PIFVHPPAGRKVLAVLPDSPAQELGILPGEILLKVNGVLLTDAAQLHEALRMNPAFCKLE 355 P+FVHP G +VLAVLPDSPA ELGIL GE +LKVNG L+ QLH ALR NPAFCKLE Sbjct: 304 PMFVHPVRGLRVLAVLPDSPASELGILAGETILKVNGKLIHSKEQLHSALRQNPAFCKLE 363 Query: 356 VQNRAGESKYLQRAIYDGDHHQLGIILVPEPDGWVTAEAKSSSIFSIIAMKTGASRRSLP 415 VQN GESK+LQRAIY GDHHQLG I+ P+P + K S+ +++A K + Sbjct: 364 VQNHQGESKFLQRAIYAGDHHQLGAIVAPDPRDGIAVGLKPVSLITLLANKLHIRSKRGA 423 Query: 416 SG 417 SG Sbjct: 424 SG 425 >B1DE77.1 B1DE77_9BACL Conserved hypothetical serine protease Length = 437 Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 149/414 (35%), Positives = 209/414 (50%), Gaps = 6/414 (1%) Query: 4 LLTSWGTAVVHLLIQPXXXXXXXXXXXXXRRQVALERKFIHVKLHSWGRETWRTVWXXXX 63 LL +G A VHLL QP RQ++LER+ V+LH W R + + Sbjct: 7 LLEQFGKAFVHLLAQPFYYIAVLFIILQYTRQISLERRMFAVRLHIWPRLVAKAMLAGLA 66 Query: 64 XXXXXXXXXXXXXISLTGTAVAIIWAVSLVLMLFRVRYLCFAYSIGLLGILQFILSFFPD 123 I+LTG AV +W ++VL+LFR+RYLCFAY G L +LQ+I+ F Sbjct: 67 AGVLASVAGAFIGITLTGDAVLWLWGSAVVLLLFRIRYLCFAYGAGALALLQWIVGFTSL 126 Query: 124 TLQSGLAGTIATALREMDIPXXXXXXXXXXXXXXXXXRWQGARLAAPLFLKGKRGKVVGG 183 G G A +L +D+P R QG +LA PLFL+GKRGK+VGG Sbjct: 127 ENSDGWLGDAANSLAGLDMPGVFVLVALLHLVEAFLVRRQGNKLATPLFLEGKRGKLVGG 186 Query: 184 YQLEAFWPLPLFLLIPSGAG--IGDLPWHPXX----XXXXXXVSLPVIIGFSEMTQGLLP 237 Y L+ FWP+P+ LL+P+ G + DLPW P V+LP+IIGFSEMT+ +LP Sbjct: 187 YMLQGFWPVPMLLLVPAAGGTSVVDLPWTPLFGGDWTQGWTVVALPMIIGFSEMTRAMLP 246 Query: 238 GRKSARTAGRXXXXXXXXXXXXXXXXXXXXXTVXXXXXXXXXXXXXGWYSALEERSLSPI 297 K+ A W S E + SP+ Sbjct: 247 EAKARHAAKGLMWYSLLLTGAALLAWWQPALLPVAALCSLLLHEAIIWRSRAVESTQSPL 306 Query: 298 FVHPPAGRKVLAVLPDSPAQELGILPGEILLKVNGVLLTDAAQLHEALRMNPAFCKLEVQ 357 +V+ G ++L ++P +PA+ + + GEI+ KVNG + LHEAL+ N A KLEV Sbjct: 307 YVNDQRGLRILGIVPGTPAEAMKLYAGEIISKVNGARVYTKEDLHEALQNNSAMYKLEVL 366 Query: 358 NRAGESKYLQRAIYDGDHHQLGIILVPEPDGWVTAEAKSSSIFSIIAMKTGASR 411 NR GE K++QRA Y+G+HHQLG+IL P+ A A+ +++ ++ A R Sbjct: 367 NREGEIKFVQRARYEGEHHQLGVILSPDERATYYASAEPATLMDLLRRARTAKR 420 >C0Z6Q9.1 C0Z6Q9_BREBN Conserved hypothetical membrane protein Length = 422 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 122/398 (30%), Positives = 185/398 (46%), Gaps = 6/398 (1%) Query: 15 LLIQPXXXXXXXXXXXXXRRQVALERKFIHVKLHSWGRETWRTVWXXXXXXXXXXXXXXX 74 I P RRQ+ LER+ ++ S T R V Sbjct: 17 FFINPVFYLFLVFIYLHYRRQMNLERQLFSARIQSPLLSTIRAVGMGLVGGLLISLLSAG 76 Query: 75 XXISLTGTAVAIIWAVSLVLMLFRVRYLCFAYSIGLLGILQFILSFFPDTLQSGLAGTIA 134 + + + I+W ++L+L L R+R+LCFAY+ G+L IL I P I Sbjct: 77 LGVVVQAQDLWILWGLALILALIRLRFLCFAYAAGILAILHAITLVIPPVTDVPGLSYIW 136 Query: 135 TALREMDIPXXXXXXXXXXXXXXXXXRWQGARLAAPLFLKGKRGKVVGGYQLEAFW--PL 192 +R+ RW G R A+PLF++G+RG++VG Y L +FW P Sbjct: 137 EMIRQAKPLPLLALVAIMHLIEAMLVRWNGGRDASPLFVEGQRGRIVGAYLLHSFWLTPA 196 Query: 193 PLFLLIPSGAGIGDL----PWHPXXXXXXXXVSLPVIIGFSEMTQGLLPGRKSARTAGRX 248 LF+ + GA G L P+ + LP + GFS+MTQ + P RK+ + A Sbjct: 197 VLFVQMEPGAISGALYPGWPFFSPEAASFGLMLLPTVTGFSDMTQTMTPYRKATQVAKNL 256 Query: 249 XXXXXXXXXXXXXXXXXXXXTVXXXXXXXXXXXXXGWYSALEERSLSPIFVHPPAGRKVL 308 + ++S +ER +P F+ G KV+ Sbjct: 257 TLYALILLGLCALTVWFYPLIMLTAIFALFGHEALFFWSQYQERKRTPYFIQSSRGVKVM 316 Query: 309 AVLPDSPAQELGILPGEILLKVNGVLLTDAAQLHEALRMNPAFCKLEVQNRAGESKYLQR 368 V+P + A+E+GI PGEI++KVNG+ + + L+ AL+ NPAFCK+EV GE K++Q Sbjct: 317 GVIPGTRAEEIGITPGEIIVKVNGISVREKEDLYPALQANPAFCKMEVLTHEGELKFVQC 376 Query: 369 AIYDGDHHQLGIILVPEPDGWVTAEAKSSSIFSIIAMK 406 A+Y G+HHQLGII+VP+ + + K +S+ +I K Sbjct: 377 AVYAGNHHQLGIIVVPDANTRAFVDLKRASVVELIKQK 414 >A6CNB0.1 A6CNB0_9BACI Putative uncharacterized protein Length = 401 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 9/300 (3%) Query: 95 MLFRVRYLCFAYSIGLLGILQFILSFFPDTLQSGLAGTIATALREMDIPXXXXXXXXXXX 154 + F+ R L A+++G+ L + +F ++ L T L E + Sbjct: 97 LTFKTRLLTPAFTVGITYFLLLAIHYFE--VEMPLFHTYFERLNEGLLNAVVVLLGTLLL 154 Query: 155 XXXXXXRWQGARLAAPLFLKGKRGKVVGGYQLEAFWPLPLFLLIPSGAGIGDLPWH--PX 212 G + +P +K RG VG + + W +P+FLLIP G D+PW P Sbjct: 155 LEGVLISNSGWKKTSPRLIKSSRGLKVGAQEGKKLWVVPMFLLIP--VGTLDMPWTWWPV 212 Query: 213 XXXXXXXVSL---PVIIGFSEMTQGLLPGRKSARTAGRXXXXXXXXXXXXXXXXXXXXXT 269 SL P +IGF ++ +G LP T R + Sbjct: 213 FTVGSHTYSLILFPFLIGFGQLVRGTLPHISIKETGSRVFWLGALVLTIAVAGYFAPLVS 272 Query: 270 VXXXXXXXXXXXXXGWYSALEERSLSPIFVHPPAGRKVLAVLPDSPAQELGILPGEILLK 329 + + ++ S F G +LA+LP SPA+++ ++ GE++ K Sbjct: 273 IAGAILAVVGREWLAYRQRKQDSEKSYYFSRKSEGLMILAILPGSPAEKMSLVSGEMITK 332 Query: 330 VNGVLLTDAAQLHEALRMNPAFCKLEVQNRAGESKYLQRAIYDGDHHQLGIILVPEPDGW 389 VNG + + +EAL+ N A+CKLEV + G+ ++ Q A+Y+GDHH+LGII V E W Sbjct: 333 VNGFHVQTEEEFYEALQQNRAYCKLEVIDTNGQIRFAQGALYEGDHHELGIIFVEEDRDW 392 >B7GL59.1 B7GL59_ANOFW Membrane protein containing C-terminal PDZ domain Length = 405 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 160/385 (41%), Gaps = 11/385 (2%) Query: 7 SWGTAVVHLLIQPXXXXXXXXXXXXXRRQVALERKFIHVKLHSWGRETWRTVWXXXXXXX 66 +W A +QP R+V ER+ H +++ RE WR + Sbjct: 24 AWLKAFGTFWLQPLLYYAVMLALFIGWRRVQRERRDFHTRVYRSSRE-WRALIRSRSWFA 82 Query: 67 XXXXXXXXXXISLTGTAVAIIWA-VSLVLMLF-RVRYLCFAYSIGLLGILQFILSFFPDT 124 + + W V++V LF ++R L AY +G I+ F +SFF T Sbjct: 83 LIFSLVTVGIGVVLPNDTLVFWTIVTIVCSLFMQLRLLSAAY-VG--SIVIFTVSFFAQT 139 Query: 125 LQSG-LAGTIATALREMDIPXXXXXXXXXXXXXXXXXRWQGARLAAPLFLKGKRGKVVGG 183 + + E ++ +GA L++P + KRG V+G Sbjct: 140 EWTQPFFTRFFPHMTETNVTAVAFLIGLLLFIEMWLVDREGAELSSPRLVTSKRGLVIGE 199 Query: 184 YQLEAFWPLPLFLLIPSGAGIGDLP-WHPXXX--XXXXXVSLPVIIGFSEMTQGLLPGRK 240 ++ W +PLF+ +P G G+ W P V +P ++GFS+ Q LP Sbjct: 200 QFVQRLWLVPLFIPVP-GDGVQSFAAWWPIISDGNTYSFVLVPFLLGFSQRVQTGLPVHL 258 Query: 241 SARTAGRXXXXXXXXXXXXXXXXXXXXXTVXXXXXXXXXXXXXGWYSALEERSLSPIFVH 300 + TA R + + L E+ P F Sbjct: 259 AKWTAKRIGLLACVVSLLAIASYWIKPLAIVAAVVAILWREWIALSAKLYEQKCPPYFTK 318 Query: 301 PPAGRKVLAVLPDSPAQELGILPGEILLKVNGVLLTDAAQLHEALRMNPAFCKLEVQNRA 360 G +L VLP++PA ++ + GE+++KVNG + + + AL+ N AFCKLEV N Sbjct: 319 RATGLVILGVLPNTPADKMALSVGEVIVKVNGAPVATEDEFYAALQQNRAFCKLEVLNEN 378 Query: 361 GESKYLQRAIYDGDHHQLGIILVPE 385 GE ++ Q A+++G+HH+LG++ V + Sbjct: 379 GEVRFAQTALFEGEHHELGLLFVRD 403 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,029,311,284 Number of extensions: 71392912 Number of successful extensions: 149530 Number of sequences better than 1.0e-05: 137 Number of HSP's gapped: 149368 Number of HSP's successfully gapped: 141 Length of query: 436 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 297 Effective length of database: 1,751,175,118 Effective search space: 520099010046 Effective search space used: 520099010046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)